13  structures 477  species 560  sequences

Family: Telomerase-vert (RF00024)

Description: Vertebrate telomerase RNA

Summary

Clan

This family is a member of clan (CL00004), which contains the following 4 members:

Sacc_telomerase Telomerase-cil Telomerase-vert Telomerase_Asco

Wikipedia annotation Edit Wikipedia article

The Rfam group coordinates the annotation of Rfam families in Wikipedia. This family is described by a Wikipedia entry Telomerase RNA component. More...

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Sequences

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Table preview (300 out of 560 sequence regions)

Original order Download FASTA Accession Bit score Type Start End Description Species View context
0
AF221915.1 N/A seed 120 667 Rhizoprionodon porosus telomerase RNA gene, sequence. Rhizoprionodon porosus (Caribbean sharpnose shark) ENA graphic
1
AF221933.1 N/A seed 121 679 Mustelus canis telomerase RNA gene, sequence. Mustelus canis (smooth dogfish) ENA graphic
2
AF221919.1 N/A seed 107 614 Dasyurus hallucatus telomerase RNA gene, sequence. Dasyurus hallucatus (northern quoll) ENA graphic
3
AF221914.1 N/A seed 112 589 Dasyatis sabina telomerase RNA gene, sequence. Dasyatis sabina (Atlantic stingray) ENA graphic
4
AF221935.1 N/A seed 112 602 Rhinoptera bonasus telomerase RNA gene, sequence. Rhinoptera bonasus ENA graphic
5
AF221908.1 N/A seed 136 584 Xenopus laevis telomerase RNA gene, sequence. Xenopus laevis (African clawed frog) ENA graphic
6
AF221913.1 N/A seed 109 520 Bufo japonicus telomerase RNA gene, sequence. Bufo japonicus (Japanese toad) ENA graphic
7
AF221926.1 N/A seed 103 507 Ceratophrys ornata telomerase RNA gene, sequence. Ceratophrys ornata (ornate horned frog) ENA graphic
8
AF221940.1 N/A seed 103 499 Pyxicephalus adspersus telomerase RNA gene, sequence. Pyxicephalus adspersus ENA graphic
9
AF221934.1 N/A seed 121 565 Dermophis mexicanus telomerase RNA gene, sequence. Dermophis mexicanus ENA graphic
10
AF221927.1 N/A seed 113 556 Herpele squalostoma telomerase RNA gene, sequence. Herpele squalostoma ENA graphic
11
AF221910.1 N/A seed 112 554 Typhlonectes natans telomerase RNA gene, sequence. Typhlonectes natans (Rio Cauca caecilian) ENA graphic
12
AF221932.1 N/A seed 102 549 Elephas maximus telomerase RNA gene, sequence. Elephas maximus (Asiatic elephant) ENA graphic
13
AF221923.1 N/A seed 106 554 Trichechus manatus telomerase RNA gene, sequence. Trichechus manatus (Caribbean manatee) ENA graphic
14
AF221918.1 N/A seed 97 547 Oryctolagus cuniculus telomerase RNA gene, sequence. Oryctolagus cuniculus (rabbit) ENA graphic
15
AF221929.1 N/A seed 92 517 Cavia porcellus telomerase RNA gene, sequence. Cavia porcellus (Domestic guinea pig) ENA graphic
16
AF221937.1 N/A seed 99 545 Chinchilla brevicaudata telomerase RNA gene, sequence. Chinchilla brevicaudata (chinchilla) ENA graphic
17
AF221930.1 N/A seed 94 546 Geomys breviceps telomerase RNA gene, sequence. Geomys breviceps ENA graphic
18
AF221909.1 N/A seed 98 496 Microtus ochrogaster telomerase RNA gene, sequence. Microtus ochrogaster (prairie vole) ENA graphic
19
AF221928.1 N/A seed 95 476 Cricetulus griseus telomerase RNA gene, sequence. Cricetulus griseus (Chinese hamster) ENA graphic
20
AC121792.3 N/A seed 109,554 109,950 Mus musculus BAC clone RP23-404J7 from 3, complete sequence. Mus musculus (house mouse) ENA graphic
21
AF221916.1 N/A seed 94 481 Rattus norvegicus telomerase RNA gene, sequence. Rattus norvegicus (Norway rat) ENA graphic
22
AY058901.1 N/A seed 1 397 Mus spretus telomerase RNA, genomic sequence. Mus spretus (western wild mouse) ENA graphic
23
U85256.1 N/A seed 1 451 Human telomerase RNA, partial sequence. Homo sapiens (human) ENA graphic
24
AF221912.1 N/A seed 98 564 Tupaia glis belangeri telomerase RNA gene, sequence. Tupaia belangeri (northern tree shrew) ENA graphic
25
AF221939.1 N/A seed 99 544 Felis catus telomerase RNA gene, sequence. Felis catus (domestic cat) ENA graphic
26
AF221931.1 N/A seed 99 541 Mustela putorius furo telomerase RNA gene, sequence. Mustela putorius furo (domestic ferret) ENA graphic
27
AF221917.1 N/A seed 99 542 Procyon lotor telomerase RNA gene, sequence. Procyon lotor (raccoon) ENA graphic
28
AF221936.1 N/A seed 98 540 Bos taurus telomerase RNA gene, sequence. Bos taurus (cattle) ENA graphic
29
AF221920.1 N/A seed 99 541 Sus scrofa telomerase RNA gene, sequence. Sus scrofa (pig) ENA graphic
30
AF221921.1 N/A seed 98 548 Suncus murinus telomerase RNA gene, sequence. Suncus murinus (house shrew) ENA graphic
31
AF221925.1 N/A seed 98 540 Equus caballus telomerase RNA gene, sequence. Equus caballus (horse) ENA graphic
32
AF221906.1 N/A seed 96 545 Dasypus novemcinctus telomerase RNA gene, sequence. Dasypus novemcinctus (nine-banded armadillo) ENA graphic
33
AF221911.1 N/A seed 104 513 Chelydra serpentina telomerase RNA gene, sequence. Chelydra serpentina (snapping turtle) ENA graphic
34
AF221924.1 N/A seed 105 538 Anodorhynchus hyacinthinus telomerase RNA gene, sequence. Anodorhynchus hyacinthinus ENA graphic
35
AY312571.1 N/A seed 605 1,069 Gallus gallus gallus telomerase RNA gene, complete sequence. Gallus gallus gallus ENA graphic
36
AF147806.2 N/A seed 247 692 Gallid herpesvirus 2, complete genome. Gallid herpesvirus 2 (Marek's disease virus type 1) ENA graphic
0
FNWR01000088.1 367.00 full 4,044,105 4,044,534 FNWR01000088.1 Neovison vison genome assembly, contig: scaffold88, whole genome shotgun sequence Neovison vison ENA graphic
1
NW_019154086.1 366.20 full 20,749,348 20,749,777 NW_019154086.1 Enhydra lutris kenyoni isolate GAN:26980312 unplaced genomic scaffold, ASM228890v2 scaffoldscaffold2, whole genome shotgun sequence Enhydra lutris kenyoni ENA graphic
2
KQ018509.1 365.90 full 3,370,281 3,369,845 KQ018509.1 Propithecus coquereli isolate 6110/MARCELLA unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Propithecus coquereli (Coquerel's sifaka) ENA graphic
3
CYRY02012220.1 364.20 full 560,899 560,470 CYRY02012220.1 Gulo gulo genome assembly, contig: scaffold210, whole genome shotgun sequence Gulo gulo (wolverine) ENA graphic
4
NW_025421987.1 363.60 full 72,329,400 72,328,971 NW_025421987.1 Mustela putorius furo isolate JIRA1106 unplaced genomic scaffold, ASM1176430v1.1 tig00003834_pilon_pilon_pilon, whole genome shotgun sequence Mustela putorius furo (domestic ferret) ENA graphic
5
CM021931.1 361.70 full 10,296,422 10,296,859 CM021931.1 Callithrix jacchus isolate mCalJac1 chromosome 17, whole genome shotgun sequence Callithrix jacchus (white-tufted-ear marmoset) ENA graphic
6
KN294147.1 359.90 full 1,900,000 1,900,438 KN294147.1 Rhinopithecus roxellana isolate Xiao Hai unplaced genomic scaffold ENSRROG000049, whole genome shotgun sequence Rhinopithecus roxellana (golden snub-nosed monkey) ENA graphic
7
FR853096.2 359.50 full 172,553,372 172,552,935 Gorilla gorilla gorilla genomic chromosome, chr3, whole genome shotgun sequence Gorilla gorilla gorilla (western lowland gorilla) ENA graphic
8
NW_020312785.1 359.20 full 85,842,486 85,842,915 NW_020312785.1 Callorhinus ursinus isolate GAN/ISIS: 27379988/994484 unplaced genomic scaffold, ASM326570v1 scaffold29, whole genome shotgun sequence Callorhinus ursinus (northern fur seal) ENA graphic
9
CM018469.1 359.20 full 61,684,299 61,683,868 CM018469.1 Panthera leo isolate Brooke chromosome D1, whole genome shotgun sequence Panthera leo (lion) ENA graphic
10
KV389713.1 359.10 full 1,138,671 1,139,108 KV389713.1 Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold287, whole genome shotgun sequence Cebus imitator (Panamanian white-faced capuchin) ENA graphic
11
NW_022436944.1 359.10 full 1,123,478 1,123,915 NW_022436944.1 Sapajus apella isolate SASKATOON/1434 unplaced genomic scaffold, GSC_monkey_1.0 scaffold4, whole genome shotgun sequence Cebus apella (Tufted capuchin) ENA graphic
12
CAAGRJ010010522.1 358.90 full 3,108,567 3,108,999 CAAGRJ010010522.1 Lynx pardinus genome assembly, contig: lp23s00008, whole genome shotgun sequence Lynx pardinus (Spanish lynx) ENA graphic
13
CM017337.2 358.90 full 62,838,654 62,838,222 CM017337.2 Lynx canadensis isolate LIC74 chromosome C2, whole genome shotgun sequence Lynx canadensis (Canada lynx) ENA graphic
14
NW_020834740.1 358.90 full 35,982,176 35,982,608 NW_020834740.1 Acinonyx jubatus isolate Rico unplaced genomic scaffold, Aci_jub_2 Primary Assembly Aci_jub_2_ph1_scaffold14, whole genome shotgun sequence Acinonyx jubatus (cheetah) ENA graphic
15
JH378117.1 358.40 full 8,978,923 8,979,360 JH378117.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00013, whole genome shotgun sequence Saimiri boliviensis boliviensis (Bolivian squirrel monkey) ENA graphic
16
MCGX01010816.1 357.70 full 44,741 44,303 MCGX01010816.1 Rhinopithecus bieti isolate Rb0 scaffold_32014, whole genome shotgun sequence Rhinopithecus bieti (Black snub-nosed monkey) ENA graphic
17
CM001386.3 357.60 full 98,452,558 98,452,990 Felis catus isolate Cinnamon breed Abyssinian chromosome C2, whole genome shotgun sequence. Felis catus (domestic cat) ENA graphic
18
CM000317.3 357.50 full 173,452,317 173,451,880 Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 3, whole genome shotgun sequence. Pan troglodytes (chimpanzee) ENA graphic
19
CM003386.1 357.50 full 174,832,247 174,831,810 CM003386.1 Pan paniscus isolate Ulindi chromosome 3, whole genome shotgun sequence Pan paniscus (pygmy chimpanzee) ENA graphic
20
CM001657.1 357.40 full 94,220,640 94,220,203 Nomascus leucogenys chromosome 11, whole genome shotgun sequence. Nomascus leucogenys (Northern white-cheeked gibbon) ENA graphic
21
CM022819.1 357.00 full 92,346,148 92,346,577 CM022819.1 Ailuropoda melanoleuca isolate Jingjing chromosome 1, whole genome shotgun sequence Ailuropoda melanoleuca (giant panda) ENA graphic
22
NW_004450278.1 356.40 full 4,408,599 4,408,170 NW_004450278.1 Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold, Oros_1.0 Scaffold15, whole genome shotgun sequence Odobenus rosmarus divergens (Pacific walrus) ENA graphic
23
CM019241.1 356.00 full 117,438,560 117,438,998 CM019241.1 Piliocolobus tephrosceles isolate RC106 chromosome 2, whole genome shotgun sequence Piliocolobus tephrosceles (Ugandan red Colobus) ENA graphic
24
CM009265.2 355.80 full 167,351,635 167,351,198 CM009265.2 Pongo abelii isolate Susie chromosome 3, whole genome shotgun sequence Pongo abelii (Sumatran orangutan) ENA graphic
25
KZ197721.1 355.60 full 427,650 428,087 KZ197721.1 Aotus nancymaae isolate 86115 unplaced genomic scaffold Scaffold131.17, whole genome shotgun sequence Aotus nancymaae (Ma's night monkey) ENA graphic
26
LZNR01009877.1 355.40 full 98,276 98,705 LZNR01009877.1 Ursus americanus isolate MABB319796 Contig9883, whole genome shotgun sequence Ursus americanus (American black bear) ENA graphic
27
CM016975.1 355.30 full 94,926,360 94,926,791 CM016975.1 Suricata suricatta isolate VVHF042 chromosome 5, whole genome shotgun sequence Suricata suricatta (meerkat) ENA graphic
28
NW_024426552.1 355.10 full 91,861,822 91,862,251 NW_024426552.1 Ursus maritimus isolate PB19 unplaced genomic scaffold, ASM1731132v1 scaffold_4, whole genome shotgun sequence Ursus maritimus (polar bear) ENA graphic
29
CM001956.2 354.70 full 19,631,350 19,631,788 Chlorocebus sabaeus isolate 1994-021 chromosome 15, whole genome shotgun sequence. Chlorocebus sabaeus ENA graphic
30
MPIZ01000532.1 354.70 full 2,840,867 2,841,301 MPIZ01000532.1 Prolemur simus strain KIAN8.4 scaffold532, whole genome shotgun sequence Prolemur simus (greater bamboo lemur) ENA graphic
31
KN981479.1 354.50 full 1,850,835 1,851,273 KN981479.1 Colobus angolensis palliatus isolate OR3802 unplaced genomic scaffold Scaffold289, whole genome shotgun sequence Colobus angolensis palliatus ENA graphic
32
NC_058403.1 354.10 full 93,417,257 93,417,686 NC_058403.1 Neomonachus schauinslandi chromosome 1, ASM220157v2, whole genome shotgun sequence Monachus schauinslandi (Hawaiian monk seal) ENA graphic
33
NW_006384804.1 354.10 full 436,184 435,755 NW_006384804.1 Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold, LepWed1.0 scaffold01764, whole genome shotgun sequence Leptonychotes weddellii (Weddell seal) ENA graphic
34
CM000665.2 353.60 full 169,765,047 169,764,610 Homo sapiens chromosome 3, GRCh38 reference primary assembly. Homo sapiens (human) ENA graphic
35
CM009951.1 353.40 full 121,128,359 121,128,797 CM009951.1 Theropithecus gelada isolate Dixy chromosome 2, whole genome shotgun sequence Theropithecus gelada (gelada baboon) ENA graphic
36
CM014337.1 353.40 full 74,697,287 74,696,849 CM014337.1 Macaca mulatta isolate AG07107 chromosome 2, whole genome shotgun sequence Macaca mulatta (Rhesus monkey) ENA graphic
37
CM018181.1 353.40 full 121,267,401 121,267,839 CM018181.1 Papio anubis isolate 15944 chromosome 2, whole genome shotgun sequence Papio anubis (Olive baboon) ENA graphic
38
KQ004675.1 353.40 full 3,765,150 3,765,588 KQ004675.1 Macaca nemestrina isolate M95218 unplaced genomic scaffold Scaffold106, whole genome shotgun sequence Macaca nemestrina (pig-tailed macaque) ENA graphic
39
KQ012896.1 353.40 full 6,817,469 6,817,031 KQ012896.1 Cercocebus atys isolate FAK unplaced genomic scaffold Scaffold91, whole genome shotgun sequence Cercocebus atys (sooty mangabey) ENA graphic
40
CABDUW010003927.1 351.80 full 49,812 50,248 CABDUW010003927.1 Marmota monax genome assembly, contig: monax5_s03927, whole genome shotgun sequence Marmota monax (woodchuck) ENA graphic
41
CM000803.1 351.20 full 64,663,658 64,663,221 Oryctolagus cuniculus chromosome 14, whole genome shotgun sequence. Oryctolagus cuniculus (rabbit) ENA graphic
42
CM021940.1 351.10 full 73,068,828 73,068,391 CM021940.1 Macaca fascicularis isolate cy0333 breed Mauritian cynomolgus macaque chromosome 2, whole genome shotgun sequence Macaca fascicularis (crab-eating macaque) ENA graphic
43
PVHT021183693.1 350.80 full 26,124,222 26,123,793 PVHT021183693.1 Catagonus wagneri isolate BS18 Sc2sB16_1185047;HRSCAF=1231754_2, whole genome shotgun sequence Catagonus wagneri (Chacoan peccary) ENA graphic
44
CM007661.1 350.00 full 63,530,108 63,529,676 CM007661.1 Microcebus murinus isolate mixed chromosome 1, whole genome shotgun sequence Microcebus murinus (gray mouse lemur) ENA graphic
45
LR738620.1 347.70 full 103,111,500 103,111,935 LR738620.1 Sciurus vulgaris genome assembly, chromosome: 10 Sciurus vulgaris (Eurasian red squirrel) ENA graphic
46
JACASF010000005.1 345.20 full 36,542,521 36,542,091 JACASF010000005.1 Molossus molossus isolate mMolMol1 scaffold_m16_p_5, whole genome shotgun sequence Molossus molossus (Pallas's mastiff bat) ENA graphic
47
NW_004444046.1 343.80 full 4,389,698 4,389,263 NW_004444046.1 Trichechus manatus latirostris isolate Lorelei unplaced genomic scaffold, TriManLat1.0 scaffold00110, whole genome shotgun sequence Trichechus manatus latirostris ENA graphic
48
KB030623.1 343.60 full 2,719,854 2,719,426 KB030623.1 Pteropus alecto unplaced genomic scaffold scaffold33, whole genome shotgun sequence Pteropus alecto (black flying fox) ENA graphic
49
JACASE010000004.1 343.00 full 30,196,362 30,195,933 JACASE010000004.1 Rousettus aegyptiacus isolate mRouAeg1 scaffold_m13_p_4, whole genome shotgun sequence Rousettus aegyptiacus (Egyptian rousette) ENA graphic
50
JH393403.1 342.40 full 2,655,555 2,655,991 JH393403.1 Spermophilus tridecemlineatus unplaced genomic scaffold scaffold00125, whole genome shotgun sequence Spermophilus tridecemlineatus (thirteen-lined ground squirrel) ENA graphic
51
QVIC01000148.1 342.30 full 2,757,605 2,758,041 QVIC01000148.1 Urocitellus parryii isolate AGS 11-09-20 scaffold_147, whole genome shotgun sequence Spermophilus parryii (Arctic ground squirrel) ENA graphic
52
JAATJV010143100.1 342.10 full 869,242 869,677 JAATJV010143100.1 Sciurus carolinensis isolate SUZIE scaffold1099, whole genome shotgun sequence Sciurus carolinensis (gray squirrel) ENA graphic
53
CM008026.1 342.00 full 7,802,225 7,801,796 CM008026.1 Cervus elaphus hippelaphus isolate Hungarian chromosome 19, whole genome shotgun sequence Cervus elaphus hippelaphus ENA graphic
54
NW_011888793.1 341.80 full 12,251,259 12,250,831 NW_011888793.1 Pteropus vampyrus isolate Shadow unplaced genomic scaffold, Pvam_2.0 Scaffold12, whole genome shotgun sequence Pteropus vampyrus (large flying fox) ENA graphic
55
CM021210.1 340.00 full 72,299,642 72,300,070 CM021210.1 Cervus hanglu yarkandensis isolate CEY-2017 chromosome 19, whole genome shotgun sequence Cervus elaphus yarkandensis ENA graphic
56
JACDTQ010001514.1 339.90 full 7,908,108 7,907,680 JACDTQ010001514.1 Diceros bicornis minor isolate SBR-YM ScS9zPn_1514, whole genome shotgun sequence Diceros bicornis minor ENA graphic
57
CM016627.2 339.20 full 40,496,048 40,495,622 CM016627.2 Camelus dromedarius isolate Drom800 breed African chromosome 1, whole genome shotgun sequence Camelus dromedarius (Arabian camel) ENA graphic
58
CM000824.5 339.10 full 108,426,495 108,426,066 Sus scrofa isolate TJ Tabasco breed Duroc chromosome 13, whole genome shotgun sequence. Sus scrofa (pig) ENA graphic
59
CM018485.1 339.10 full 71,392,774 71,393,203 CM018485.1 Muntiacus reevesi isolate UCam_UCB_Mr chromosome 7, whole genome shotgun sequence Muntiacus reevesi (Chinese muntjac) ENA graphic
60
NW_018342109.1 338.70 full 396,161 396,590 NW_018342109.1 Odocoileus virginianus texanus isolate animal Pink-7 unplaced genomic scaffold, Ovir.te_1.0 scaffold834, whole genome shotgun sequence Odocoileus virginianus texanus ENA graphic
61
KE721690.1 338.20 full 3,937,432 3,937,001 KE721690.1 Panthera tigris altaica isolate TaeGuk unplaced genomic scaffold scaffold147, whole genome shotgun sequence Panthera tigris altaica (Amur tiger) ENA graphic
62
NC_041214.2 337.90 full 63,202,777 63,202,350 NC_041214.2 Physeter catodon isolate SW-GA chromosome 1, ASM283717v5, whole genome shotgun sequence Physeter catodon (sperm whale) ENA graphic
63
CM009166.1 336.30 full 12,585,200 12,584,771 CM009166.1 Equus caballus isolate Twilight breed thoroughbred chromosome 19, whole genome shotgun sequence Equus caballus (horse) ENA graphic
64
CM016690.1 336.10 full 106,138,053 106,138,482 CM016690.1 Bos grunniens isolate yakHY00 ecotype maiwa chromosome 1, whole genome shotgun sequence Bos grunniens (domestic yak) ENA graphic
65
JH883129.1 336.10 full 276,272 276,701 JH883129.1 Bos grunniens mutus unplaced genomic scaffold scaffold2474_1, whole genome shotgun sequence Bos grunniens mutus ENA graphic
66
NW_011494612.1 336.10 full 3,775,340 3,774,911 NW_011494612.1 Bison bison bison isolate TAMUID 2011002044 unplaced genomic scaffold, Bison_UMD1.0 scf7180017864040, whole genome shotgun sequence Bison bison bison (north american plains bison) ENA graphic
67
NC_045788.1 335.80 full 47,938,571 47,938,144 NC_045788.1 Balaenoptera musculus isolate JJ_BM4_2016_0621 chromosome 4, mBalMus1.pri.v3, whole genome shotgun sequence Balaenoptera musculus (Blue whale) ENA graphic
68
CM008168.2 335.70 full 97,612,804 97,613,233 CM008168.2 Bos taurus isolate L1 Dominette 01449 registration number 42190680 breed Hereford chromosome 1, whole genome shotgun sequence Bos taurus (cattle) ENA graphic
69
CM011774.1 335.70 full 59,765,785 59,765,356 CM011774.1 Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid chromosome 1, whole genome shotgun sequence Bos indicus x Bos taurus (hybrid cattle) ENA graphic
70
CM011791.1 335.70 full 31,738,700 31,738,271 CM011791.1 Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid chromosome 18, whole genome shotgun sequence Bos indicus x Bos taurus (hybrid cattle) ENA graphic
71
NC_032650.1 335.70 full 100,018,848 100,019,277 NC_032650.1 Bos indicus isolate QUIL7308 breed Nelore chromosome 1, Bos_indicus_1.0, whole genome shotgun sequence Bos indicus ENA graphic
72
CM027694.2 335.60 full 62,304,875 62,304,446 CM027694.2 Equus asinus breed Dezhou chromosome 5, whole genome shotgun sequence Equus asinus (ass) ENA graphic
73
CM004562.1 335.20 full 97,138,833 97,139,262 CM004562.1 Capra hircus breed San Clemente chromosome 1, whole genome shotgun sequence Capra hircus (goat) ENA graphic
74
NW_006770909.1 334.90 full 5,352,331 5,351,905 NW_006770909.1 Lipotes vexillifer unplaced genomic scaffold, Lipotes_vexillifer_v1 scaffold763, whole genome shotgun sequence Lipotes vexillifer (Yangtze River dolphin) ENA graphic
75
NW_022098104.1 333.80 full 108,158,611 108,159,037 NW_022098104.1 Delphinapterus leucas isolate GAN/ISIS: 26980492/103006 unplaced genomic scaffold, ASM228892v3 scaffoldscaffold113, whole genome shotgun sequence Delphinapterus leucas (beluga whale) ENA graphic
76
RWIC01000721.1 333.80 full 816,372 815,946 RWIC01000721.1 Monodon monoceros isolate MVW Scaffold720, whole genome shotgun sequence Monodon monoceros (narwhal) ENA graphic
77
NW_020185321.1 333.70 full 7,971,970 7,971,543 NW_020185321.1 Neophocaena asiaeorientalis asiaeorientalis breed wild unplaced genomic scaffold, Neophocaena_asiaeorientalis_V1 scaffold280, whole genome shotgun sequence Neophocaena asiaeorientalis asiaeorientalis (yangtze finless porpoise) ENA graphic
78
NW_021964154.1 333.20 full 40,791,317 40,790,891 NW_021964154.1 Vicugna pacos isolate Carlotta (AHFN-0088) chromosome 1 unlocalized genomic scaffold, VicPac3.1 ScfyRBE_77225;HRSCAF=78975, whole genome shotgun sequence Vicugna pacos (alpaca) ENA graphic
79
CM001582.2 332.60 full 215,489,218 215,489,647 Ovis aries breed Texel chromosome 1, whole genome shotgun sequence. Ovis aries (sheep) ENA graphic
80
NC_047037.1 331.90 full 47,526,986 47,526,560 NC_047037.1 Tursiops truncatus isolate mTurTru1 chromosome 4, mTurTru1.mat.Y, whole genome shotgun sequence Tursiops truncatus (bottlenosed dolphin) ENA graphic
81
QWLN02020823.1 331.90 full 1,500,775 1,500,349 QWLN02020823.1 Sousa chinensis isolate MY-2018 scaffold121.1, whole genome shotgun sequence Sousa chinensis (Indo-pacific humpbacked dolphin) ENA graphic
82
CM018159.1 331.50 full 47,812,591 47,812,164 CM018159.1 Phocoena sinus isolate mPhoSin1 chromosome 4, whole genome shotgun sequence Phocoena sinus (vaquita) ENA graphic
83
GL010069.1 331.40 full 10,605,997 10,606,432 Loxodonta africana unplaced genomic scaffold scaffold_42, whole genome shotgun sequence. Loxodonta africana (African savanna elephant) ENA graphic
84
NW_006921755.1 328.00 full 3,591,775 3,592,208 NW_006921755.1 Orycteropus afer afer isolate SDZICR_OR568_19922 unplaced genomic scaffold, OryAfe1.0 scaffold00168, whole genome shotgun sequence Orycteropus afer afer ENA graphic
85
NC_032667.1 327.50 full 32,935,402 32,935,831 NC_032667.1 Bos indicus isolate QUIL7308 breed Nelore chromosome 18, Bos_indicus_1.0, whole genome shotgun sequence Bos indicus ENA graphic
86
JAGFMF010011830.1 326.90 full 6,603,500 6,603,926 JAGFMF010011830.1 Galemys pyrenaicus isolate IBE-C5619 2611510, whole genome shotgun sequence Galemys pyrenaicus ENA graphic
87
CM014227.1 326.60 full 72,399,080 72,399,512 CM014227.1 Rhinolophus ferrumequinum isolate MPI-CBG mRhiFer1 chromosome 2, whole genome shotgun sequence Rhinolophus ferrumequinum (greater horseshoe bat) ENA graphic
88
NW_017731433.1 325.40 full 2,838,944 2,838,516 NW_017731433.1 Hipposideros armiger isolate ML-2016 unplaced genomic scaffold, ASM189008v1, whole genome shotgun sequence Hipposideros armiger ENA graphic
89
SGJD01000914.1 325.20 full 2,558,540 2,558,092 SGJD01000914.1 Balaenoptera physalus isolate FinWhale-01 scaffold1098, whole genome shotgun sequence Balaenoptera physalus (Fin whale) ENA graphic
90
NC_040904.2 323.40 full 32,816,036 32,815,603 NC_040904.2 Phyllostomus discolor isolate MPI-MPIP mPhyDis1 chromosome 2, mPhyDis1.pri.v3, whole genome shotgun sequence Phyllostomus discolor (pale spear-nosed bat) ENA graphic
91
KB320711.1 318.40 full 193,714 194,170 KB320711.1 Tupaia chinensis unplaced genomic scaffold Scaffold000281_1, whole genome shotgun sequence Tupaia chinensis (Chinese tree shrew) ENA graphic
92
JAULJE010000004.1 312.40 full 79,240,919 79,241,357 JAULJE010000004.1 Eptesicus nilssonii isolate BLF_Eptnil Scaffold_4, whole genome shotgun sequence Eptesicus nilssoni (northern bat) ENA graphic
93
GL429820.1 309.80 full 2,656,593 2,657,017 Myotis lucifugus unplaced genomic scaffold scaffold_53, whole genome shotgun sequence. Myotis lucifugus (little brown bat) ENA graphic
94
NW_006408561.1 306.70 full 17,332,618 17,332,184 NW_006408561.1 Chrysochloris asiatica unplaced genomic scaffold, ChrAsi1.0 scaffold00043, whole genome shotgun sequence Chrysochloris asiatica ENA graphic
95
DS562955.1 303.60 full 2,291,304 2,290,878 Cavia porcellus supercont2_100 genomic scaffold, whole genome shotgun sequence. Cavia porcellus (Domestic guinea pig) ENA graphic
96
JABWUV010000002.1 302.70 full 186,553,236 186,553,660 JABWUV010000002.1 Myotis myotis isolate mMyoMyo1 scaffold_m19_p_2, whole genome shotgun sequence Myotis myotis ENA graphic
97
NW_017872830.1 302.30 full 11,433 11,006 NW_017872830.1 Castor canadensis isolate Ward unplaced genomic scaffold, C.can genome v1.0 scaffold_3503, whole genome shotgun sequence Castor canadensis (American beaver) ENA graphic
98
CAJHUB010000771.1 299.80 full 65,474,717 65,474,282 CAJHUB010000771.1 Nyctereutes procyonoides isolate TBG_1078 genome assembly, contig: Nypro793, whole genome shotgun sequence Nyctereutes procyonoides (raccoon dog) ENA graphic
99
JH721880.1 299.60 full 18,265 17,832 JH721880.1 Chinchilla lanigera unplaced genomic scaffold scaffold00019, whole genome shotgun sequence Chinchilla lanigera ENA graphic
100
GL873603.1 299.30 full 7,335,131 7,334,703 Otolemur garnettii unplaced genomic scaffold scaffold00084, whole genome shotgun sequence. Otolemur garnettii (small-eared galago) ENA graphic
101
JACAGB010000002.1 298.90 full 25,796,663 25,796,209 JACAGB010000002.1 Pipistrellus kuhlii isolate mPipKuh1 scaffold_m20_p_2, whole genome shotgun sequence Pipistrellus kuhlii (Kuhl's pipistrelle) ENA graphic
102
CM025133.1 297.50 full 34,447,504 34,447,069 CM025133.1 Canis lupus familiaris isolate SID07034 breed Labrador retriever chromosome 34, whole genome shotgun sequence Canis lupus familiaris (dog) ENA graphic
103
CM025490.1 297.50 full 34,461,715 34,461,280 CM025490.1 Canis lupus dingo isolate Sandy chromosome 34, whole genome shotgun sequence Canis lupus dingo (dingo) ENA graphic
104
JWIN03000053.1 296.80 full 194,285 194,706 JWIN03000053.1 Camelus dromedarius breed African isolate Drom800 Contig47, whole genome shotgun sequence Camelus dromedarius (Arabian camel) ENA graphic
105
NW_011512859.1 294.80 full 18,031,897 18,031,476 NW_011512859.1 Camelus bactrianus breed Alxa unplaced genomic scaffold, Ca_bactrianus_MBC_1.0 scaffold73, whole genome shotgun sequence Camelus bactrianus (Bactrian camel) ENA graphic
106
NW_012267246.1 287.50 full 9,967,032 9,966,597 NW_012267246.1 Dipodomys ordii isolate 6190 unplaced genomic scaffold, Dord_2.0 Scaffold30, whole genome shotgun sequence Dipodomys ordii (Ord's kangaroo rat) ENA graphic
107
NW_004524631.1 285.20 full 6,777,201 6,777,639 NW_004524631.1 Octodon degus isolate 3935 unplaced genomic scaffold, OctDeg1.0 scaffold00055, whole genome shotgun sequence Octodon degus (degu) ENA graphic
108
NW_020356501.1 275.10 full 4,657,201 4,656,767 NW_020356501.1 Vulpes vulpes strain TameXAggressive cross unplaced genomic scaffold, VulVul2.2 scaffold67, whole genome shotgun sequence Vulpes vulpes (red fox) ENA graphic
109
KL200152.1 274.10 full 2,088,516 2,088,940 KL200152.1 Nannospalax galili isolate Female #2095 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Nannospalax galili (Upper Galilee mountains blind mole rat) ENA graphic
110
NTJE010195129.1 268.00 full 5,102 4,737 NTJE010195129.1 Eschrichtius robustus isolate AM-GW-M-EMB-4M-20130531 contig_216009, whole genome shotgun sequence Eschrichtius robustus (grey whale) ENA graphic
111
PVHU020000827.1 265.30 full 22,585,391 22,585,783 PVHU020000827.1 Moschus moschiferus isolate BS20 Scw3uUT_765;HRSCAF=73309_4, whole genome shotgun sequence Moschus moschiferus (Siberian musk deer) ENA graphic
112
NW_006804113.1 259.30 full 1,228,609 1,229,031 NW_006804113.1 Erinaceus europaeus isolate Erinaceus europaeus_13Jul2011 unplaced genomic scaffold, EriEur2.0 scaffold00190, whole genome shotgun sequence Erinaceus europaeus (western European hedgehog) ENA graphic
113
CM026975.1 255.50 full 112,815,622 112,816,041 CM026975.1 Rattus norvegicus strain BN/NHsdMcwi chromosome 2, whole genome shotgun sequence Rattus norvegicus (Norway rat) ENA graphic
114
NC_047092.1 252.10 full 162,975,972 162,976,426 NC_047092.1 Geotrypetes seraphini chromosome 9, aGeoSer1.1, whole genome shotgun sequence Geotrypetes seraphini ENA graphic
115
NW_004801623.1 243.60 full 17,974,559 17,974,162 NW_004801623.1 Mesocricetus auratus isolate Golden Hamster female 1 unplaced genomic scaffold, MesAur1.0 scaffold00020, whole genome shotgun sequence Mesocricetus auratus (golden hamster) ENA graphic
116
JH000397.1 243.40 full 731,342 731,734 JH000397.1 Cricetulus griseus cell line CHO-K1 unplaced genomic scaffold scaffold2001, whole genome shotgun sequence Cricetulus griseus (Chinese hamster) ENA graphic
117
QGOO02000018.1 243.30 full 4,963,413 4,962,991 QGOO02000018.1 Mus spicilegus strain ZRU musp714_scaffold_00018b, whole genome shotgun sequence Mus spicilegus (steppe mouse) ENA graphic
118
VOAJ01003100.1 242.10 full 639,177 638,795 VOAJ01003100.1 Crocuta crocuta isolate KB4526 scaffold433, whole genome shotgun sequence Crocuta crocuta (spotted hyena) ENA graphic
119
JAATJU010017933.1 238.30 full 63,997 64,411 JAATJU010017933.1 Microtus ochrogaster isolate LTLLF scaffold174, whole genome shotgun sequence Microtus ochrogaster (prairie vole) ENA graphic
120
CM000996.3 237.40 full 96,322,176 96,321,753 CM000996.3 Mus musculus chromosome 3, GRCm39 reference primary assembly C57BL/6J Mus musculus (house mouse) ENA graphic
121
NC_044039.1 237.20 full 82,319,951 82,320,383 NC_044039.1 Microcaecilia unicolor chromosome 9, aMicUni1.1, whole genome shotgun sequence Microcaecilia unicolor ENA graphic
122
JH725443.1 236.10 full 33,476,817 33,477,253 JH725443.1 Jaculus jaculus unplaced genomic scaffold scaffold00007, whole genome shotgun sequence Jaculus jaculus (lesser Egyptian jerboa) ENA graphic
123
ML685768.1 221.20 full 26,983,443 26,983,039 ML685768.1 Pelusios castaneus unplaced genomic scaffold Scaffold33, whole genome shotgun sequence Pelusios castaneus ENA graphic
124
KV958908.1 217.90 full 18,703 18,302 KV958908.1 Rana catesbeiana isolate Bruno unplaced genomic scaffold Rc-01r160223s0033129, whole genome shotgun sequence Rana catesbeiana (bullfrog) ENA graphic
125
NW_006803952.1 209.70 full 4,775,810 4,776,208 NW_006803952.1 Erinaceus europaeus isolate Erinaceus europaeus_13Jul2011 unplaced genomic scaffold, EriEur2.0 scaffold00029, whole genome shotgun sequence Erinaceus europaeus (western European hedgehog) ENA graphic
126
NW_017731727.1 207.10 full 1,497,680 1,497,269 NW_017731727.1 Hipposideros armiger isolate ML-2016 unplaced genomic scaffold, ASM189008v1, whole genome shotgun sequence Hipposideros armiger ENA graphic
127
ML689098.1 205.90 full 35,018,487 35,018,082 ML689098.1 Chelydra serpentina unplaced genomic scaffold Scaffold118, whole genome shotgun sequence Chelydra serpentina (snapping turtle) ENA graphic
128
QXTE01000035.1 205.50 full 8,919,430 8,919,026 QXTE01000035.1 Platysternon megacephalum isolate DO16091913 scaf35, whole genome shotgun sequence Platysternon megacephalum (big-headed turtle) ENA graphic
129
PRFB02000089.1 202.40 full 34,985,939 34,985,535 PRFB02000089.1 Terrapene triunguis isolate 2854851 Scaffold88, whole genome shotgun sequence Terrapene carolina triunguis (three-toed box turtle) ENA graphic
130
CM035641.1 201.80 full 88,833,218 88,832,813 CM035641.1 Mauremys mutica isolate MM-2020 ecotype Southern chromosome 9, whole genome shotgun sequence Mauremys mutica ENA graphic
131
CM024786.1 201.50 full 83,749,889 83,749,484 CM024786.1 Chrysemys picta bellii isolate RCT428 chromosome 9, whole genome shotgun sequence Chrysemys picta bellii (western painted turtle) ENA graphic
132
KB030280.1 197.60 full 1,283,844 1,284,243 KB030280.1 Pteropus alecto unplaced genomic scaffold scaffold280, whole genome shotgun sequence Pteropus alecto (black flying fox) ENA graphic
133
NW_011889171.1 195.30 full 1,502,129 1,501,730 NW_011889171.1 Pteropus vampyrus isolate Shadow unplaced genomic scaffold, Pvam_2.0 Scaffold390, whole genome shotgun sequence Pteropus vampyrus (large flying fox) ENA graphic
134
PKMU01001678.1 193.50 full 2,217,795 2,218,198 PKMU01001678.1 Chelonoidis abingdonii isolate Lonesome George Contig194, whole genome shotgun sequence Geochelone nigra abingdoni ENA graphic
135
VYZH01000049.1 191.70 full 404,511 404,067 VYZH01000049.1 Probosciger aterrimus voucher USNM:615002 isolate B10K-DU-017-47 scaffold_44, whole genome shotgun sequence Probosciger aterrimus ENA graphic
136
CM017304.1 190.70 full 17,375,951 17,376,356 CM017304.1 Gopherus evgoodei ecotype Sinaloan lineage chromosome 9, whole genome shotgun sequence Gopherus evgoodei (goodes thornscrub tortoise) ENA graphic
137
WBNI01000791.1 188.70 full 160,785 160,336 WBNI01000791.1 Eolophus roseicapilla voucher USNM:632230 isolate B10K-DU-025-06 scaffold_744, whole genome shotgun sequence Eolophus roseicapillus (Galah) ENA graphic
138
NC_054388.1 187.80 full 69,664,158 69,664,590 NC_054388.1 Xenopus laevis strain J_2021 chromosome 9_10S, Xenopus_laevis_v10.1, whole genome shotgun sequence Xenopus laevis (African clawed frog) ENA graphic
139
PPEB01001631.1 187.10 full 90,815 90,411 PPEB01001631.1 Gopherus agassizii scaffold_1630, whole genome shotgun sequence Gopherus agassizii (desert tortoise) ENA graphic
140
VWZX01007345.1 184.60 full 3,546,638 3,546,175 VWZX01007345.1 Galbula dea voucher USNM:625763 isolate B10K-DU-001-62 scaffold472, whole genome shotgun sequence Galbula dea ENA graphic
141
NC_054387.1 183.10 full 79,363,991 79,364,429 NC_054387.1 Xenopus laevis strain J_2021 chromosome 9_10L, Xenopus_laevis_v10.1, whole genome shotgun sequence Xenopus laevis (African clawed frog) ENA graphic
142
CM033473.1 182.60 full 208,935,693 208,936,105 CM033473.1 Hymenochirus boettgeri isolate Female2 chromosome 5, whole genome shotgun sequence Hymenochirus boettgeri ENA graphic
143
VXAQ01000200.1 179.80 full 71,113 71,582 VXAQ01000200.1 Chordeiles acutipennis voucher USNM:632837 isolate B10K-DU-008-62 scaffold_154_2, whole genome shotgun sequence Chordeiles acutipennis (lesser nighthawk) ENA graphic
144
JACASE010000009.1 179.00 full 72,732,869 72,732,466 JACASE010000009.1 Rousettus aegyptiacus isolate mRouAeg1 scaffold_m13_p_9, whole genome shotgun sequence Rousettus aegyptiacus (Egyptian rousette) ENA graphic
145
MPIZ01117629.1 178.20 full 1,069 1,474 MPIZ01117629.1 Prolemur simus strain KIAN8.4 C250283, whole genome shotgun sequence Prolemur simus (greater bamboo lemur) ENA graphic
146
VXBP01000090.1 177.10 full 130,059 130,518 VXBP01000090.1 Rhinopomastus cyanomelas voucher USNM:642342 isolate B10K-DU-002-35 scaffold2556, whole genome shotgun sequence Rhinopomastus cyanomelas (common scimitar-bill) ENA graphic
147
CM013769.2 176.90 full 29,824,168 29,823,717 CM013769.2 Strigops habroptila isolate Jane chromosome 8, whole genome shotgun sequence Strigops habroptila (kakapo) ENA graphic
148
CM019066.1 176.70 full 122,365,096 122,365,515 CM019066.1 Leptobrachium leishanense isolate GZLS1 chromosome 4, whole genome shotgun sequence Leptobrachium leishanense (Leishan spiny toad) ENA graphic
149
VZUJ01071738.1 176.50 full 23,005 22,546 VZUJ01071738.1 Atlantisia rogersi isolate OUT-0055 NODE_12120_length_26047_cov_11.7051_ID_24239, whole genome shotgun sequence Atlantisia rogersi (inaccessible island rail) ENA graphic
150
NC_030685.2 176.10 full 64,076,474 64,076,038 NC_030685.2 Xenopus tropicalis strain Nigerian chromosome 9, UCB_Xtro_10.0, whole genome shotgun sequence Xenopus (Silurana) tropicalis (western clawed frog) ENA graphic
151
WAAF01005630.1 174.50 full 237,928 237,464 WAAF01005630.1 Tricholaema leucomelas voucher USNM:642560 isolate B10K-DU-002-37 scaffold348, whole genome shotgun sequence Tricholaema leucomelas (pied barbet) ENA graphic
152
VWZE01018317.1 172.10 full 561,279 560,798 VWZE01018317.1 Eubucco bourcierii voucher USNM:542831 isolate B10K-DU-001-04 scaffold1523, whole genome shotgun sequence Eubucco bourcierii (red-headed barbet) ENA graphic
153
VYZU01057603.1 171.50 full 531 1,012 VYZU01057603.1 Ceyx cyanopectus voucher USNM:607346 isolate B10K-DU-013-51 scaffold8606, whole genome shotgun sequence Alcedo cyanopecta ENA graphic
154
VXBD01007624.1 171.50 full 263,322 263,751 VXBD01007624.1 Indicator maculatus voucher USNM:630811 isolate B10K-DU-001-78 scaffold275, whole genome shotgun sequence Indicator maculatus ENA graphic
155
VZTQ01004941.1 171.20 full 318,907 318,449 VZTQ01004941.1 Pelecanoides urinatrix voucher UWBM:60517 isolate B10K-DU-012-45 scaffold1286, whole genome shotgun sequence Pelecanoides urinatrix ENA graphic
156
CM034086.1 169.40 full 255,472,873 255,473,267 CM034086.1 Eleutherodactylus coqui isolate HN-11 Male chromosome 1, whole genome shotgun sequence Eleutherodactylus coqui (Puerto Rican coqui) ENA graphic
157
WBNM01007933.1 168.70 full 13,063 12,590 WBNM01007933.1 Ramphastos sulfuratus voucher USNM:607736 isolate B10K-DU-001-30 scaffold1543, whole genome shotgun sequence Ramphastos sulfuratus ENA graphic
158
VZZU01000214.1 168.50 full 220,218 220,685 VZZU01000214.1 Nyctiprogne leucopyga voucher USNM:572514 isolate B10K-DU-005-01 scaffold_208, whole genome shotgun sequence Nyctiprogne leucopyga ENA graphic
159
CM034086.1 165.40 full 255,495,838 255,496,232 CM034086.1 Eleutherodactylus coqui isolate HN-11 Male chromosome 1, whole genome shotgun sequence Eleutherodactylus coqui (Puerto Rican coqui) ENA graphic
160
VWZL01004392.1 165.20 full 322,771 322,290 VWZL01004392.1 Stercorarius parasiticus voucher USNM:606730 isolate B10K-DU-001-20 scaffold581, whole genome shotgun sequence Stercorarius parasiticus ENA graphic
161
NW_023010877.1 164.20 full 9,904,954 9,905,395 NW_023010877.1 Pantherophis guttatus isolate EG266 unplaced genomic scaffold, UNIGE_PanGut_3.0 Super-Scaffold_82497, whole genome shotgun sequence Pantherophis guttatus ENA graphic
162
VWZD01004846.1 162.60 full 993,971 993,554 VWZD01004846.1 Sakesphorus luctuosus voucher USNM:562277 isolate B10K-DU-001-06 scaffold154, whole genome shotgun sequence Sakesphorus luctuosus ENA graphic
163
VZRF01010396.1 162.20 full 1,389,741 1,389,280 VZRF01010396.1 Vireo altiloquus voucher USNM:607205 isolate B10K-DU-001-22 scaffold169, whole genome shotgun sequence Vireo altiloquus (black-whiskered vireo) ENA graphic
164
PVHU020040205.1 161.70 full 597 838 PVHU020040205.1 Moschus moschiferus isolate BS20 Scw3uUT_40107;HRSCAF=143627, whole genome shotgun sequence Moschus moschiferus (Siberian musk deer) ENA graphic
165
CM012091.2 161.40 full 21,688,422 21,688,872 CM012091.2 Taeniopygia guttata isolate Black17 chromosome 9, whole genome shotgun sequence Taeniopygia guttata ENA graphic
166
BFAA01003180.1 161.00 full 22,807 22,252 BFAA01003180.1 Scyliorhinus torazame DNA, scf_scyto00003180, whole genome shotgun sequence Scyliorhinus torazame (cloudy catshark) ENA graphic
167
VZUG01033609.1 160.80 full 251,595 251,125 VZUG01033609.1 Calonectris borealis voucher personal:Jacob:6119913 isolate OUT-0025 scaffold1660, whole genome shotgun sequence Calonectris borealis (cory's shearwater) ENA graphic
168
NW_006501046.1 160.70 full 6,686,301 6,685,909 NW_006501046.1 Peromyscus maniculatus bairdii unplaced genomic scaffold, Pman_1.0 Scaffold10, whole genome shotgun sequence Peromyscus maniculatus bairdii (prairie deer mouse) ENA graphic
169
MUZQ01000058.1 160.50 full 2,395,074 2,395,511 Lonchura striata domestica isolate white83orange57 scaffold_57, whole genome shotgun sequence. Lonchura striata domestica (Bengalese finch) ENA graphic
170
PVHU020001267.1 160.40 full 3,300 3,541 PVHU020001267.1 Moschus moschiferus isolate BS20 Scw3uUT_1201;HRSCAF=77929, whole genome shotgun sequence Moschus moschiferus (Siberian musk deer) ENA graphic
171
VWPV01031006.1 160.20 full 3,224 3,667 VWPV01031006.1 Geococcyx californianus voucher LSUMZ:Ornithology:B58226 isolate B10K-CU-031-07 scaffold19720, whole genome shotgun sequence Geococcyx californianus ENA graphic
172
VWYK01068610.1 160.00 full 15,836 16,310 VWYK01068610.1 Semnornis frantzii voucher USNM:613303 isolate B10K-DU-001-42 scaffold10212, whole genome shotgun sequence Semnornis frantzii ENA graphic
173
KB017296.1 159.80 full 692,076 691,707 Camelus ferus unplaced genomic scaffold scaffold1066, whole genome shotgun sequence. Camelus ferus (Wild Bactrian camel) ENA graphic
174
VZRI01009526.1 159.70 full 1,040,333 1,040,827 VZRI01009526.1 Upupa epops voucher IZCAS:18810 isolate B10K-DU-012-37 scaffold66, whole genome shotgun sequence Upupa epops (Eurasian hoopoe) ENA graphic
175
VXBV01001447.1 158.40 full 1,044,548 1,044,079 VXBV01001447.1 Certhia brachydactyla voucher USNM:637436 isolate B10K-DU-002-20 scaffold1319, whole genome shotgun sequence Certhia brachydactyla ENA graphic
176
GL873603.1 158.20 full 7,332,980 7,332,636 Otolemur garnettii unplaced genomic scaffold scaffold00084, whole genome shotgun sequence. Otolemur garnettii (small-eared galago) ENA graphic
177
WEKY01046505.1 158.10 full 20,882 21,329 WEKY01046505.1 Picathartes gymnocephalus voucher LSUMZ:Ornithology:B30793 isolate B10K-DU-012-30 scaffold1381, whole genome shotgun sequence Picathartes gymnocephalus ENA graphic
178
VZTK01003485.1 157.40 full 909,195 909,652 VZTK01003485.1 Podargus strigoides voucher USNM:612703 isolate B10K-DU-001-40 scaffold2010, whole genome shotgun sequence Podargus strigoides (tawny frogmouth) ENA graphic
179
VYXC01001033.1 157.00 full 1,564,197 1,564,644 VYXC01001033.1 Platysteira castanea voucher USNM:627032 isolate B10K-DU-001-71 scaffold973, whole genome shotgun sequence Platysteira castanea ENA graphic
180
VYZA01000020.1 157.00 full 1,781,132 1,780,676 VYZA01000020.1 Neopipo cinnamomea voucher USNM:586435 isolate B10K-DU-004-15 scaffold_16, whole genome shotgun sequence Neopipo cinnamomea ENA graphic
181
VZTQ01004941.1 157.00 full 316,650 316,188 VZTQ01004941.1 Pelecanoides urinatrix voucher UWBM:60517 isolate B10K-DU-012-45 scaffold1286, whole genome shotgun sequence Pelecanoides urinatrix ENA graphic
182
VWPO01000075.1 156.60 full 24,752 24,270 VWPO01000075.1 Glareola pratincola voucher LSUMZ:Ornithology:B62518 isolate B10K-CU-031-08 scaffold_74, whole genome shotgun sequence Glareola pratincola ENA graphic
183
WBMZ01013919.1 156.50 full 18,743 18,299 WBMZ01013919.1 Atrichornis clamosus isolate B10K-DU-029-61 scaffold6366, whole genome shotgun sequence Atrichornis clamosus ENA graphic
184
WAAC01014171.1 156.10 full 6,771 6,290 WAAC01014171.1 Larus smithsonianus voucher USNM:641377 isolate B10K-DU-002-28 scaffold20827, whole genome shotgun sequence Larus smithsonianus ENA graphic
185
VZUD01000129.1 155.80 full 1,521,305 1,520,824 VZUD01000129.1 Cepphus grylle isolate OUT-0020 scaffold623_cov51, whole genome shotgun sequence Cepphus grylle ENA graphic
186
JH721904.1 155.50 full 18,108,737 18,109,125 JH721904.1 Chinchilla lanigera unplaced genomic scaffold scaffold00043, whole genome shotgun sequence Chinchilla lanigera ENA graphic
187
VWZT01001738.1 155.50 full 121,589 121,141 VWZT01001738.1 Pachycephala philippinensis voucher USNM:607512 isolate B10K-DU-001-28 scaffold2732, whole genome shotgun sequence Pachycephala philippinensis ENA graphic
188
VXAY01001561.1 155.10 full 4,171,912 4,172,380 VXAY01001561.1 Oxyruncus cristatus voucher USNM:632342 isolate B10K-DU-002-07 scaffold61, whole genome shotgun sequence Oxyruncus cristatus (sharpbill) ENA graphic
189
VZDJ01000301.1 154.90 full 7,807,899 7,808,360 VZDJ01000301.1 Cyanoderma ruficeps isolate SRU082 scaffold417_len11654140_cov47, whole genome shotgun sequence Stachyris ruficeps ENA graphic
190
VWYP01033786.1 154.90 full 881,418 881,875 VWYP01033786.1 Pycnonotus jocosus voucher USNM:643381 isolate B10K-DU-002-42 scaffold4137, whole genome shotgun sequence Pycnonotus jocosus ENA graphic
191
NC_040903.2 154.60 full 222,523 222,068 NC_040903.2 Phyllostomus discolor isolate MPI-MPIP mPhyDis1 chromosome 1, mPhyDis1.pri.v3, whole genome shotgun sequence Phyllostomus discolor (pale spear-nosed bat) ENA graphic
192
VZTN01033974.1 154.50 full 780,204 779,765 VZTN01033974.1 Erpornis zantholeuca voucher LSUMZ:Ornithology:B51177 isolate B10K-DU-002-58 scaffold78, whole genome shotgun sequence Erpornis zantholeuca ENA graphic
193
VWPS01000004.1 154.30 full 7,680,182 7,680,626 VWPS01000004.1 Menura novaehollandiae voucher USNM:632118 isolate B10K-CU-030-46 scaffold_3, whole genome shotgun sequence Menura novaehollandiae (superb lyrebird) ENA graphic
194
VXAH01000193.1 153.40 full 645,843 646,288 VXAH01000193.1 Piprites chloris voucher USNM:625579 isolate B10K-DU-007-02 scaffold_123_2, whole genome shotgun sequence Piprites chloris (white-winged piprites) ENA graphic
195
VXAI01000074.1 152.80 full 2,388,383 2,388,863 VXAI01000074.1 Rostratula benghalensis voucher USNM:613014 isolate B10K-DU-006-20 scaffold_70, whole genome shotgun sequence Rostratula benghalensis (greater painted-snipe) ENA graphic
196
VZUC01000002.1 152.80 full 4,251,334 4,251,814 VZUC01000002.1 Rissa tridactyla isolate OUT-0021 scaffold3_cov42, whole genome shotgun sequence Rissa tridactyla (black-legged kittiwake) ENA graphic
197
SWJQ01000270.1 152.60 full 1,885,717 1,885,254 SWJQ01000270.1 Zosterops borbonicus isolate HGM_15179 scaffold220_size2916324, whole genome shotgun sequence Zosterops borbonicus ENA graphic
198
VXBN01012033.1 152.50 full 1,267,098 1,267,561 VXBN01012033.1 Sinosuthora webbiana voucher USNM:633249 isolate B10K-DU-002-08 scaffold176, whole genome shotgun sequence Paradoxornis webbianus ENA graphic
199
VZSH01000034.1 152.30 full 3,052,174 3,051,713 VZSH01000034.1 Nothoprocta ornata isolate B10K-MSB-03 scaffold_30, whole genome shotgun sequence Nothoprocta ornata ENA graphic
200
VZRG01000161.1 152.00 full 8,356 8,815 VZRG01000161.1 Erythrocercus mccallii voucher LSUMZ:Ornithology:B45295 isolate B10K-DU-002-60 scaffold_159, whole genome shotgun sequence Erythrocercus mccallii ENA graphic
201
NW_024104359.1 151.60 full 166,378 166,829 NW_024104359.1 Pipra filicauda isolate LSUMZ 115617 unplaced genomic scaffold, ASM394559v2 scaffold244_size1468961_pilon, whole genome shotgun sequence Pipra filicauda ENA graphic
202
VXAU01004203.1 151.50 full 306,560 306,078 VXAU01004203.1 Formicarius rufipectus voucher USNM:613308 isolate B10K-DU-001-43 scaffold317, whole genome shotgun sequence Formicarius rufipectus ENA graphic
203
VWYL01027248.1 150.70 full 829,856 830,319 VWYL01027248.1 Zosterops hypoxanthus voucher USNM:608699 isolate B10K-DU-001-36 scaffold1050, whole genome shotgun sequence Zosterops hypoxanthus ENA graphic
204
CM019151.1 150.70 full 169,292,620 169,292,183 CM019151.1 Naja naja isolate NN01 chromosome 4, whole genome shotgun sequence Naja naja ENA graphic
205
QVOM02000058.1 150.40 full 97,643,511 97,643,075 QVOM02000058.1 Salvator merianae strain LG2117 Scaffold_58, whole genome shotgun sequence Tupinambis merianae ENA graphic
206
EF523390.1 150.30 full 141,612 141,170 Gallid herpesvirus 2 strain RB-1B, complete genome. Gallid herpesvirus 2 (Marek's disease virus type 1) ENA graphic
207
EF523390.1 150.30 full 729 1,171 Gallid herpesvirus 2 strain RB-1B, complete genome. Gallid herpesvirus 2 (Marek's disease virus type 1) ENA graphic
208
PTEW01000005.1 149.50 full 4,035,331 4,034,868 PTEW01000005.1 Nothoprocta perdicaria voucher ROM:ORN:Ctin4 isolate Ctin4 scaffold_4, whole genome shotgun sequence Nothoprocta perdicaria ENA graphic
209
VWYY01000494.1 149.50 full 228,486 228,941 VWYY01000494.1 Ptilorrhoa leucosticta voucher C:138661 isolate B10K-CU-031-17 scaffold_488, whole genome shotgun sequence Ptilorrhoa leucosticta ENA graphic
210
WEIY01000060.1 149.50 full 1,093,190 1,093,647 WEIY01000060.1 Pteruthius melanotis isolate B10K-IZ-033-77 scaffold_40_2, whole genome shotgun sequence Pteruthius melanotis ENA graphic
211
AF243438.1 149.40 full 139,944 139,503 Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome. Marek's disease herpesvirus type 1 strain MD5 ENA graphic
212
AF243438.1 149.40 full 1,676 2,117 Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome. Marek's disease herpesvirus type 1 strain MD5 ENA graphic
213
VXBY01000438.1 149.20 full 303,346 303,810 VXBY01000438.1 Leiothrix lutea voucher USNM:643454 isolate B10K-DU-002-43 scaffold_430, whole genome shotgun sequence Leiothrix lutea (red-billed leiothrix) ENA graphic
214
VZSE01000213.1 148.90 full 3,546,111 3,546,559 VZSE01000213.1 Promerops cafer isolate B10K-UC-030-53 scaffold20, whole genome shotgun sequence Promerops cafer (Cape sugarbird) ENA graphic
215
VZSL01000004.1 148.60 full 8,145,394 8,145,857 VZSL01000004.1 Sylvia atricapilla isolate OUT-0013 Super-Scaffold_3, whole genome shotgun sequence Sylvia atricapilla (blackcap) ENA graphic
216
NW_013658602.1 148.60 full 292,439 292,876 NW_013658602.1 Thamnophis sirtalis isolate EDBJR-23777 unplaced genomic scaffold, Thamnophis_sirtalis-6.0 Scaffold922, whole genome shotgun sequence Thamnophis sirtalis ENA graphic
217
VZTR01023963.1 148.30 full 261,351 261,797 VZTR01023963.1 Chaetops frenatus voucher UWBM:52975 isolate B10K-DU-012-41 scaffold1371, whole genome shotgun sequence Chaetops frenatus (Rufous rock-jumper) ENA graphic
218
VXBF01015703.1 148.20 full 493,244 492,796 VXBF01015703.1 Oenanthe oenanthe voucher USNM:627655 isolate B10K-DU-001-74 scaffold159, whole genome shotgun sequence Oenanthe oenanthe (Northern wheatear) ENA graphic
219
VZTD01000671.1 147.90 full 298,803 298,356 VZTD01000671.1 Rhagologus leucostigma isolate B10K-DU-029-40 scaffold91, whole genome shotgun sequence Rhagologus leucostigma ENA graphic
220
VZSB01003388.1 147.70 full 4,925,287 4,924,817 VZSB01003388.1 Caloenas nicobarica isolate OUT-0007 ScfYJcd_319, whole genome shotgun sequence Caloenas nicobarica ENA graphic
221
CM014239.1 147.40 full 28,699,230 28,699,637 CM014239.1 Rhinolophus ferrumequinum isolate MPI-CBG mRhiFer1 chromosome 14, whole genome shotgun sequence Rhinolophus ferrumequinum (greater horseshoe bat) ENA graphic
222
VZRD01000073.1 147.40 full 3,000,748 3,001,198 VZRD01000073.1 Tachuris rubrigastra voucher LSUMZ:Ornithology:B48222 isolate B10K-CU-031-13 scaffold_71, whole genome shotgun sequence Tachuris rubrigastra ENA graphic
223
QJSC01022279.1 146.90 full 1,497,421 1,496,923 QJSC01022279.1 Calidris pygmaea strain Meinypilgyno scaf_16960, whole genome shotgun sequence Eurynorhynchus pygmeus ENA graphic
224
NW_016690322.1 146.70 full 2,234,400 2,234,850 NW_016690322.1 Lepidothrix coronata isolate B3197 unplaced genomic scaffold, Lepidothrix_coronata-1.0 Scaffold142, whole genome shotgun sequence Lepidothrix coronata ENA graphic
225
SJPD01000035.1 146.60 full 8,921,621 8,922,042 SJPD01000035.1 Varanus komodoensis strain SLA01 scaffold28, whole genome shotgun sequence Varanus komodoensis ENA graphic
226
VZRZ01003282.1 146.50 full 303,530 303,090 VZRZ01003282.1 Climacteris rufus voucher MVMA:354 isolate B10K-DU-029-53 scaffold1734, whole genome shotgun sequence Climacteris rufa (rufous treecreeper) ENA graphic
227
VZUA01401161.1 146.00 full 475 934 VZUA01401161.1 Horornis vulcanius voucher LSUMZ:Ornithology:B52647 isolate B10K-DU-029-69 C13701689, whole genome shotgun sequence Horornis vulcanius ENA graphic
228
NIFN02008794.1 145.80 full 24,326,986 24,327,492 NIFN02008794.1 Strix occidentalis caurina voucher CAS:ORN:98821 isolate Sequoia Super-Scaffold_12_obj, whole genome shotgun sequence Strix occidentalis caurina ENA graphic
229
AZIM01000241.1 145.40 full 483,095 483,530 Ophiophagus hannah scaffold241.1, whole genome shotgun sequence. Ophiophagus hannah (king cobra) ENA graphic
230
WEIW01000967.1 145.20 full 287,929 288,399 WEIW01000967.1 Chloropsis hardwickii isolate B10K-IZ-033-78 scaffold_877, whole genome shotgun sequence Chloropsis hardwickii ENA graphic
231
VZUI01037144.1 145.20 full 16,852 17,314 VZUI01037144.1 Cettia cetti isolate OUT-0056 NODE_9402_length_34282_cov_13.0085_ID_18803, whole genome shotgun sequence Cettia cetti ENA graphic
232
QUSF01000026.1 145.00 full 1,328,302 1,327,848 QUSF01000026.1 Chloebia gouldiae isolate Red01 scaffold_26, whole genome shotgun sequence Erythrura gouldiae (Gouldian finch) ENA graphic
233
HG009219.1 144.80 full 3,809,983 3,809,537 HG009219.1 Serinus canaria genomic scaffold, SCA1_u11, whole genome shotgun sequence Serinus canaria (common canary) ENA graphic
234
CM040314.1 144.70 full 21,613,571 21,614,022 CM040314.1 Lamprotornis superbus isolate SS15 chromosome 9, whole genome shotgun sequence Lamprotornis superbus ENA graphic
235
VWYI01048803.1 144.20 full 299,954 299,498 VWYI01048803.1 Anthoscopus minutus voucher USNM:642205 isolate B10K-DU-011-42 scaffold8882, whole genome shotgun sequence Anthoscopus minutus ENA graphic
236
VZSS01000017.1 144.10 full 14,830,484 14,830,935 VZSS01000017.1 Poecile atricapillus voucher CUMV:Bird:55912 isolate OUT-0023 scaffold_11, whole genome shotgun sequence Poecile atricapilla (Black-capped chickadee) ENA graphic
237
ULFR01000030.1 144.00 full 8,038,051 8,038,489 ULFR01000030.1 Pseudonaja textilis genome assembly, contig: phap_PSETE__EBS10XV2PHAP194, whole genome shotgun sequence Pseudonaja textilis ENA graphic
238
WBNE01000058.1 144.00 full 3,922,993 3,922,535 WBNE01000058.1 Copsychus sechellarum isolate OUT-0061 scaffold_16, whole genome shotgun sequence Copsychus sechellarum ENA graphic
239
CM020345.1 143.90 full 22,518,863 22,519,313 CM020345.1 Catharus ustulatus isolate bCatUst1 chromosome 10, whole genome shotgun sequence Catharus ustulatus ENA graphic
240
VWZV01012212.1 143.80 full 759,421 758,973 VWZV01012212.1 Irena cyanogastra voucher USNM:607434 isolate B10K-DU-001-26 scaffold238, whole genome shotgun sequence Irena cyanogaster ENA graphic
241
VZTP01040065.1 143.30 full 287 733 VZTP01040065.1 Prunella fulvescens voucher UWBM:57993 isolate B10K-DU-012-46 scaffold7155, whole genome shotgun sequence Prunella fulvescens ENA graphic
242
WAAG01071076.1 143.10 full 113,322 112,865 WAAG01071076.1 Tichodroma muraria voucher UWBM:61504 isolate B10K-DU-012-47 scaffold17291, whole genome shotgun sequence Tichodroma muraria ENA graphic
243
VZRT01000002.1 142.90 full 572,569 573,027 VZRT01000002.1 Panurus biarmicus voucher UWBM:59726 isolate B10K-DU-030-18 scaffold_1, whole genome shotgun sequence Panurus biarmicus ENA graphic
244
VZSR01000247.1 142.70 full 3,704,131 3,703,674 VZSR01000247.1 Brachypodius atriceps voucher LSUMZ:Ornithology:B50336 isolate OUT-0037 Sct0y12_247, whole genome shotgun sequence Pycnonotus atriceps ENA graphic
245
WBNL01000214.1 142.60 full 303,625 303,135 WBNL01000214.1 Calcarius ornatus voucher USNM:641413 isolate B10K-DU-015-28 scaffold_211, whole genome shotgun sequence Calcarius ornatus ENA graphic
246
VXBI01002031.1 142.30 full 961,031 960,576 VXBI01002031.1 Toxostoma redivivum voucher USNM:636895 isolate B10K-DU-002-15 scaffold1236, whole genome shotgun sequence Toxostoma redivivum ENA graphic
247
VWZP01006975.1 142.10 full 19,581 19,134 VWZP01006975.1 Dicaeum eximium voucher USNM:608695 isolate B10K-DU-001-34 scaffold1004, whole genome shotgun sequence Dicaeum eximium ENA graphic
248
CM000996.3 142.00 full 30,649,906 30,649,495 CM000996.3 Mus musculus chromosome 3, GRCm39 reference primary assembly C57BL/6J Mus musculus (house mouse) ENA graphic
249
VZRV01007514.1 141.90 full 98,657 99,113 VZRV01007514.1 Falcunculus frontatus voucher MVMA:020 isolate B10K-DU-029-77 scaffold3109, whole genome shotgun sequence Falcunculus frontatus (crested shrike-tit) ENA graphic
250
KN976777.1 141.50 full 1,035,078 1,035,365 KN976777.1 Mandrillus leucophaeus isolate KB7577 unplaced genomic scaffold Scaffold452, whole genome shotgun sequence Mandrillus leucophaeus (drill) ENA graphic
251
VWZS01010331.1 141.40 full 1,275,889 1,275,438 VWZS01010331.1 Rhabdornis inornatus voucher USNM:607544 isolate B10K-DU-001-29 scaffold1348, whole genome shotgun sequence Rhabdornis inornatus ENA graphic
252
MCFN01000925.1 141.10 full 51,881 52,364 Callipepla squamata strain Texas jcf7180005233987, whole genome shotgun sequence. Callipepla squamata (scaled quail) ENA graphic
253
WBNG01000012.1 140.50 full 4,468,246 4,468,821 WBNG01000012.1 Elachura formosa voucher IZCAS:20218 isolate B10K-IZCAS-20218 scaffold_8, whole genome shotgun sequence Elachura formosa (spotted wren-babbler) ENA graphic
254
VZTT01034730.1 140.40 full 6,536 6,986 VZTT01034730.1 Buphagus erythrorhynchus voucher KANU:26688 isolate B10K-DU-012-02 scaffold43567, whole genome shotgun sequence Buphagus erythrorhynchus (red-billed oxpecker) ENA graphic
255
VYZK01000052.1 140.00 full 938,430 937,984 VYZK01000052.1 Prunella himalayana voucher USNM:616447 isolate B10K-DU-013-18 scaffold_51, whole genome shotgun sequence Prunella himalayana ENA graphic
256
JH167478.1 139.90 full 706,287 706,475 JH167478.1 Heterocephalus glaber unplaced genomic scaffold scaffold2462, whole genome shotgun sequence Heterocephalus glaber (naked mole-rat) ENA graphic
257
CM008039.1 139.80 full 49,601,871 49,602,150 CM008039.1 Cervus elaphus hippelaphus isolate Hungarian chromosome 32, whole genome shotgun sequence Cervus elaphus hippelaphus ENA graphic
258
VWYX01000544.1 139.80 full 41,084 40,573 VWYX01000544.1 Chaetorhynchus papuensis voucher C:163925 isolate B10K-CU-031-19 scaffold_539, whole genome shotgun sequence Chaetorhynchus papuensis (pygmy drongo) ENA graphic
259
VXAC01008246.1 139.70 full 3,089 3,553 VXAC01008246.1 Rhipidura dahli voucher USNM:616255 isolate B10K-DU-001-49 scaffold2277, whole genome shotgun sequence Rhipidura dahli ENA graphic
260
VZRL01002082.1 139.60 full 272,306 272,766 VZRL01002082.1 Origma solitaria voucher MVMA:3525 isolate B10K-DU-029-52 scaffold888, whole genome shotgun sequence Origma solitaria ENA graphic
261
VYZS01338999.1 139.40 full 869 1,348 VYZS01338999.1 Neodrepanis coruscans voucher FMNH:AVES:345711 isolate B10K-DU-002-79 C19836625, whole genome shotgun sequence Neodrepanis coruscans (wattled asity) ENA graphic
262
NOIK01000199.1 139.40 full 1,532,246 1,531,606 NOIK01000199.1 Anas zonorhyncha breed spot-billed scaffold201, whole genome shotgun sequence Anas zonorhyncha ENA graphic
263
WBNP01005481.1 139.30 full 172,585 173,049 WBNP01005481.1 Passerina amoena isolate OUT-0017 scaffold12107, whole genome shotgun sequence Passerina amoena ENA graphic
264
PPHD01038320.1 139.20 full 6,327 6,791 PPHD01038320.1 Bambusicola thoracicus isolate RTK389 B.A.C_38319, whole genome shotgun sequence Bambusicola thoracica (Chinese bamboo-partridge) ENA graphic
265
VZTH01005965.1 139.10 full 281,186 281,641 VZTH01005965.1 Aleadryas rufinucha isolate B10K-DU-029-36 scaffold2174, whole genome shotgun sequence Aleadryas rufinucha (rufous-naped whistler) ENA graphic
266
VWYD01016125.1 138.90 full 26,158 25,708 VWYD01016125.1 Catharus fuscescens voucher USNM:587444 isolate B10K-DU-001-17 scaffold3883, whole genome shotgun sequence Catharus fuscescens ENA graphic
267
BHFT01083157.1 138.60 full 40,324 40,757 BHFT01083157.1 Laticauda laticaudata KUZ Laticauda laticaudata (blue-ringed sea krait) ENA graphic
268
VXAD01002609.1 138.40 full 2,812,738 2,813,194 VXAD01002609.1 Dicrurus megarhynchus voucher USNM:616063 isolate B10K-DU-001-48 scaffold324, whole genome shotgun sequence Dicrurus megarhynchus ENA graphic
269
VWZP01015815.1 138.10 full 2 446 VWZP01015815.1 Dicaeum eximium voucher USNM:608695 isolate B10K-DU-001-34 C13276256, whole genome shotgun sequence Dicaeum eximium ENA graphic
270
VZST01001037.1 137.90 full 163,950 164,407 VZST01001037.1 Acrocephalus arundinaceus voucher personal:Bengt Hansson:3553254(H9-23) isolate OUT-0054 scaffold_1046, whole genome shotgun sequence Acrocephalus arundinaceus (great reed warbler) ENA graphic
271
WBNB01000373.1 137.60 full 45,592 46,041 WBNB01000373.1 Vidua chalybeata voucher MSB:Bird:30254 isolate OUT-0048 scaffold537, whole genome shotgun sequence Vidua chalybeata ENA graphic
272
CM000939.1 137.50 full 8,008,751 8,009,155 Anolis carolinensis chromosome 3, whole genome shotgun sequence. Anolis carolinensis (green anole) ENA graphic
273
WAAB01004161.1 137.30 full 267,480 267,923 WAAB01004161.1 Piaya cayana voucher USNM:632527 isolate B10K-DU-008-47 scaffold477, whole genome shotgun sequence Piaya cayana (squirrel cuckoo) ENA graphic
274
WAAB01004161.1 137.30 full 269,655 270,098 WAAB01004161.1 Piaya cayana voucher USNM:632527 isolate B10K-DU-008-47 scaffold477, whole genome shotgun sequence Piaya cayana (squirrel cuckoo) ENA graphic
275
QZWQ01000147.1 137.20 full 523,386 523,852 QZWQ01000147.1 Pavo cristatus isolate SKPea2016_SI scaffold152_len598757_cov0, whole genome shotgun sequence Pavo cristatus (Indian peafowl) ENA graphic
276
CM000374.1 137.10 full 232,545,447 232,544,953 Monodelphis domestica chromosome 7, whole genome shotgun sequence. Monodelphis domestica (gray short-tailed opossum) ENA graphic
277
WBND01000612.1 137.10 full 238,994 239,447 WBND01000612.1 Cercotrichas coryphoeus isolate OUT-0024 scaffold_547, whole genome shotgun sequence Cercotrichas coryphoeus (Karoo scrub-robin) ENA graphic
278
CM000374.1 137.00 full 232,607,784 232,608,275 Monodelphis domestica chromosome 7, whole genome shotgun sequence. Monodelphis domestica (gray short-tailed opossum) ENA graphic
279
VWYW01000020.1 136.90 full 145,796 145,352 VWYW01000020.1 Smithornis capensis voucher C:138652 isolate B10K-CU-031-20 scaffold_18, whole genome shotgun sequence Smithornis capensis ENA graphic
280
VZRM01004286.1 136.70 full 297,387 296,947 VZRM01004286.1 Grantiella picta voucher MVMA:2672 isolate B10K-DU-029-50 scaffold338, whole genome shotgun sequence Grantiella picta ENA graphic
281
VWZM01008743.1 136.50 full 781,209 781,656 VWZM01008743.1 Loxia leucoptera voucher USNM:601821 isolate B10K-DU-001-19 scaffold2168, whole genome shotgun sequence Loxia leucoptera ENA graphic
282
VZSM01005724.1 136.40 full 605,403 604,956 VZSM01005724.1 Loxia curvirostra voucher UWYMV:Bird:2860 isolate OUT-0011 scaffold492, whole genome shotgun sequence Loxia curvirostra ENA graphic
283
VZTO01019064.1 136.20 full 62,147 62,620 VZTO01019064.1 Syrrhaptes paradoxus voucher USNM:586725 isolate B10K-DU-003-42 scaffold341, whole genome shotgun sequence Syrrhaptes paradoxus (Pallas's sandgrouse) ENA graphic
284
VWYN01013755.1 136.00 full 83,988 84,445 VWYN01013755.1 Hippolais icterina voucher USNM:637402 isolate B10K-DU-002-18 scaffold12112, whole genome shotgun sequence Hippolais icterina (icterine warbler) ENA graphic
285
NW_020716611.1 135.90 full 43,885,855 43,885,419 NW_020716611.1 Notechis scutatus unplaced genomic scaffold, TS10Xv2-PRI ULFQ01000001.1, whole genome shotgun sequence Notechis scutatus ENA graphic
286
VZZX01004843.1 135.80 full 2,191,062 2,191,519 VZZX01004843.1 Hirundo rustica voucher USNM:626475 isolate B10K-DU-001-67 scaffold53, whole genome shotgun sequence Hirundo rustica (Barn swallow) ENA graphic
287
VZTX01018267.1 135.50 full 3,063 3,524 VZTX01018267.1 Pardalotus punctatus voucher MVMA:289 isolate B10K-DU-029-51 scaffold21206, whole genome shotgun sequence Pardalotus punctatus (spotted pardalote) ENA graphic
288
VXAN01000046.1 135.50 full 4,416,373 4,416,830 VXAN01000046.1 Sylvietta virens voucher USNM:642858 isolate B10K-DU-009-59 scaffold_37, whole genome shotgun sequence Sylvietta virens (green crombec) ENA graphic
289
VZSK01000402.1 135.30 full 1,641,695 1,641,244 VZSK01000402.1 Erithacus rubecula isolate OUT-0015 sc0000022_2, whole genome shotgun sequence Erithacus rubecula (European robin) ENA graphic
290
LR595705.1 135.10 full 3,861,597 3,861,144 LR595705.1 Camarhynchus parvulus genome assembly, chromosome: 9, whole genome shotgun sequence Camarhynchus parvulus ENA graphic
291
CM021223.1 135.00 full 35,396,914 35,397,202 CM021223.1 Cervus hanglu yarkandensis isolate CEY-2017 chromosome 32, whole genome shotgun sequence Cervus elaphus yarkandensis ENA graphic
292
LR735556.1 134.90 full 27,712,180 27,711,683 LR735556.1 Sarcophilus harrisii genome assembly, chromosome: 3 Sarcophilus harrisii (Tasmanian devil) ENA graphic
293
VZRR01007610.1 134.70 full 218,635 219,090 VZRR01007610.1 Oreocharis arfaki isolate B10K-DU-029-42 scaffold2557, whole genome shotgun sequence Oreocharis arfaki ENA graphic
294
QRBI01000134.1 134.70 full 3,960,635 3,960,178 QRBI01000134.1 Hirundo rustica rustica isolate Chelidonia Super-Scaffold_43, whole genome shotgun sequence Hirundo rustica rustica ENA graphic
295
QGOO02000013.1 134.40 full 26,683,283 26,682,878 QGOO02000013.1 Mus spicilegus strain ZRU musp714_scaffold_00013b, whole genome shotgun sequence Mus spicilegus (steppe mouse) ENA graphic
296
VXAZ01007116.1 134.40 full 300,423 299,977 VXAZ01007116.1 Gymnorhina tibicen voucher USNM:632142 isolate B10K-DU-002-05 scaffold1099, whole genome shotgun sequence Cracticus tibicen (Australian magpie) ENA graphic
297
VXAX01005547.1 134.20 full 617,492 617,940 VXAX01005547.1 Leptocoma aspasia voucher USNM:608697 isolate B10K-DU-001-35 scaffold1224, whole genome shotgun sequence Leptocoma aspasia ENA graphic
298
VXBU01001756.1 134.10 full 1,341,717 1,341,261 VXBU01001756.1 Bombycilla garrulus voucher USNM:638986 isolate B10K-DU-002-23 scaffold40, whole genome shotgun sequence Bombycilla garrulus ENA graphic
299
VWYZ01000008.1 133.90 full 2,099,697 2,099,248 VWYZ01000008.1 Rhodinocichla rosea voucher LSUMZ:Ornithology:B26906 isolate B10K-CU-031-12 scaffold_5, whole genome shotgun sequence Rhodinocichla rosea ENA graphic
300
LR735556.1 133.70 full 27,752,906 27,753,403 LR735556.1 Sarcophilus harrisii genome assembly, chromosome: 3 Sarcophilus harrisii (Tasmanian devil) ENA graphic

Note: this table contains only the first 300 sequences.

Alignment

There are various ways to view or download the seed alignments that we store. You can use a sequence viewer to look at them, or you can look at a plain text version of the sequence in a variety of different formats. More...

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Formatting options

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Alignment format:
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Download

Download a gzip-compressed, Stockholm-format file containing the seed alignment for this family. You may find RALEE useful when viewing sequence alignments.

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Secondary structure

This section shows a variety of different secondary structure representations for this family. More...

You can view the secondary structure of the family using the VARNA applet. You can see more information about VARNA iself here.

Current Rfam structure

26 out of 106 basepairs are significant at E-value=0.05

R G R Y Y C U A A C C C U A A C U Y U C G C C G C U G U U U U Y U G C U G A C U U U C A G C G R G C R A R A G C R R C A A A A A Y G U C A G C Y R R Y C Y C C Y G Y Y Y Y Y Y C C C C Y A G G C C G C G G U C R G C C G G Y Y C R Y U G C Y G Y C G C G A A G A G U G C U C U G U C A G C C G G G R R G G G C R G G R A R A G A A G A R C Y Y Y G Y Y C C C U G A G C U G U G G G R G C R Y R G Y U C A C A Y pk_1 pk_1 5' pk_1 G C U G A C U U U A A A Y G U C A G C

R-scape optimised structure

27 out of 175 basepairs are significant at E-value=0.05

R G R Y Y C U A A C C C U A A C U Y U C G C C G C U G U U U U Y U G C U G A C U U U C A G C G R G C R A R A G C R R C A A A A A Y G U C A G C Y R R Y C Y C C Y G Y Y Y Y Y Y C C C C Y A G G C C G C G G U C R G C C G G Y Y C R Y U G C Y G Y C G C G A A G A G U G C U C U G U C A G C C G G G R R G G G C R G G R A R A G A A G A R C Y Y Y G Y Y C C C U G A G C U G U G G G R G C R Y R G Y U C A C A Y pk_1 pk_1 5' pk_1 G A C U U U A A Y G U C
  • Colours
  •  Statistically significant basepair with covariation
  •  97% conserved nucleotide
  •  90% conserved nucleotide
  •  75% conserved nucleotide
  •  50% conserved nucleotide
  • Nucleotides
  • R: A or G
  • Y: C or U

Tip: The diagrams are interactive:
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R-scape is a method for testing whether covariation analysis supports the presence of a conserved RNA secondary structure. This page shows R-scape analysis of the secondary structure from the Rfam seed alignment and a new structure with covariation support that is compatible with the same alignment.

To find out more about the method, see the R-scape paper by Rivas et al., 2016. The structures are visualised using R2R.

Species distribution

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Lineage

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Colour assignments

Archea Archea Eukaryota Eukaryota
Bacteria Bacteria Other sequences Other sequences
Viruses Viruses Unclassified Unclassified
Viroids Viroids Unclassified sequence Unclassified sequence

Selections

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This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the adjacent tab. More...

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The tree shows the occurrence of this RNA across different species. More...

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Trees

This page displays the predicted phylogenetic tree for the alignment. More...

This tree was built using the fasttree method.

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Note: You can also download the data file for the seed tree.

Structures

For those sequences which have a structure in the Protein DataBank, we generate a mapping between EMBL, PDB and Rfam coordinate systems. The table below shows the structures on which the Telomerase-vert family has been found.

Original order PDB ID PDB chain ID PDB Residues Bit score View
0 7TRE B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
1 7QXS B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
2 7V9A R 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
3 7BG9 B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
4 7TRD B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
5 8OUE B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
6 7QXB B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
7 7TRF B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
8 7TRC B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
9 7BGB B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
10 8OUF B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
11 7QXA B 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB
12 7V99 R 14 - 451 306.90 PDBe | RCSB PDB | PDBj | NDB

Motif matches

There are 7 motifs which match this family.

This section shows the Rfam motifs that match sequences within the seed alignment of this family. Users should be aware that the motifs are structural constructs and do not necessarily conform to taxonomic boundaries in the way that Rfam families do. More...

Original order Motif Accession Motif Description Number of Hits Fraction of Hits Sum of Bits Image
7 RM00003 C-loop motif 8 0.216 92.5 Match Image
7 RM00004 CRC binding motif 5 0.135 48.2 Match Image
7 RM00005 CsrA/RsmA binding motif 12 0.324 115.4 Match Image
7 RM00008 GNRA tetraloop 14 0.378 179.1 Match Image
7 RM00010 Kink turn 1, 3' bulge 27 0.730 350.4 Match Image
7 RM00029 UNCG tetraloop 21 0.568 237.4 Match Image
7 RM00030 U-turn motif 4 0.108 47.5 Match Image

References

This section shows the database cross-references that we have for this Rfam family.

Literature references

  1. Chen JL, Blasco MA, Greider CW Cell 2000;100:503-514. Secondary structure of vertebrate telomerase RNA. PUBMED:10721988

  2. Antal M, Boros E, Solymosy F, Kiss T Nucleic Acids Res 2002;30:912-920. Analysis of the structure of human telomerase RNA in vivo. PUBMED:11842102

  3. Fragnet L, Kut E, Rasschaert D J Biol Chem. 2005;280:23502-23515. Comparative functional study of the viral telomerase RNA based on natural mutations. PUBMED:15811851

External database links

Curation and family details

This section shows the detailed information about the Rfam family. We're happy to receive updated or improved alignments for new or existing families. Submit your new alignment and we'll take a look.

Curation

Seed source Machado Lima A
Structure source Published; PMID:10721988; Machado Lima A
Type Gene;
Author Machado Lima A
Alignment details
Alignment Number of
sequences
full 523
seed 37

Model information

Build commands
cmbuild -F CM SEED
cmcalibrate --mpi CM
Search command
cmsearch --cpu 4 --verbose --nohmmonly -T 19.69 -Z 2958934 CM SEQDB
Gathering cutoff 70.0
Trusted cutoff 70.0
Noise cutoff 69.9
Covariance model Download
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