Summary
Clan
This family is a member of clan (CL00004), which contains the following 4 members:
Sacc_telomerase Telomerase-cil Telomerase-vert Telomerase_AscoWikipedia annotation Edit Wikipedia article
The Rfam group coordinates the annotation of Rfam families in Wikipedia. This family is described by a Wikipedia entry Telomerase RNA component. More...
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Sequences
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Table preview (300 out of 560 sequence regions)
Original order | Download FASTA | Accession | Bit score | Type | Start | End | Description | Species | View context |
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0 | AF221915.1 | N/A | seed | 120 | 667 | Rhizoprionodon porosus telomerase RNA gene, sequence. | Rhizoprionodon porosus (Caribbean sharpnose shark) | ||
1 | AF221933.1 | N/A | seed | 121 | 679 | Mustelus canis telomerase RNA gene, sequence. | Mustelus canis (smooth dogfish) | ||
2 | AF221919.1 | N/A | seed | 107 | 614 | Dasyurus hallucatus telomerase RNA gene, sequence. | Dasyurus hallucatus (northern quoll) | ||
3 | AF221914.1 | N/A | seed | 112 | 589 | Dasyatis sabina telomerase RNA gene, sequence. | Dasyatis sabina (Atlantic stingray) | ||
4 | AF221935.1 | N/A | seed | 112 | 602 | Rhinoptera bonasus telomerase RNA gene, sequence. | Rhinoptera bonasus | ||
5 | AF221908.1 | N/A | seed | 136 | 584 | Xenopus laevis telomerase RNA gene, sequence. | Xenopus laevis (African clawed frog) | ||
6 | AF221913.1 | N/A | seed | 109 | 520 | Bufo japonicus telomerase RNA gene, sequence. | Bufo japonicus (Japanese toad) | ||
7 | AF221926.1 | N/A | seed | 103 | 507 | Ceratophrys ornata telomerase RNA gene, sequence. | Ceratophrys ornata (ornate horned frog) | ||
8 | AF221940.1 | N/A | seed | 103 | 499 | Pyxicephalus adspersus telomerase RNA gene, sequence. | Pyxicephalus adspersus | ||
9 | AF221934.1 | N/A | seed | 121 | 565 | Dermophis mexicanus telomerase RNA gene, sequence. | Dermophis mexicanus | ||
10 | AF221927.1 | N/A | seed | 113 | 556 | Herpele squalostoma telomerase RNA gene, sequence. | Herpele squalostoma | ||
11 | AF221910.1 | N/A | seed | 112 | 554 | Typhlonectes natans telomerase RNA gene, sequence. | Typhlonectes natans (Rio Cauca caecilian) | ||
12 | AF221932.1 | N/A | seed | 102 | 549 | Elephas maximus telomerase RNA gene, sequence. | Elephas maximus (Asiatic elephant) | ||
13 | AF221923.1 | N/A | seed | 106 | 554 | Trichechus manatus telomerase RNA gene, sequence. | Trichechus manatus (Caribbean manatee) | ||
14 | AF221918.1 | N/A | seed | 97 | 547 | Oryctolagus cuniculus telomerase RNA gene, sequence. | Oryctolagus cuniculus (rabbit) | ||
15 | AF221929.1 | N/A | seed | 92 | 517 | Cavia porcellus telomerase RNA gene, sequence. | Cavia porcellus (Domestic guinea pig) | ||
16 | AF221937.1 | N/A | seed | 99 | 545 | Chinchilla brevicaudata telomerase RNA gene, sequence. | Chinchilla brevicaudata (chinchilla) | ||
17 | AF221930.1 | N/A | seed | 94 | 546 | Geomys breviceps telomerase RNA gene, sequence. | Geomys breviceps | ||
18 | AF221909.1 | N/A | seed | 98 | 496 | Microtus ochrogaster telomerase RNA gene, sequence. | Microtus ochrogaster (prairie vole) | ||
19 | AF221928.1 | N/A | seed | 95 | 476 | Cricetulus griseus telomerase RNA gene, sequence. | Cricetulus griseus (Chinese hamster) | ||
20 | AC121792.3 | N/A | seed | 109,554 | 109,950 | Mus musculus BAC clone RP23-404J7 from 3, complete sequence. | Mus musculus (house mouse) | ||
21 | AF221916.1 | N/A | seed | 94 | 481 | Rattus norvegicus telomerase RNA gene, sequence. | Rattus norvegicus (Norway rat) | ||
22 | AY058901.1 | N/A | seed | 1 | 397 | Mus spretus telomerase RNA, genomic sequence. | Mus spretus (western wild mouse) | ||
23 | U85256.1 | N/A | seed | 1 | 451 | Human telomerase RNA, partial sequence. | Homo sapiens (human) | ||
24 | AF221912.1 | N/A | seed | 98 | 564 | Tupaia glis belangeri telomerase RNA gene, sequence. | Tupaia belangeri (northern tree shrew) | ||
25 | AF221939.1 | N/A | seed | 99 | 544 | Felis catus telomerase RNA gene, sequence. | Felis catus (domestic cat) | ||
26 | AF221931.1 | N/A | seed | 99 | 541 | Mustela putorius furo telomerase RNA gene, sequence. | Mustela putorius furo (domestic ferret) | ||
27 | AF221917.1 | N/A | seed | 99 | 542 | Procyon lotor telomerase RNA gene, sequence. | Procyon lotor (raccoon) | ||
28 | AF221936.1 | N/A | seed | 98 | 540 | Bos taurus telomerase RNA gene, sequence. | Bos taurus (cattle) | ||
29 | AF221920.1 | N/A | seed | 99 | 541 | Sus scrofa telomerase RNA gene, sequence. | Sus scrofa (pig) | ||
30 | AF221921.1 | N/A | seed | 98 | 548 | Suncus murinus telomerase RNA gene, sequence. | Suncus murinus (house shrew) | ||
31 | AF221925.1 | N/A | seed | 98 | 540 | Equus caballus telomerase RNA gene, sequence. | Equus caballus (horse) | ||
32 | AF221906.1 | N/A | seed | 96 | 545 | Dasypus novemcinctus telomerase RNA gene, sequence. | Dasypus novemcinctus (nine-banded armadillo) | ||
33 | AF221911.1 | N/A | seed | 104 | 513 | Chelydra serpentina telomerase RNA gene, sequence. | Chelydra serpentina (snapping turtle) | ||
34 | AF221924.1 | N/A | seed | 105 | 538 | Anodorhynchus hyacinthinus telomerase RNA gene, sequence. | Anodorhynchus hyacinthinus | ||
35 | AY312571.1 | N/A | seed | 605 | 1,069 | Gallus gallus gallus telomerase RNA gene, complete sequence. | Gallus gallus gallus | ||
36 | AF147806.2 | N/A | seed | 247 | 692 | Gallid herpesvirus 2, complete genome. | Gallid herpesvirus 2 (Marek's disease virus type 1) | ||
0 | FNWR01000088.1 | 367.00 | full | 4,044,105 | 4,044,534 | FNWR01000088.1 Neovison vison genome assembly, contig: scaffold88, whole genome shotgun sequence | Neovison vison | ||
1 | NW_019154086.1 | 366.20 | full | 20,749,348 | 20,749,777 | NW_019154086.1 Enhydra lutris kenyoni isolate GAN:26980312 unplaced genomic scaffold, ASM228890v2 scaffoldscaffold2, whole genome shotgun sequence | Enhydra lutris kenyoni | ||
2 | KQ018509.1 | 365.90 | full | 3,370,281 | 3,369,845 | KQ018509.1 Propithecus coquereli isolate 6110/MARCELLA unplaced genomic scaffold Scaffold15, whole genome shotgun sequence | Propithecus coquereli (Coquerel's sifaka) | ||
3 | CYRY02012220.1 | 364.20 | full | 560,899 | 560,470 | CYRY02012220.1 Gulo gulo genome assembly, contig: scaffold210, whole genome shotgun sequence | Gulo gulo (wolverine) | ||
4 | NW_025421987.1 | 363.60 | full | 72,329,400 | 72,328,971 | NW_025421987.1 Mustela putorius furo isolate JIRA1106 unplaced genomic scaffold, ASM1176430v1.1 tig00003834_pilon_pilon_pilon, whole genome shotgun sequence | Mustela putorius furo (domestic ferret) | ||
5 | CM021931.1 | 361.70 | full | 10,296,422 | 10,296,859 | CM021931.1 Callithrix jacchus isolate mCalJac1 chromosome 17, whole genome shotgun sequence | Callithrix jacchus (white-tufted-ear marmoset) | ||
6 | KN294147.1 | 359.90 | full | 1,900,000 | 1,900,438 | KN294147.1 Rhinopithecus roxellana isolate Xiao Hai unplaced genomic scaffold ENSRROG000049, whole genome shotgun sequence | Rhinopithecus roxellana (golden snub-nosed monkey) | ||
7 | FR853096.2 | 359.50 | full | 172,553,372 | 172,552,935 | Gorilla gorilla gorilla genomic chromosome, chr3, whole genome shotgun sequence | Gorilla gorilla gorilla (western lowland gorilla) | ||
8 | NW_020312785.1 | 359.20 | full | 85,842,486 | 85,842,915 | NW_020312785.1 Callorhinus ursinus isolate GAN/ISIS: 27379988/994484 unplaced genomic scaffold, ASM326570v1 scaffold29, whole genome shotgun sequence | Callorhinus ursinus (northern fur seal) | ||
9 | CM018469.1 | 359.20 | full | 61,684,299 | 61,683,868 | CM018469.1 Panthera leo isolate Brooke chromosome D1, whole genome shotgun sequence | Panthera leo (lion) | ||
10 | KV389713.1 | 359.10 | full | 1,138,671 | 1,139,108 | KV389713.1 Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold287, whole genome shotgun sequence | Cebus imitator (Panamanian white-faced capuchin) | ||
11 | NW_022436944.1 | 359.10 | full | 1,123,478 | 1,123,915 | NW_022436944.1 Sapajus apella isolate SASKATOON/1434 unplaced genomic scaffold, GSC_monkey_1.0 scaffold4, whole genome shotgun sequence | Cebus apella (Tufted capuchin) | ||
12 | CAAGRJ010010522.1 | 358.90 | full | 3,108,567 | 3,108,999 | CAAGRJ010010522.1 Lynx pardinus genome assembly, contig: lp23s00008, whole genome shotgun sequence | Lynx pardinus (Spanish lynx) | ||
13 | CM017337.2 | 358.90 | full | 62,838,654 | 62,838,222 | CM017337.2 Lynx canadensis isolate LIC74 chromosome C2, whole genome shotgun sequence | Lynx canadensis (Canada lynx) | ||
14 | NW_020834740.1 | 358.90 | full | 35,982,176 | 35,982,608 | NW_020834740.1 Acinonyx jubatus isolate Rico unplaced genomic scaffold, Aci_jub_2 Primary Assembly Aci_jub_2_ph1_scaffold14, whole genome shotgun sequence | Acinonyx jubatus (cheetah) | ||
15 | JH378117.1 | 358.40 | full | 8,978,923 | 8,979,360 | JH378117.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00013, whole genome shotgun sequence | Saimiri boliviensis boliviensis (Bolivian squirrel monkey) | ||
16 | MCGX01010816.1 | 357.70 | full | 44,741 | 44,303 | MCGX01010816.1 Rhinopithecus bieti isolate Rb0 scaffold_32014, whole genome shotgun sequence | Rhinopithecus bieti (Black snub-nosed monkey) | ||
17 | CM001386.3 | 357.60 | full | 98,452,558 | 98,452,990 | Felis catus isolate Cinnamon breed Abyssinian chromosome C2, whole genome shotgun sequence. | Felis catus (domestic cat) | ||
18 | CM000317.3 | 357.50 | full | 173,452,317 | 173,451,880 | Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 3, whole genome shotgun sequence. | Pan troglodytes (chimpanzee) | ||
19 | CM003386.1 | 357.50 | full | 174,832,247 | 174,831,810 | CM003386.1 Pan paniscus isolate Ulindi chromosome 3, whole genome shotgun sequence | Pan paniscus (pygmy chimpanzee) | ||
20 | CM001657.1 | 357.40 | full | 94,220,640 | 94,220,203 | Nomascus leucogenys chromosome 11, whole genome shotgun sequence. | Nomascus leucogenys (Northern white-cheeked gibbon) | ||
21 | CM022819.1 | 357.00 | full | 92,346,148 | 92,346,577 | CM022819.1 Ailuropoda melanoleuca isolate Jingjing chromosome 1, whole genome shotgun sequence | Ailuropoda melanoleuca (giant panda) | ||
22 | NW_004450278.1 | 356.40 | full | 4,408,599 | 4,408,170 | NW_004450278.1 Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold, Oros_1.0 Scaffold15, whole genome shotgun sequence | Odobenus rosmarus divergens (Pacific walrus) | ||
23 | CM019241.1 | 356.00 | full | 117,438,560 | 117,438,998 | CM019241.1 Piliocolobus tephrosceles isolate RC106 chromosome 2, whole genome shotgun sequence | Piliocolobus tephrosceles (Ugandan red Colobus) | ||
24 | CM009265.2 | 355.80 | full | 167,351,635 | 167,351,198 | CM009265.2 Pongo abelii isolate Susie chromosome 3, whole genome shotgun sequence | Pongo abelii (Sumatran orangutan) | ||
25 | KZ197721.1 | 355.60 | full | 427,650 | 428,087 | KZ197721.1 Aotus nancymaae isolate 86115 unplaced genomic scaffold Scaffold131.17, whole genome shotgun sequence | Aotus nancymaae (Ma's night monkey) | ||
26 | LZNR01009877.1 | 355.40 | full | 98,276 | 98,705 | LZNR01009877.1 Ursus americanus isolate MABB319796 Contig9883, whole genome shotgun sequence | Ursus americanus (American black bear) | ||
27 | CM016975.1 | 355.30 | full | 94,926,360 | 94,926,791 | CM016975.1 Suricata suricatta isolate VVHF042 chromosome 5, whole genome shotgun sequence | Suricata suricatta (meerkat) | ||
28 | NW_024426552.1 | 355.10 | full | 91,861,822 | 91,862,251 | NW_024426552.1 Ursus maritimus isolate PB19 unplaced genomic scaffold, ASM1731132v1 scaffold_4, whole genome shotgun sequence | Ursus maritimus (polar bear) | ||
29 | CM001956.2 | 354.70 | full | 19,631,350 | 19,631,788 | Chlorocebus sabaeus isolate 1994-021 chromosome 15, whole genome shotgun sequence. | Chlorocebus sabaeus | ||
30 | MPIZ01000532.1 | 354.70 | full | 2,840,867 | 2,841,301 | MPIZ01000532.1 Prolemur simus strain KIAN8.4 scaffold532, whole genome shotgun sequence | Prolemur simus (greater bamboo lemur) | ||
31 | KN981479.1 | 354.50 | full | 1,850,835 | 1,851,273 | KN981479.1 Colobus angolensis palliatus isolate OR3802 unplaced genomic scaffold Scaffold289, whole genome shotgun sequence | Colobus angolensis palliatus | ||
32 | NC_058403.1 | 354.10 | full | 93,417,257 | 93,417,686 | NC_058403.1 Neomonachus schauinslandi chromosome 1, ASM220157v2, whole genome shotgun sequence | Monachus schauinslandi (Hawaiian monk seal) | ||
33 | NW_006384804.1 | 354.10 | full | 436,184 | 435,755 | NW_006384804.1 Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold, LepWed1.0 scaffold01764, whole genome shotgun sequence | Leptonychotes weddellii (Weddell seal) | ||
34 | CM000665.2 | 353.60 | full | 169,765,047 | 169,764,610 | Homo sapiens chromosome 3, GRCh38 reference primary assembly. | Homo sapiens (human) | ||
35 | CM009951.1 | 353.40 | full | 121,128,359 | 121,128,797 | CM009951.1 Theropithecus gelada isolate Dixy chromosome 2, whole genome shotgun sequence | Theropithecus gelada (gelada baboon) | ||
36 | CM014337.1 | 353.40 | full | 74,697,287 | 74,696,849 | CM014337.1 Macaca mulatta isolate AG07107 chromosome 2, whole genome shotgun sequence | Macaca mulatta (Rhesus monkey) | ||
37 | CM018181.1 | 353.40 | full | 121,267,401 | 121,267,839 | CM018181.1 Papio anubis isolate 15944 chromosome 2, whole genome shotgun sequence | Papio anubis (Olive baboon) | ||
38 | KQ004675.1 | 353.40 | full | 3,765,150 | 3,765,588 | KQ004675.1 Macaca nemestrina isolate M95218 unplaced genomic scaffold Scaffold106, whole genome shotgun sequence | Macaca nemestrina (pig-tailed macaque) | ||
39 | KQ012896.1 | 353.40 | full | 6,817,469 | 6,817,031 | KQ012896.1 Cercocebus atys isolate FAK unplaced genomic scaffold Scaffold91, whole genome shotgun sequence | Cercocebus atys (sooty mangabey) | ||
40 | CABDUW010003927.1 | 351.80 | full | 49,812 | 50,248 | CABDUW010003927.1 Marmota monax genome assembly, contig: monax5_s03927, whole genome shotgun sequence | Marmota monax (woodchuck) | ||
41 | CM000803.1 | 351.20 | full | 64,663,658 | 64,663,221 | Oryctolagus cuniculus chromosome 14, whole genome shotgun sequence. | Oryctolagus cuniculus (rabbit) | ||
42 | CM021940.1 | 351.10 | full | 73,068,828 | 73,068,391 | CM021940.1 Macaca fascicularis isolate cy0333 breed Mauritian cynomolgus macaque chromosome 2, whole genome shotgun sequence | Macaca fascicularis (crab-eating macaque) | ||
43 | PVHT021183693.1 | 350.80 | full | 26,124,222 | 26,123,793 | PVHT021183693.1 Catagonus wagneri isolate BS18 Sc2sB16_1185047;HRSCAF=1231754_2, whole genome shotgun sequence | Catagonus wagneri (Chacoan peccary) | ||
44 | CM007661.1 | 350.00 | full | 63,530,108 | 63,529,676 | CM007661.1 Microcebus murinus isolate mixed chromosome 1, whole genome shotgun sequence | Microcebus murinus (gray mouse lemur) | ||
45 | LR738620.1 | 347.70 | full | 103,111,500 | 103,111,935 | LR738620.1 Sciurus vulgaris genome assembly, chromosome: 10 | Sciurus vulgaris (Eurasian red squirrel) | ||
46 | JACASF010000005.1 | 345.20 | full | 36,542,521 | 36,542,091 | JACASF010000005.1 Molossus molossus isolate mMolMol1 scaffold_m16_p_5, whole genome shotgun sequence | Molossus molossus (Pallas's mastiff bat) | ||
47 | NW_004444046.1 | 343.80 | full | 4,389,698 | 4,389,263 | NW_004444046.1 Trichechus manatus latirostris isolate Lorelei unplaced genomic scaffold, TriManLat1.0 scaffold00110, whole genome shotgun sequence | Trichechus manatus latirostris | ||
48 | KB030623.1 | 343.60 | full | 2,719,854 | 2,719,426 | KB030623.1 Pteropus alecto unplaced genomic scaffold scaffold33, whole genome shotgun sequence | Pteropus alecto (black flying fox) | ||
49 | JACASE010000004.1 | 343.00 | full | 30,196,362 | 30,195,933 | JACASE010000004.1 Rousettus aegyptiacus isolate mRouAeg1 scaffold_m13_p_4, whole genome shotgun sequence | Rousettus aegyptiacus (Egyptian rousette) | ||
50 | JH393403.1 | 342.40 | full | 2,655,555 | 2,655,991 | JH393403.1 Spermophilus tridecemlineatus unplaced genomic scaffold scaffold00125, whole genome shotgun sequence | Spermophilus tridecemlineatus (thirteen-lined ground squirrel) | ||
51 | QVIC01000148.1 | 342.30 | full | 2,757,605 | 2,758,041 | QVIC01000148.1 Urocitellus parryii isolate AGS 11-09-20 scaffold_147, whole genome shotgun sequence | Spermophilus parryii (Arctic ground squirrel) | ||
52 | JAATJV010143100.1 | 342.10 | full | 869,242 | 869,677 | JAATJV010143100.1 Sciurus carolinensis isolate SUZIE scaffold1099, whole genome shotgun sequence | Sciurus carolinensis (gray squirrel) | ||
53 | CM008026.1 | 342.00 | full | 7,802,225 | 7,801,796 | CM008026.1 Cervus elaphus hippelaphus isolate Hungarian chromosome 19, whole genome shotgun sequence | Cervus elaphus hippelaphus | ||
54 | NW_011888793.1 | 341.80 | full | 12,251,259 | 12,250,831 | NW_011888793.1 Pteropus vampyrus isolate Shadow unplaced genomic scaffold, Pvam_2.0 Scaffold12, whole genome shotgun sequence | Pteropus vampyrus (large flying fox) | ||
55 | CM021210.1 | 340.00 | full | 72,299,642 | 72,300,070 | CM021210.1 Cervus hanglu yarkandensis isolate CEY-2017 chromosome 19, whole genome shotgun sequence | Cervus elaphus yarkandensis | ||
56 | JACDTQ010001514.1 | 339.90 | full | 7,908,108 | 7,907,680 | JACDTQ010001514.1 Diceros bicornis minor isolate SBR-YM ScS9zPn_1514, whole genome shotgun sequence | Diceros bicornis minor | ||
57 | CM016627.2 | 339.20 | full | 40,496,048 | 40,495,622 | CM016627.2 Camelus dromedarius isolate Drom800 breed African chromosome 1, whole genome shotgun sequence | Camelus dromedarius (Arabian camel) | ||
58 | CM000824.5 | 339.10 | full | 108,426,495 | 108,426,066 | Sus scrofa isolate TJ Tabasco breed Duroc chromosome 13, whole genome shotgun sequence. | Sus scrofa (pig) | ||
59 | CM018485.1 | 339.10 | full | 71,392,774 | 71,393,203 | CM018485.1 Muntiacus reevesi isolate UCam_UCB_Mr chromosome 7, whole genome shotgun sequence | Muntiacus reevesi (Chinese muntjac) | ||
60 | NW_018342109.1 | 338.70 | full | 396,161 | 396,590 | NW_018342109.1 Odocoileus virginianus texanus isolate animal Pink-7 unplaced genomic scaffold, Ovir.te_1.0 scaffold834, whole genome shotgun sequence | Odocoileus virginianus texanus | ||
61 | KE721690.1 | 338.20 | full | 3,937,432 | 3,937,001 | KE721690.1 Panthera tigris altaica isolate TaeGuk unplaced genomic scaffold scaffold147, whole genome shotgun sequence | Panthera tigris altaica (Amur tiger) | ||
62 | NC_041214.2 | 337.90 | full | 63,202,777 | 63,202,350 | NC_041214.2 Physeter catodon isolate SW-GA chromosome 1, ASM283717v5, whole genome shotgun sequence | Physeter catodon (sperm whale) | ||
63 | CM009166.1 | 336.30 | full | 12,585,200 | 12,584,771 | CM009166.1 Equus caballus isolate Twilight breed thoroughbred chromosome 19, whole genome shotgun sequence | Equus caballus (horse) | ||
64 | CM016690.1 | 336.10 | full | 106,138,053 | 106,138,482 | CM016690.1 Bos grunniens isolate yakHY00 ecotype maiwa chromosome 1, whole genome shotgun sequence | Bos grunniens (domestic yak) | ||
65 | JH883129.1 | 336.10 | full | 276,272 | 276,701 | JH883129.1 Bos grunniens mutus unplaced genomic scaffold scaffold2474_1, whole genome shotgun sequence | Bos grunniens mutus | ||
66 | NW_011494612.1 | 336.10 | full | 3,775,340 | 3,774,911 | NW_011494612.1 Bison bison bison isolate TAMUID 2011002044 unplaced genomic scaffold, Bison_UMD1.0 scf7180017864040, whole genome shotgun sequence | Bison bison bison (north american plains bison) | ||
67 | NC_045788.1 | 335.80 | full | 47,938,571 | 47,938,144 | NC_045788.1 Balaenoptera musculus isolate JJ_BM4_2016_0621 chromosome 4, mBalMus1.pri.v3, whole genome shotgun sequence | Balaenoptera musculus (Blue whale) | ||
68 | CM008168.2 | 335.70 | full | 97,612,804 | 97,613,233 | CM008168.2 Bos taurus isolate L1 Dominette 01449 registration number 42190680 breed Hereford chromosome 1, whole genome shotgun sequence | Bos taurus (cattle) | ||
69 | CM011774.1 | 335.70 | full | 59,765,785 | 59,765,356 | CM011774.1 Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid chromosome 1, whole genome shotgun sequence | Bos indicus x Bos taurus (hybrid cattle) | ||
70 | CM011791.1 | 335.70 | full | 31,738,700 | 31,738,271 | CM011791.1 Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid chromosome 18, whole genome shotgun sequence | Bos indicus x Bos taurus (hybrid cattle) | ||
71 | NC_032650.1 | 335.70 | full | 100,018,848 | 100,019,277 | NC_032650.1 Bos indicus isolate QUIL7308 breed Nelore chromosome 1, Bos_indicus_1.0, whole genome shotgun sequence | Bos indicus | ||
72 | CM027694.2 | 335.60 | full | 62,304,875 | 62,304,446 | CM027694.2 Equus asinus breed Dezhou chromosome 5, whole genome shotgun sequence | Equus asinus (ass) | ||
73 | CM004562.1 | 335.20 | full | 97,138,833 | 97,139,262 | CM004562.1 Capra hircus breed San Clemente chromosome 1, whole genome shotgun sequence | Capra hircus (goat) | ||
74 | NW_006770909.1 | 334.90 | full | 5,352,331 | 5,351,905 | NW_006770909.1 Lipotes vexillifer unplaced genomic scaffold, Lipotes_vexillifer_v1 scaffold763, whole genome shotgun sequence | Lipotes vexillifer (Yangtze River dolphin) | ||
75 | NW_022098104.1 | 333.80 | full | 108,158,611 | 108,159,037 | NW_022098104.1 Delphinapterus leucas isolate GAN/ISIS: 26980492/103006 unplaced genomic scaffold, ASM228892v3 scaffoldscaffold113, whole genome shotgun sequence | Delphinapterus leucas (beluga whale) | ||
76 | RWIC01000721.1 | 333.80 | full | 816,372 | 815,946 | RWIC01000721.1 Monodon monoceros isolate MVW Scaffold720, whole genome shotgun sequence | Monodon monoceros (narwhal) | ||
77 | NW_020185321.1 | 333.70 | full | 7,971,970 | 7,971,543 | NW_020185321.1 Neophocaena asiaeorientalis asiaeorientalis breed wild unplaced genomic scaffold, Neophocaena_asiaeorientalis_V1 scaffold280, whole genome shotgun sequence | Neophocaena asiaeorientalis asiaeorientalis (yangtze finless porpoise) | ||
78 | NW_021964154.1 | 333.20 | full | 40,791,317 | 40,790,891 | NW_021964154.1 Vicugna pacos isolate Carlotta (AHFN-0088) chromosome 1 unlocalized genomic scaffold, VicPac3.1 ScfyRBE_77225;HRSCAF=78975, whole genome shotgun sequence | Vicugna pacos (alpaca) | ||
79 | CM001582.2 | 332.60 | full | 215,489,218 | 215,489,647 | Ovis aries breed Texel chromosome 1, whole genome shotgun sequence. | Ovis aries (sheep) | ||
80 | NC_047037.1 | 331.90 | full | 47,526,986 | 47,526,560 | NC_047037.1 Tursiops truncatus isolate mTurTru1 chromosome 4, mTurTru1.mat.Y, whole genome shotgun sequence | Tursiops truncatus (bottlenosed dolphin) | ||
81 | QWLN02020823.1 | 331.90 | full | 1,500,775 | 1,500,349 | QWLN02020823.1 Sousa chinensis isolate MY-2018 scaffold121.1, whole genome shotgun sequence | Sousa chinensis (Indo-pacific humpbacked dolphin) | ||
82 | CM018159.1 | 331.50 | full | 47,812,591 | 47,812,164 | CM018159.1 Phocoena sinus isolate mPhoSin1 chromosome 4, whole genome shotgun sequence | Phocoena sinus (vaquita) | ||
83 | GL010069.1 | 331.40 | full | 10,605,997 | 10,606,432 | Loxodonta africana unplaced genomic scaffold scaffold_42, whole genome shotgun sequence. | Loxodonta africana (African savanna elephant) | ||
84 | NW_006921755.1 | 328.00 | full | 3,591,775 | 3,592,208 | NW_006921755.1 Orycteropus afer afer isolate SDZICR_OR568_19922 unplaced genomic scaffold, OryAfe1.0 scaffold00168, whole genome shotgun sequence | Orycteropus afer afer | ||
85 | NC_032667.1 | 327.50 | full | 32,935,402 | 32,935,831 | NC_032667.1 Bos indicus isolate QUIL7308 breed Nelore chromosome 18, Bos_indicus_1.0, whole genome shotgun sequence | Bos indicus | ||
86 | JAGFMF010011830.1 | 326.90 | full | 6,603,500 | 6,603,926 | JAGFMF010011830.1 Galemys pyrenaicus isolate IBE-C5619 2611510, whole genome shotgun sequence | Galemys pyrenaicus | ||
87 | CM014227.1 | 326.60 | full | 72,399,080 | 72,399,512 | CM014227.1 Rhinolophus ferrumequinum isolate MPI-CBG mRhiFer1 chromosome 2, whole genome shotgun sequence | Rhinolophus ferrumequinum (greater horseshoe bat) | ||
88 | NW_017731433.1 | 325.40 | full | 2,838,944 | 2,838,516 | NW_017731433.1 Hipposideros armiger isolate ML-2016 unplaced genomic scaffold, ASM189008v1, whole genome shotgun sequence | Hipposideros armiger | ||
89 | SGJD01000914.1 | 325.20 | full | 2,558,540 | 2,558,092 | SGJD01000914.1 Balaenoptera physalus isolate FinWhale-01 scaffold1098, whole genome shotgun sequence | Balaenoptera physalus (Fin whale) | ||
90 | NC_040904.2 | 323.40 | full | 32,816,036 | 32,815,603 | NC_040904.2 Phyllostomus discolor isolate MPI-MPIP mPhyDis1 chromosome 2, mPhyDis1.pri.v3, whole genome shotgun sequence | Phyllostomus discolor (pale spear-nosed bat) | ||
91 | KB320711.1 | 318.40 | full | 193,714 | 194,170 | KB320711.1 Tupaia chinensis unplaced genomic scaffold Scaffold000281_1, whole genome shotgun sequence | Tupaia chinensis (Chinese tree shrew) | ||
92 | JAULJE010000004.1 | 312.40 | full | 79,240,919 | 79,241,357 | JAULJE010000004.1 Eptesicus nilssonii isolate BLF_Eptnil Scaffold_4, whole genome shotgun sequence | Eptesicus nilssoni (northern bat) | ||
93 | GL429820.1 | 309.80 | full | 2,656,593 | 2,657,017 | Myotis lucifugus unplaced genomic scaffold scaffold_53, whole genome shotgun sequence. | Myotis lucifugus (little brown bat) | ||
94 | NW_006408561.1 | 306.70 | full | 17,332,618 | 17,332,184 | NW_006408561.1 Chrysochloris asiatica unplaced genomic scaffold, ChrAsi1.0 scaffold00043, whole genome shotgun sequence | Chrysochloris asiatica | ||
95 | DS562955.1 | 303.60 | full | 2,291,304 | 2,290,878 | Cavia porcellus supercont2_100 genomic scaffold, whole genome shotgun sequence. | Cavia porcellus (Domestic guinea pig) | ||
96 | JABWUV010000002.1 | 302.70 | full | 186,553,236 | 186,553,660 | JABWUV010000002.1 Myotis myotis isolate mMyoMyo1 scaffold_m19_p_2, whole genome shotgun sequence | Myotis myotis | ||
97 | NW_017872830.1 | 302.30 | full | 11,433 | 11,006 | NW_017872830.1 Castor canadensis isolate Ward unplaced genomic scaffold, C.can genome v1.0 scaffold_3503, whole genome shotgun sequence | Castor canadensis (American beaver) | ||
98 | CAJHUB010000771.1 | 299.80 | full | 65,474,717 | 65,474,282 | CAJHUB010000771.1 Nyctereutes procyonoides isolate TBG_1078 genome assembly, contig: Nypro793, whole genome shotgun sequence | Nyctereutes procyonoides (raccoon dog) | ||
99 | JH721880.1 | 299.60 | full | 18,265 | 17,832 | JH721880.1 Chinchilla lanigera unplaced genomic scaffold scaffold00019, whole genome shotgun sequence | Chinchilla lanigera | ||
100 | GL873603.1 | 299.30 | full | 7,335,131 | 7,334,703 | Otolemur garnettii unplaced genomic scaffold scaffold00084, whole genome shotgun sequence. | Otolemur garnettii (small-eared galago) | ||
101 | JACAGB010000002.1 | 298.90 | full | 25,796,663 | 25,796,209 | JACAGB010000002.1 Pipistrellus kuhlii isolate mPipKuh1 scaffold_m20_p_2, whole genome shotgun sequence | Pipistrellus kuhlii (Kuhl's pipistrelle) | ||
102 | CM025133.1 | 297.50 | full | 34,447,504 | 34,447,069 | CM025133.1 Canis lupus familiaris isolate SID07034 breed Labrador retriever chromosome 34, whole genome shotgun sequence | Canis lupus familiaris (dog) | ||
103 | CM025490.1 | 297.50 | full | 34,461,715 | 34,461,280 | CM025490.1 Canis lupus dingo isolate Sandy chromosome 34, whole genome shotgun sequence | Canis lupus dingo (dingo) | ||
104 | JWIN03000053.1 | 296.80 | full | 194,285 | 194,706 | JWIN03000053.1 Camelus dromedarius breed African isolate Drom800 Contig47, whole genome shotgun sequence | Camelus dromedarius (Arabian camel) | ||
105 | NW_011512859.1 | 294.80 | full | 18,031,897 | 18,031,476 | NW_011512859.1 Camelus bactrianus breed Alxa unplaced genomic scaffold, Ca_bactrianus_MBC_1.0 scaffold73, whole genome shotgun sequence | Camelus bactrianus (Bactrian camel) | ||
106 | NW_012267246.1 | 287.50 | full | 9,967,032 | 9,966,597 | NW_012267246.1 Dipodomys ordii isolate 6190 unplaced genomic scaffold, Dord_2.0 Scaffold30, whole genome shotgun sequence | Dipodomys ordii (Ord's kangaroo rat) | ||
107 | NW_004524631.1 | 285.20 | full | 6,777,201 | 6,777,639 | NW_004524631.1 Octodon degus isolate 3935 unplaced genomic scaffold, OctDeg1.0 scaffold00055, whole genome shotgun sequence | Octodon degus (degu) | ||
108 | NW_020356501.1 | 275.10 | full | 4,657,201 | 4,656,767 | NW_020356501.1 Vulpes vulpes strain TameXAggressive cross unplaced genomic scaffold, VulVul2.2 scaffold67, whole genome shotgun sequence | Vulpes vulpes (red fox) | ||
109 | KL200152.1 | 274.10 | full | 2,088,516 | 2,088,940 | KL200152.1 Nannospalax galili isolate Female #2095 unplaced genomic scaffold scaffold33, whole genome shotgun sequence | Nannospalax galili (Upper Galilee mountains blind mole rat) | ||
110 | NTJE010195129.1 | 268.00 | full | 5,102 | 4,737 | NTJE010195129.1 Eschrichtius robustus isolate AM-GW-M-EMB-4M-20130531 contig_216009, whole genome shotgun sequence | Eschrichtius robustus (grey whale) | ||
111 | PVHU020000827.1 | 265.30 | full | 22,585,391 | 22,585,783 | PVHU020000827.1 Moschus moschiferus isolate BS20 Scw3uUT_765;HRSCAF=73309_4, whole genome shotgun sequence | Moschus moschiferus (Siberian musk deer) | ||
112 | NW_006804113.1 | 259.30 | full | 1,228,609 | 1,229,031 | NW_006804113.1 Erinaceus europaeus isolate Erinaceus europaeus_13Jul2011 unplaced genomic scaffold, EriEur2.0 scaffold00190, whole genome shotgun sequence | Erinaceus europaeus (western European hedgehog) | ||
113 | CM026975.1 | 255.50 | full | 112,815,622 | 112,816,041 | CM026975.1 Rattus norvegicus strain BN/NHsdMcwi chromosome 2, whole genome shotgun sequence | Rattus norvegicus (Norway rat) | ||
114 | NC_047092.1 | 252.10 | full | 162,975,972 | 162,976,426 | NC_047092.1 Geotrypetes seraphini chromosome 9, aGeoSer1.1, whole genome shotgun sequence | Geotrypetes seraphini | ||
115 | NW_004801623.1 | 243.60 | full | 17,974,559 | 17,974,162 | NW_004801623.1 Mesocricetus auratus isolate Golden Hamster female 1 unplaced genomic scaffold, MesAur1.0 scaffold00020, whole genome shotgun sequence | Mesocricetus auratus (golden hamster) | ||
116 | JH000397.1 | 243.40 | full | 731,342 | 731,734 | JH000397.1 Cricetulus griseus cell line CHO-K1 unplaced genomic scaffold scaffold2001, whole genome shotgun sequence | Cricetulus griseus (Chinese hamster) | ||
117 | QGOO02000018.1 | 243.30 | full | 4,963,413 | 4,962,991 | QGOO02000018.1 Mus spicilegus strain ZRU musp714_scaffold_00018b, whole genome shotgun sequence | Mus spicilegus (steppe mouse) | ||
118 | VOAJ01003100.1 | 242.10 | full | 639,177 | 638,795 | VOAJ01003100.1 Crocuta crocuta isolate KB4526 scaffold433, whole genome shotgun sequence | Crocuta crocuta (spotted hyena) | ||
119 | JAATJU010017933.1 | 238.30 | full | 63,997 | 64,411 | JAATJU010017933.1 Microtus ochrogaster isolate LTLLF scaffold174, whole genome shotgun sequence | Microtus ochrogaster (prairie vole) | ||
120 | CM000996.3 | 237.40 | full | 96,322,176 | 96,321,753 | CM000996.3 Mus musculus chromosome 3, GRCm39 reference primary assembly C57BL/6J | Mus musculus (house mouse) | ||
121 | NC_044039.1 | 237.20 | full | 82,319,951 | 82,320,383 | NC_044039.1 Microcaecilia unicolor chromosome 9, aMicUni1.1, whole genome shotgun sequence | Microcaecilia unicolor | ||
122 | JH725443.1 | 236.10 | full | 33,476,817 | 33,477,253 | JH725443.1 Jaculus jaculus unplaced genomic scaffold scaffold00007, whole genome shotgun sequence | Jaculus jaculus (lesser Egyptian jerboa) | ||
123 | ML685768.1 | 221.20 | full | 26,983,443 | 26,983,039 | ML685768.1 Pelusios castaneus unplaced genomic scaffold Scaffold33, whole genome shotgun sequence | Pelusios castaneus | ||
124 | KV958908.1 | 217.90 | full | 18,703 | 18,302 | KV958908.1 Rana catesbeiana isolate Bruno unplaced genomic scaffold Rc-01r160223s0033129, whole genome shotgun sequence | Rana catesbeiana (bullfrog) | ||
125 | NW_006803952.1 | 209.70 | full | 4,775,810 | 4,776,208 | NW_006803952.1 Erinaceus europaeus isolate Erinaceus europaeus_13Jul2011 unplaced genomic scaffold, EriEur2.0 scaffold00029, whole genome shotgun sequence | Erinaceus europaeus (western European hedgehog) | ||
126 | NW_017731727.1 | 207.10 | full | 1,497,680 | 1,497,269 | NW_017731727.1 Hipposideros armiger isolate ML-2016 unplaced genomic scaffold, ASM189008v1, whole genome shotgun sequence | Hipposideros armiger | ||
127 | ML689098.1 | 205.90 | full | 35,018,487 | 35,018,082 | ML689098.1 Chelydra serpentina unplaced genomic scaffold Scaffold118, whole genome shotgun sequence | Chelydra serpentina (snapping turtle) | ||
128 | QXTE01000035.1 | 205.50 | full | 8,919,430 | 8,919,026 | QXTE01000035.1 Platysternon megacephalum isolate DO16091913 scaf35, whole genome shotgun sequence | Platysternon megacephalum (big-headed turtle) | ||
129 | PRFB02000089.1 | 202.40 | full | 34,985,939 | 34,985,535 | PRFB02000089.1 Terrapene triunguis isolate 2854851 Scaffold88, whole genome shotgun sequence | Terrapene carolina triunguis (three-toed box turtle) | ||
130 | CM035641.1 | 201.80 | full | 88,833,218 | 88,832,813 | CM035641.1 Mauremys mutica isolate MM-2020 ecotype Southern chromosome 9, whole genome shotgun sequence | Mauremys mutica | ||
131 | CM024786.1 | 201.50 | full | 83,749,889 | 83,749,484 | CM024786.1 Chrysemys picta bellii isolate RCT428 chromosome 9, whole genome shotgun sequence | Chrysemys picta bellii (western painted turtle) | ||
132 | KB030280.1 | 197.60 | full | 1,283,844 | 1,284,243 | KB030280.1 Pteropus alecto unplaced genomic scaffold scaffold280, whole genome shotgun sequence | Pteropus alecto (black flying fox) | ||
133 | NW_011889171.1 | 195.30 | full | 1,502,129 | 1,501,730 | NW_011889171.1 Pteropus vampyrus isolate Shadow unplaced genomic scaffold, Pvam_2.0 Scaffold390, whole genome shotgun sequence | Pteropus vampyrus (large flying fox) | ||
134 | PKMU01001678.1 | 193.50 | full | 2,217,795 | 2,218,198 | PKMU01001678.1 Chelonoidis abingdonii isolate Lonesome George Contig194, whole genome shotgun sequence | Geochelone nigra abingdoni | ||
135 | VYZH01000049.1 | 191.70 | full | 404,511 | 404,067 | VYZH01000049.1 Probosciger aterrimus voucher USNM:615002 isolate B10K-DU-017-47 scaffold_44, whole genome shotgun sequence | Probosciger aterrimus | ||
136 | CM017304.1 | 190.70 | full | 17,375,951 | 17,376,356 | CM017304.1 Gopherus evgoodei ecotype Sinaloan lineage chromosome 9, whole genome shotgun sequence | Gopherus evgoodei (goodes thornscrub tortoise) | ||
137 | WBNI01000791.1 | 188.70 | full | 160,785 | 160,336 | WBNI01000791.1 Eolophus roseicapilla voucher USNM:632230 isolate B10K-DU-025-06 scaffold_744, whole genome shotgun sequence | Eolophus roseicapillus (Galah) | ||
138 | NC_054388.1 | 187.80 | full | 69,664,158 | 69,664,590 | NC_054388.1 Xenopus laevis strain J_2021 chromosome 9_10S, Xenopus_laevis_v10.1, whole genome shotgun sequence | Xenopus laevis (African clawed frog) | ||
139 | PPEB01001631.1 | 187.10 | full | 90,815 | 90,411 | PPEB01001631.1 Gopherus agassizii scaffold_1630, whole genome shotgun sequence | Gopherus agassizii (desert tortoise) | ||
140 | VWZX01007345.1 | 184.60 | full | 3,546,638 | 3,546,175 | VWZX01007345.1 Galbula dea voucher USNM:625763 isolate B10K-DU-001-62 scaffold472, whole genome shotgun sequence | Galbula dea | ||
141 | NC_054387.1 | 183.10 | full | 79,363,991 | 79,364,429 | NC_054387.1 Xenopus laevis strain J_2021 chromosome 9_10L, Xenopus_laevis_v10.1, whole genome shotgun sequence | Xenopus laevis (African clawed frog) | ||
142 | CM033473.1 | 182.60 | full | 208,935,693 | 208,936,105 | CM033473.1 Hymenochirus boettgeri isolate Female2 chromosome 5, whole genome shotgun sequence | Hymenochirus boettgeri | ||
143 | VXAQ01000200.1 | 179.80 | full | 71,113 | 71,582 | VXAQ01000200.1 Chordeiles acutipennis voucher USNM:632837 isolate B10K-DU-008-62 scaffold_154_2, whole genome shotgun sequence | Chordeiles acutipennis (lesser nighthawk) | ||
144 | JACASE010000009.1 | 179.00 | full | 72,732,869 | 72,732,466 | JACASE010000009.1 Rousettus aegyptiacus isolate mRouAeg1 scaffold_m13_p_9, whole genome shotgun sequence | Rousettus aegyptiacus (Egyptian rousette) | ||
145 | MPIZ01117629.1 | 178.20 | full | 1,069 | 1,474 | MPIZ01117629.1 Prolemur simus strain KIAN8.4 C250283, whole genome shotgun sequence | Prolemur simus (greater bamboo lemur) | ||
146 | VXBP01000090.1 | 177.10 | full | 130,059 | 130,518 | VXBP01000090.1 Rhinopomastus cyanomelas voucher USNM:642342 isolate B10K-DU-002-35 scaffold2556, whole genome shotgun sequence | Rhinopomastus cyanomelas (common scimitar-bill) | ||
147 | CM013769.2 | 176.90 | full | 29,824,168 | 29,823,717 | CM013769.2 Strigops habroptila isolate Jane chromosome 8, whole genome shotgun sequence | Strigops habroptila (kakapo) | ||
148 | CM019066.1 | 176.70 | full | 122,365,096 | 122,365,515 | CM019066.1 Leptobrachium leishanense isolate GZLS1 chromosome 4, whole genome shotgun sequence | Leptobrachium leishanense (Leishan spiny toad) | ||
149 | VZUJ01071738.1 | 176.50 | full | 23,005 | 22,546 | VZUJ01071738.1 Atlantisia rogersi isolate OUT-0055 NODE_12120_length_26047_cov_11.7051_ID_24239, whole genome shotgun sequence | Atlantisia rogersi (inaccessible island rail) | ||
150 | NC_030685.2 | 176.10 | full | 64,076,474 | 64,076,038 | NC_030685.2 Xenopus tropicalis strain Nigerian chromosome 9, UCB_Xtro_10.0, whole genome shotgun sequence | Xenopus (Silurana) tropicalis (western clawed frog) | ||
151 | WAAF01005630.1 | 174.50 | full | 237,928 | 237,464 | WAAF01005630.1 Tricholaema leucomelas voucher USNM:642560 isolate B10K-DU-002-37 scaffold348, whole genome shotgun sequence | Tricholaema leucomelas (pied barbet) | ||
152 | VWZE01018317.1 | 172.10 | full | 561,279 | 560,798 | VWZE01018317.1 Eubucco bourcierii voucher USNM:542831 isolate B10K-DU-001-04 scaffold1523, whole genome shotgun sequence | Eubucco bourcierii (red-headed barbet) | ||
153 | VYZU01057603.1 | 171.50 | full | 531 | 1,012 | VYZU01057603.1 Ceyx cyanopectus voucher USNM:607346 isolate B10K-DU-013-51 scaffold8606, whole genome shotgun sequence | Alcedo cyanopecta | ||
154 | VXBD01007624.1 | 171.50 | full | 263,322 | 263,751 | VXBD01007624.1 Indicator maculatus voucher USNM:630811 isolate B10K-DU-001-78 scaffold275, whole genome shotgun sequence | Indicator maculatus | ||
155 | VZTQ01004941.1 | 171.20 | full | 318,907 | 318,449 | VZTQ01004941.1 Pelecanoides urinatrix voucher UWBM:60517 isolate B10K-DU-012-45 scaffold1286, whole genome shotgun sequence | Pelecanoides urinatrix | ||
156 | CM034086.1 | 169.40 | full | 255,472,873 | 255,473,267 | CM034086.1 Eleutherodactylus coqui isolate HN-11 Male chromosome 1, whole genome shotgun sequence | Eleutherodactylus coqui (Puerto Rican coqui) | ||
157 | WBNM01007933.1 | 168.70 | full | 13,063 | 12,590 | WBNM01007933.1 Ramphastos sulfuratus voucher USNM:607736 isolate B10K-DU-001-30 scaffold1543, whole genome shotgun sequence | Ramphastos sulfuratus | ||
158 | VZZU01000214.1 | 168.50 | full | 220,218 | 220,685 | VZZU01000214.1 Nyctiprogne leucopyga voucher USNM:572514 isolate B10K-DU-005-01 scaffold_208, whole genome shotgun sequence | Nyctiprogne leucopyga | ||
159 | CM034086.1 | 165.40 | full | 255,495,838 | 255,496,232 | CM034086.1 Eleutherodactylus coqui isolate HN-11 Male chromosome 1, whole genome shotgun sequence | Eleutherodactylus coqui (Puerto Rican coqui) | ||
160 | VWZL01004392.1 | 165.20 | full | 322,771 | 322,290 | VWZL01004392.1 Stercorarius parasiticus voucher USNM:606730 isolate B10K-DU-001-20 scaffold581, whole genome shotgun sequence | Stercorarius parasiticus | ||
161 | NW_023010877.1 | 164.20 | full | 9,904,954 | 9,905,395 | NW_023010877.1 Pantherophis guttatus isolate EG266 unplaced genomic scaffold, UNIGE_PanGut_3.0 Super-Scaffold_82497, whole genome shotgun sequence | Pantherophis guttatus | ||
162 | VWZD01004846.1 | 162.60 | full | 993,971 | 993,554 | VWZD01004846.1 Sakesphorus luctuosus voucher USNM:562277 isolate B10K-DU-001-06 scaffold154, whole genome shotgun sequence | Sakesphorus luctuosus | ||
163 | VZRF01010396.1 | 162.20 | full | 1,389,741 | 1,389,280 | VZRF01010396.1 Vireo altiloquus voucher USNM:607205 isolate B10K-DU-001-22 scaffold169, whole genome shotgun sequence | Vireo altiloquus (black-whiskered vireo) | ||
164 | PVHU020040205.1 | 161.70 | full | 597 | 838 | PVHU020040205.1 Moschus moschiferus isolate BS20 Scw3uUT_40107;HRSCAF=143627, whole genome shotgun sequence | Moschus moschiferus (Siberian musk deer) | ||
165 | CM012091.2 | 161.40 | full | 21,688,422 | 21,688,872 | CM012091.2 Taeniopygia guttata isolate Black17 chromosome 9, whole genome shotgun sequence | Taeniopygia guttata | ||
166 | BFAA01003180.1 | 161.00 | full | 22,807 | 22,252 | BFAA01003180.1 Scyliorhinus torazame DNA, scf_scyto00003180, whole genome shotgun sequence | Scyliorhinus torazame (cloudy catshark) | ||
167 | VZUG01033609.1 | 160.80 | full | 251,595 | 251,125 | VZUG01033609.1 Calonectris borealis voucher personal:Jacob:6119913 isolate OUT-0025 scaffold1660, whole genome shotgun sequence | Calonectris borealis (cory's shearwater) | ||
168 | NW_006501046.1 | 160.70 | full | 6,686,301 | 6,685,909 | NW_006501046.1 Peromyscus maniculatus bairdii unplaced genomic scaffold, Pman_1.0 Scaffold10, whole genome shotgun sequence | Peromyscus maniculatus bairdii (prairie deer mouse) | ||
169 | MUZQ01000058.1 | 160.50 | full | 2,395,074 | 2,395,511 | Lonchura striata domestica isolate white83orange57 scaffold_57, whole genome shotgun sequence. | Lonchura striata domestica (Bengalese finch) | ||
170 | PVHU020001267.1 | 160.40 | full | 3,300 | 3,541 | PVHU020001267.1 Moschus moschiferus isolate BS20 Scw3uUT_1201;HRSCAF=77929, whole genome shotgun sequence | Moschus moschiferus (Siberian musk deer) | ||
171 | VWPV01031006.1 | 160.20 | full | 3,224 | 3,667 | VWPV01031006.1 Geococcyx californianus voucher LSUMZ:Ornithology:B58226 isolate B10K-CU-031-07 scaffold19720, whole genome shotgun sequence | Geococcyx californianus | ||
172 | VWYK01068610.1 | 160.00 | full | 15,836 | 16,310 | VWYK01068610.1 Semnornis frantzii voucher USNM:613303 isolate B10K-DU-001-42 scaffold10212, whole genome shotgun sequence | Semnornis frantzii | ||
173 | KB017296.1 | 159.80 | full | 692,076 | 691,707 | Camelus ferus unplaced genomic scaffold scaffold1066, whole genome shotgun sequence. | Camelus ferus (Wild Bactrian camel) | ||
174 | VZRI01009526.1 | 159.70 | full | 1,040,333 | 1,040,827 | VZRI01009526.1 Upupa epops voucher IZCAS:18810 isolate B10K-DU-012-37 scaffold66, whole genome shotgun sequence | Upupa epops (Eurasian hoopoe) | ||
175 | VXBV01001447.1 | 158.40 | full | 1,044,548 | 1,044,079 | VXBV01001447.1 Certhia brachydactyla voucher USNM:637436 isolate B10K-DU-002-20 scaffold1319, whole genome shotgun sequence | Certhia brachydactyla | ||
176 | GL873603.1 | 158.20 | full | 7,332,980 | 7,332,636 | Otolemur garnettii unplaced genomic scaffold scaffold00084, whole genome shotgun sequence. | Otolemur garnettii (small-eared galago) | ||
177 | WEKY01046505.1 | 158.10 | full | 20,882 | 21,329 | WEKY01046505.1 Picathartes gymnocephalus voucher LSUMZ:Ornithology:B30793 isolate B10K-DU-012-30 scaffold1381, whole genome shotgun sequence | Picathartes gymnocephalus | ||
178 | VZTK01003485.1 | 157.40 | full | 909,195 | 909,652 | VZTK01003485.1 Podargus strigoides voucher USNM:612703 isolate B10K-DU-001-40 scaffold2010, whole genome shotgun sequence | Podargus strigoides (tawny frogmouth) | ||
179 | VYXC01001033.1 | 157.00 | full | 1,564,197 | 1,564,644 | VYXC01001033.1 Platysteira castanea voucher USNM:627032 isolate B10K-DU-001-71 scaffold973, whole genome shotgun sequence | Platysteira castanea | ||
180 | VYZA01000020.1 | 157.00 | full | 1,781,132 | 1,780,676 | VYZA01000020.1 Neopipo cinnamomea voucher USNM:586435 isolate B10K-DU-004-15 scaffold_16, whole genome shotgun sequence | Neopipo cinnamomea | ||
181 | VZTQ01004941.1 | 157.00 | full | 316,650 | 316,188 | VZTQ01004941.1 Pelecanoides urinatrix voucher UWBM:60517 isolate B10K-DU-012-45 scaffold1286, whole genome shotgun sequence | Pelecanoides urinatrix | ||
182 | VWPO01000075.1 | 156.60 | full | 24,752 | 24,270 | VWPO01000075.1 Glareola pratincola voucher LSUMZ:Ornithology:B62518 isolate B10K-CU-031-08 scaffold_74, whole genome shotgun sequence | Glareola pratincola | ||
183 | WBMZ01013919.1 | 156.50 | full | 18,743 | 18,299 | WBMZ01013919.1 Atrichornis clamosus isolate B10K-DU-029-61 scaffold6366, whole genome shotgun sequence | Atrichornis clamosus | ||
184 | WAAC01014171.1 | 156.10 | full | 6,771 | 6,290 | WAAC01014171.1 Larus smithsonianus voucher USNM:641377 isolate B10K-DU-002-28 scaffold20827, whole genome shotgun sequence | Larus smithsonianus | ||
185 | VZUD01000129.1 | 155.80 | full | 1,521,305 | 1,520,824 | VZUD01000129.1 Cepphus grylle isolate OUT-0020 scaffold623_cov51, whole genome shotgun sequence | Cepphus grylle | ||
186 | JH721904.1 | 155.50 | full | 18,108,737 | 18,109,125 | JH721904.1 Chinchilla lanigera unplaced genomic scaffold scaffold00043, whole genome shotgun sequence | Chinchilla lanigera | ||
187 | VWZT01001738.1 | 155.50 | full | 121,589 | 121,141 | VWZT01001738.1 Pachycephala philippinensis voucher USNM:607512 isolate B10K-DU-001-28 scaffold2732, whole genome shotgun sequence | Pachycephala philippinensis | ||
188 | VXAY01001561.1 | 155.10 | full | 4,171,912 | 4,172,380 | VXAY01001561.1 Oxyruncus cristatus voucher USNM:632342 isolate B10K-DU-002-07 scaffold61, whole genome shotgun sequence | Oxyruncus cristatus (sharpbill) | ||
189 | VZDJ01000301.1 | 154.90 | full | 7,807,899 | 7,808,360 | VZDJ01000301.1 Cyanoderma ruficeps isolate SRU082 scaffold417_len11654140_cov47, whole genome shotgun sequence | Stachyris ruficeps | ||
190 | VWYP01033786.1 | 154.90 | full | 881,418 | 881,875 | VWYP01033786.1 Pycnonotus jocosus voucher USNM:643381 isolate B10K-DU-002-42 scaffold4137, whole genome shotgun sequence | Pycnonotus jocosus | ||
191 | NC_040903.2 | 154.60 | full | 222,523 | 222,068 | NC_040903.2 Phyllostomus discolor isolate MPI-MPIP mPhyDis1 chromosome 1, mPhyDis1.pri.v3, whole genome shotgun sequence | Phyllostomus discolor (pale spear-nosed bat) | ||
192 | VZTN01033974.1 | 154.50 | full | 780,204 | 779,765 | VZTN01033974.1 Erpornis zantholeuca voucher LSUMZ:Ornithology:B51177 isolate B10K-DU-002-58 scaffold78, whole genome shotgun sequence | Erpornis zantholeuca | ||
193 | VWPS01000004.1 | 154.30 | full | 7,680,182 | 7,680,626 | VWPS01000004.1 Menura novaehollandiae voucher USNM:632118 isolate B10K-CU-030-46 scaffold_3, whole genome shotgun sequence | Menura novaehollandiae (superb lyrebird) | ||
194 | VXAH01000193.1 | 153.40 | full | 645,843 | 646,288 | VXAH01000193.1 Piprites chloris voucher USNM:625579 isolate B10K-DU-007-02 scaffold_123_2, whole genome shotgun sequence | Piprites chloris (white-winged piprites) | ||
195 | VXAI01000074.1 | 152.80 | full | 2,388,383 | 2,388,863 | VXAI01000074.1 Rostratula benghalensis voucher USNM:613014 isolate B10K-DU-006-20 scaffold_70, whole genome shotgun sequence | Rostratula benghalensis (greater painted-snipe) | ||
196 | VZUC01000002.1 | 152.80 | full | 4,251,334 | 4,251,814 | VZUC01000002.1 Rissa tridactyla isolate OUT-0021 scaffold3_cov42, whole genome shotgun sequence | Rissa tridactyla (black-legged kittiwake) | ||
197 | SWJQ01000270.1 | 152.60 | full | 1,885,717 | 1,885,254 | SWJQ01000270.1 Zosterops borbonicus isolate HGM_15179 scaffold220_size2916324, whole genome shotgun sequence | Zosterops borbonicus | ||
198 | VXBN01012033.1 | 152.50 | full | 1,267,098 | 1,267,561 | VXBN01012033.1 Sinosuthora webbiana voucher USNM:633249 isolate B10K-DU-002-08 scaffold176, whole genome shotgun sequence | Paradoxornis webbianus | ||
199 | VZSH01000034.1 | 152.30 | full | 3,052,174 | 3,051,713 | VZSH01000034.1 Nothoprocta ornata isolate B10K-MSB-03 scaffold_30, whole genome shotgun sequence | Nothoprocta ornata | ||
200 | VZRG01000161.1 | 152.00 | full | 8,356 | 8,815 | VZRG01000161.1 Erythrocercus mccallii voucher LSUMZ:Ornithology:B45295 isolate B10K-DU-002-60 scaffold_159, whole genome shotgun sequence | Erythrocercus mccallii | ||
201 | NW_024104359.1 | 151.60 | full | 166,378 | 166,829 | NW_024104359.1 Pipra filicauda isolate LSUMZ 115617 unplaced genomic scaffold, ASM394559v2 scaffold244_size1468961_pilon, whole genome shotgun sequence | Pipra filicauda | ||
202 | VXAU01004203.1 | 151.50 | full | 306,560 | 306,078 | VXAU01004203.1 Formicarius rufipectus voucher USNM:613308 isolate B10K-DU-001-43 scaffold317, whole genome shotgun sequence | Formicarius rufipectus | ||
203 | VWYL01027248.1 | 150.70 | full | 829,856 | 830,319 | VWYL01027248.1 Zosterops hypoxanthus voucher USNM:608699 isolate B10K-DU-001-36 scaffold1050, whole genome shotgun sequence | Zosterops hypoxanthus | ||
204 | CM019151.1 | 150.70 | full | 169,292,620 | 169,292,183 | CM019151.1 Naja naja isolate NN01 chromosome 4, whole genome shotgun sequence | Naja naja | ||
205 | QVOM02000058.1 | 150.40 | full | 97,643,511 | 97,643,075 | QVOM02000058.1 Salvator merianae strain LG2117 Scaffold_58, whole genome shotgun sequence | Tupinambis merianae | ||
206 | EF523390.1 | 150.30 | full | 141,612 | 141,170 | Gallid herpesvirus 2 strain RB-1B, complete genome. | Gallid herpesvirus 2 (Marek's disease virus type 1) | ||
207 | EF523390.1 | 150.30 | full | 729 | 1,171 | Gallid herpesvirus 2 strain RB-1B, complete genome. | Gallid herpesvirus 2 (Marek's disease virus type 1) | ||
208 | PTEW01000005.1 | 149.50 | full | 4,035,331 | 4,034,868 | PTEW01000005.1 Nothoprocta perdicaria voucher ROM:ORN:Ctin4 isolate Ctin4 scaffold_4, whole genome shotgun sequence | Nothoprocta perdicaria | ||
209 | VWYY01000494.1 | 149.50 | full | 228,486 | 228,941 | VWYY01000494.1 Ptilorrhoa leucosticta voucher C:138661 isolate B10K-CU-031-17 scaffold_488, whole genome shotgun sequence | Ptilorrhoa leucosticta | ||
210 | WEIY01000060.1 | 149.50 | full | 1,093,190 | 1,093,647 | WEIY01000060.1 Pteruthius melanotis isolate B10K-IZ-033-77 scaffold_40_2, whole genome shotgun sequence | Pteruthius melanotis | ||
211 | AF243438.1 | 149.40 | full | 139,944 | 139,503 | Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome. | Marek's disease herpesvirus type 1 strain MD5 | ||
212 | AF243438.1 | 149.40 | full | 1,676 | 2,117 | Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome. | Marek's disease herpesvirus type 1 strain MD5 | ||
213 | VXBY01000438.1 | 149.20 | full | 303,346 | 303,810 | VXBY01000438.1 Leiothrix lutea voucher USNM:643454 isolate B10K-DU-002-43 scaffold_430, whole genome shotgun sequence | Leiothrix lutea (red-billed leiothrix) | ||
214 | VZSE01000213.1 | 148.90 | full | 3,546,111 | 3,546,559 | VZSE01000213.1 Promerops cafer isolate B10K-UC-030-53 scaffold20, whole genome shotgun sequence | Promerops cafer (Cape sugarbird) | ||
215 | VZSL01000004.1 | 148.60 | full | 8,145,394 | 8,145,857 | VZSL01000004.1 Sylvia atricapilla isolate OUT-0013 Super-Scaffold_3, whole genome shotgun sequence | Sylvia atricapilla (blackcap) | ||
216 | NW_013658602.1 | 148.60 | full | 292,439 | 292,876 | NW_013658602.1 Thamnophis sirtalis isolate EDBJR-23777 unplaced genomic scaffold, Thamnophis_sirtalis-6.0 Scaffold922, whole genome shotgun sequence | Thamnophis sirtalis | ||
217 | VZTR01023963.1 | 148.30 | full | 261,351 | 261,797 | VZTR01023963.1 Chaetops frenatus voucher UWBM:52975 isolate B10K-DU-012-41 scaffold1371, whole genome shotgun sequence | Chaetops frenatus (Rufous rock-jumper) | ||
218 | VXBF01015703.1 | 148.20 | full | 493,244 | 492,796 | VXBF01015703.1 Oenanthe oenanthe voucher USNM:627655 isolate B10K-DU-001-74 scaffold159, whole genome shotgun sequence | Oenanthe oenanthe (Northern wheatear) | ||
219 | VZTD01000671.1 | 147.90 | full | 298,803 | 298,356 | VZTD01000671.1 Rhagologus leucostigma isolate B10K-DU-029-40 scaffold91, whole genome shotgun sequence | Rhagologus leucostigma | ||
220 | VZSB01003388.1 | 147.70 | full | 4,925,287 | 4,924,817 | VZSB01003388.1 Caloenas nicobarica isolate OUT-0007 ScfYJcd_319, whole genome shotgun sequence | Caloenas nicobarica | ||
221 | CM014239.1 | 147.40 | full | 28,699,230 | 28,699,637 | CM014239.1 Rhinolophus ferrumequinum isolate MPI-CBG mRhiFer1 chromosome 14, whole genome shotgun sequence | Rhinolophus ferrumequinum (greater horseshoe bat) | ||
222 | VZRD01000073.1 | 147.40 | full | 3,000,748 | 3,001,198 | VZRD01000073.1 Tachuris rubrigastra voucher LSUMZ:Ornithology:B48222 isolate B10K-CU-031-13 scaffold_71, whole genome shotgun sequence | Tachuris rubrigastra | ||
223 | QJSC01022279.1 | 146.90 | full | 1,497,421 | 1,496,923 | QJSC01022279.1 Calidris pygmaea strain Meinypilgyno scaf_16960, whole genome shotgun sequence | Eurynorhynchus pygmeus | ||
224 | NW_016690322.1 | 146.70 | full | 2,234,400 | 2,234,850 | NW_016690322.1 Lepidothrix coronata isolate B3197 unplaced genomic scaffold, Lepidothrix_coronata-1.0 Scaffold142, whole genome shotgun sequence | Lepidothrix coronata | ||
225 | SJPD01000035.1 | 146.60 | full | 8,921,621 | 8,922,042 | SJPD01000035.1 Varanus komodoensis strain SLA01 scaffold28, whole genome shotgun sequence | Varanus komodoensis | ||
226 | VZRZ01003282.1 | 146.50 | full | 303,530 | 303,090 | VZRZ01003282.1 Climacteris rufus voucher MVMA:354 isolate B10K-DU-029-53 scaffold1734, whole genome shotgun sequence | Climacteris rufa (rufous treecreeper) | ||
227 | VZUA01401161.1 | 146.00 | full | 475 | 934 | VZUA01401161.1 Horornis vulcanius voucher LSUMZ:Ornithology:B52647 isolate B10K-DU-029-69 C13701689, whole genome shotgun sequence | Horornis vulcanius | ||
228 | NIFN02008794.1 | 145.80 | full | 24,326,986 | 24,327,492 | NIFN02008794.1 Strix occidentalis caurina voucher CAS:ORN:98821 isolate Sequoia Super-Scaffold_12_obj, whole genome shotgun sequence | Strix occidentalis caurina | ||
229 | AZIM01000241.1 | 145.40 | full | 483,095 | 483,530 | Ophiophagus hannah scaffold241.1, whole genome shotgun sequence. | Ophiophagus hannah (king cobra) | ||
230 | WEIW01000967.1 | 145.20 | full | 287,929 | 288,399 | WEIW01000967.1 Chloropsis hardwickii isolate B10K-IZ-033-78 scaffold_877, whole genome shotgun sequence | Chloropsis hardwickii | ||
231 | VZUI01037144.1 | 145.20 | full | 16,852 | 17,314 | VZUI01037144.1 Cettia cetti isolate OUT-0056 NODE_9402_length_34282_cov_13.0085_ID_18803, whole genome shotgun sequence | Cettia cetti | ||
232 | QUSF01000026.1 | 145.00 | full | 1,328,302 | 1,327,848 | QUSF01000026.1 Chloebia gouldiae isolate Red01 scaffold_26, whole genome shotgun sequence | Erythrura gouldiae (Gouldian finch) | ||
233 | HG009219.1 | 144.80 | full | 3,809,983 | 3,809,537 | HG009219.1 Serinus canaria genomic scaffold, SCA1_u11, whole genome shotgun sequence | Serinus canaria (common canary) | ||
234 | CM040314.1 | 144.70 | full | 21,613,571 | 21,614,022 | CM040314.1 Lamprotornis superbus isolate SS15 chromosome 9, whole genome shotgun sequence | Lamprotornis superbus | ||
235 | VWYI01048803.1 | 144.20 | full | 299,954 | 299,498 | VWYI01048803.1 Anthoscopus minutus voucher USNM:642205 isolate B10K-DU-011-42 scaffold8882, whole genome shotgun sequence | Anthoscopus minutus | ||
236 | VZSS01000017.1 | 144.10 | full | 14,830,484 | 14,830,935 | VZSS01000017.1 Poecile atricapillus voucher CUMV:Bird:55912 isolate OUT-0023 scaffold_11, whole genome shotgun sequence | Poecile atricapilla (Black-capped chickadee) | ||
237 | ULFR01000030.1 | 144.00 | full | 8,038,051 | 8,038,489 | ULFR01000030.1 Pseudonaja textilis genome assembly, contig: phap_PSETE__EBS10XV2PHAP194, whole genome shotgun sequence | Pseudonaja textilis | ||
238 | WBNE01000058.1 | 144.00 | full | 3,922,993 | 3,922,535 | WBNE01000058.1 Copsychus sechellarum isolate OUT-0061 scaffold_16, whole genome shotgun sequence | Copsychus sechellarum | ||
239 | CM020345.1 | 143.90 | full | 22,518,863 | 22,519,313 | CM020345.1 Catharus ustulatus isolate bCatUst1 chromosome 10, whole genome shotgun sequence | Catharus ustulatus | ||
240 | VWZV01012212.1 | 143.80 | full | 759,421 | 758,973 | VWZV01012212.1 Irena cyanogastra voucher USNM:607434 isolate B10K-DU-001-26 scaffold238, whole genome shotgun sequence | Irena cyanogaster | ||
241 | VZTP01040065.1 | 143.30 | full | 287 | 733 | VZTP01040065.1 Prunella fulvescens voucher UWBM:57993 isolate B10K-DU-012-46 scaffold7155, whole genome shotgun sequence | Prunella fulvescens | ||
242 | WAAG01071076.1 | 143.10 | full | 113,322 | 112,865 | WAAG01071076.1 Tichodroma muraria voucher UWBM:61504 isolate B10K-DU-012-47 scaffold17291, whole genome shotgun sequence | Tichodroma muraria | ||
243 | VZRT01000002.1 | 142.90 | full | 572,569 | 573,027 | VZRT01000002.1 Panurus biarmicus voucher UWBM:59726 isolate B10K-DU-030-18 scaffold_1, whole genome shotgun sequence | Panurus biarmicus | ||
244 | VZSR01000247.1 | 142.70 | full | 3,704,131 | 3,703,674 | VZSR01000247.1 Brachypodius atriceps voucher LSUMZ:Ornithology:B50336 isolate OUT-0037 Sct0y12_247, whole genome shotgun sequence | Pycnonotus atriceps | ||
245 | WBNL01000214.1 | 142.60 | full | 303,625 | 303,135 | WBNL01000214.1 Calcarius ornatus voucher USNM:641413 isolate B10K-DU-015-28 scaffold_211, whole genome shotgun sequence | Calcarius ornatus | ||
246 | VXBI01002031.1 | 142.30 | full | 961,031 | 960,576 | VXBI01002031.1 Toxostoma redivivum voucher USNM:636895 isolate B10K-DU-002-15 scaffold1236, whole genome shotgun sequence | Toxostoma redivivum | ||
247 | VWZP01006975.1 | 142.10 | full | 19,581 | 19,134 | VWZP01006975.1 Dicaeum eximium voucher USNM:608695 isolate B10K-DU-001-34 scaffold1004, whole genome shotgun sequence | Dicaeum eximium | ||
248 | CM000996.3 | 142.00 | full | 30,649,906 | 30,649,495 | CM000996.3 Mus musculus chromosome 3, GRCm39 reference primary assembly C57BL/6J | Mus musculus (house mouse) | ||
249 | VZRV01007514.1 | 141.90 | full | 98,657 | 99,113 | VZRV01007514.1 Falcunculus frontatus voucher MVMA:020 isolate B10K-DU-029-77 scaffold3109, whole genome shotgun sequence | Falcunculus frontatus (crested shrike-tit) | ||
250 | KN976777.1 | 141.50 | full | 1,035,078 | 1,035,365 | KN976777.1 Mandrillus leucophaeus isolate KB7577 unplaced genomic scaffold Scaffold452, whole genome shotgun sequence | Mandrillus leucophaeus (drill) | ||
251 | VWZS01010331.1 | 141.40 | full | 1,275,889 | 1,275,438 | VWZS01010331.1 Rhabdornis inornatus voucher USNM:607544 isolate B10K-DU-001-29 scaffold1348, whole genome shotgun sequence | Rhabdornis inornatus | ||
252 | MCFN01000925.1 | 141.10 | full | 51,881 | 52,364 | Callipepla squamata strain Texas jcf7180005233987, whole genome shotgun sequence. | Callipepla squamata (scaled quail) | ||
253 | WBNG01000012.1 | 140.50 | full | 4,468,246 | 4,468,821 | WBNG01000012.1 Elachura formosa voucher IZCAS:20218 isolate B10K-IZCAS-20218 scaffold_8, whole genome shotgun sequence | Elachura formosa (spotted wren-babbler) | ||
254 | VZTT01034730.1 | 140.40 | full | 6,536 | 6,986 | VZTT01034730.1 Buphagus erythrorhynchus voucher KANU:26688 isolate B10K-DU-012-02 scaffold43567, whole genome shotgun sequence | Buphagus erythrorhynchus (red-billed oxpecker) | ||
255 | VYZK01000052.1 | 140.00 | full | 938,430 | 937,984 | VYZK01000052.1 Prunella himalayana voucher USNM:616447 isolate B10K-DU-013-18 scaffold_51, whole genome shotgun sequence | Prunella himalayana | ||
256 | JH167478.1 | 139.90 | full | 706,287 | 706,475 | JH167478.1 Heterocephalus glaber unplaced genomic scaffold scaffold2462, whole genome shotgun sequence | Heterocephalus glaber (naked mole-rat) | ||
257 | CM008039.1 | 139.80 | full | 49,601,871 | 49,602,150 | CM008039.1 Cervus elaphus hippelaphus isolate Hungarian chromosome 32, whole genome shotgun sequence | Cervus elaphus hippelaphus | ||
258 | VWYX01000544.1 | 139.80 | full | 41,084 | 40,573 | VWYX01000544.1 Chaetorhynchus papuensis voucher C:163925 isolate B10K-CU-031-19 scaffold_539, whole genome shotgun sequence | Chaetorhynchus papuensis (pygmy drongo) | ||
259 | VXAC01008246.1 | 139.70 | full | 3,089 | 3,553 | VXAC01008246.1 Rhipidura dahli voucher USNM:616255 isolate B10K-DU-001-49 scaffold2277, whole genome shotgun sequence | Rhipidura dahli | ||
260 | VZRL01002082.1 | 139.60 | full | 272,306 | 272,766 | VZRL01002082.1 Origma solitaria voucher MVMA:3525 isolate B10K-DU-029-52 scaffold888, whole genome shotgun sequence | Origma solitaria | ||
261 | VYZS01338999.1 | 139.40 | full | 869 | 1,348 | VYZS01338999.1 Neodrepanis coruscans voucher FMNH:AVES:345711 isolate B10K-DU-002-79 C19836625, whole genome shotgun sequence | Neodrepanis coruscans (wattled asity) | ||
262 | NOIK01000199.1 | 139.40 | full | 1,532,246 | 1,531,606 | NOIK01000199.1 Anas zonorhyncha breed spot-billed scaffold201, whole genome shotgun sequence | Anas zonorhyncha | ||
263 | WBNP01005481.1 | 139.30 | full | 172,585 | 173,049 | WBNP01005481.1 Passerina amoena isolate OUT-0017 scaffold12107, whole genome shotgun sequence | Passerina amoena | ||
264 | PPHD01038320.1 | 139.20 | full | 6,327 | 6,791 | PPHD01038320.1 Bambusicola thoracicus isolate RTK389 B.A.C_38319, whole genome shotgun sequence | Bambusicola thoracica (Chinese bamboo-partridge) | ||
265 | VZTH01005965.1 | 139.10 | full | 281,186 | 281,641 | VZTH01005965.1 Aleadryas rufinucha isolate B10K-DU-029-36 scaffold2174, whole genome shotgun sequence | Aleadryas rufinucha (rufous-naped whistler) | ||
266 | VWYD01016125.1 | 138.90 | full | 26,158 | 25,708 | VWYD01016125.1 Catharus fuscescens voucher USNM:587444 isolate B10K-DU-001-17 scaffold3883, whole genome shotgun sequence | Catharus fuscescens | ||
267 | BHFT01083157.1 | 138.60 | full | 40,324 | 40,757 | BHFT01083157.1 Laticauda laticaudata KUZ | Laticauda laticaudata (blue-ringed sea krait) | ||
268 | VXAD01002609.1 | 138.40 | full | 2,812,738 | 2,813,194 | VXAD01002609.1 Dicrurus megarhynchus voucher USNM:616063 isolate B10K-DU-001-48 scaffold324, whole genome shotgun sequence | Dicrurus megarhynchus | ||
269 | VWZP01015815.1 | 138.10 | full | 2 | 446 | VWZP01015815.1 Dicaeum eximium voucher USNM:608695 isolate B10K-DU-001-34 C13276256, whole genome shotgun sequence | Dicaeum eximium | ||
270 | VZST01001037.1 | 137.90 | full | 163,950 | 164,407 | VZST01001037.1 Acrocephalus arundinaceus voucher personal:Bengt Hansson:3553254(H9-23) isolate OUT-0054 scaffold_1046, whole genome shotgun sequence | Acrocephalus arundinaceus (great reed warbler) | ||
271 | WBNB01000373.1 | 137.60 | full | 45,592 | 46,041 | WBNB01000373.1 Vidua chalybeata voucher MSB:Bird:30254 isolate OUT-0048 scaffold537, whole genome shotgun sequence | Vidua chalybeata | ||
272 | CM000939.1 | 137.50 | full | 8,008,751 | 8,009,155 | Anolis carolinensis chromosome 3, whole genome shotgun sequence. | Anolis carolinensis (green anole) | ||
273 | WAAB01004161.1 | 137.30 | full | 267,480 | 267,923 | WAAB01004161.1 Piaya cayana voucher USNM:632527 isolate B10K-DU-008-47 scaffold477, whole genome shotgun sequence | Piaya cayana (squirrel cuckoo) | ||
274 | WAAB01004161.1 | 137.30 | full | 269,655 | 270,098 | WAAB01004161.1 Piaya cayana voucher USNM:632527 isolate B10K-DU-008-47 scaffold477, whole genome shotgun sequence | Piaya cayana (squirrel cuckoo) | ||
275 | QZWQ01000147.1 | 137.20 | full | 523,386 | 523,852 | QZWQ01000147.1 Pavo cristatus isolate SKPea2016_SI scaffold152_len598757_cov0, whole genome shotgun sequence | Pavo cristatus (Indian peafowl) | ||
276 | CM000374.1 | 137.10 | full | 232,545,447 | 232,544,953 | Monodelphis domestica chromosome 7, whole genome shotgun sequence. | Monodelphis domestica (gray short-tailed opossum) | ||
277 | WBND01000612.1 | 137.10 | full | 238,994 | 239,447 | WBND01000612.1 Cercotrichas coryphoeus isolate OUT-0024 scaffold_547, whole genome shotgun sequence | Cercotrichas coryphoeus (Karoo scrub-robin) | ||
278 | CM000374.1 | 137.00 | full | 232,607,784 | 232,608,275 | Monodelphis domestica chromosome 7, whole genome shotgun sequence. | Monodelphis domestica (gray short-tailed opossum) | ||
279 | VWYW01000020.1 | 136.90 | full | 145,796 | 145,352 | VWYW01000020.1 Smithornis capensis voucher C:138652 isolate B10K-CU-031-20 scaffold_18, whole genome shotgun sequence | Smithornis capensis | ||
280 | VZRM01004286.1 | 136.70 | full | 297,387 | 296,947 | VZRM01004286.1 Grantiella picta voucher MVMA:2672 isolate B10K-DU-029-50 scaffold338, whole genome shotgun sequence | Grantiella picta | ||
281 | VWZM01008743.1 | 136.50 | full | 781,209 | 781,656 | VWZM01008743.1 Loxia leucoptera voucher USNM:601821 isolate B10K-DU-001-19 scaffold2168, whole genome shotgun sequence | Loxia leucoptera | ||
282 | VZSM01005724.1 | 136.40 | full | 605,403 | 604,956 | VZSM01005724.1 Loxia curvirostra voucher UWYMV:Bird:2860 isolate OUT-0011 scaffold492, whole genome shotgun sequence | Loxia curvirostra | ||
283 | VZTO01019064.1 | 136.20 | full | 62,147 | 62,620 | VZTO01019064.1 Syrrhaptes paradoxus voucher USNM:586725 isolate B10K-DU-003-42 scaffold341, whole genome shotgun sequence | Syrrhaptes paradoxus (Pallas's sandgrouse) | ||
284 | VWYN01013755.1 | 136.00 | full | 83,988 | 84,445 | VWYN01013755.1 Hippolais icterina voucher USNM:637402 isolate B10K-DU-002-18 scaffold12112, whole genome shotgun sequence | Hippolais icterina (icterine warbler) | ||
285 | NW_020716611.1 | 135.90 | full | 43,885,855 | 43,885,419 | NW_020716611.1 Notechis scutatus unplaced genomic scaffold, TS10Xv2-PRI ULFQ01000001.1, whole genome shotgun sequence | Notechis scutatus | ||
286 | VZZX01004843.1 | 135.80 | full | 2,191,062 | 2,191,519 | VZZX01004843.1 Hirundo rustica voucher USNM:626475 isolate B10K-DU-001-67 scaffold53, whole genome shotgun sequence | Hirundo rustica (Barn swallow) | ||
287 | VZTX01018267.1 | 135.50 | full | 3,063 | 3,524 | VZTX01018267.1 Pardalotus punctatus voucher MVMA:289 isolate B10K-DU-029-51 scaffold21206, whole genome shotgun sequence | Pardalotus punctatus (spotted pardalote) | ||
288 | VXAN01000046.1 | 135.50 | full | 4,416,373 | 4,416,830 | VXAN01000046.1 Sylvietta virens voucher USNM:642858 isolate B10K-DU-009-59 scaffold_37, whole genome shotgun sequence | Sylvietta virens (green crombec) | ||
289 | VZSK01000402.1 | 135.30 | full | 1,641,695 | 1,641,244 | VZSK01000402.1 Erithacus rubecula isolate OUT-0015 sc0000022_2, whole genome shotgun sequence | Erithacus rubecula (European robin) | ||
290 | LR595705.1 | 135.10 | full | 3,861,597 | 3,861,144 | LR595705.1 Camarhynchus parvulus genome assembly, chromosome: 9, whole genome shotgun sequence | Camarhynchus parvulus | ||
291 | CM021223.1 | 135.00 | full | 35,396,914 | 35,397,202 | CM021223.1 Cervus hanglu yarkandensis isolate CEY-2017 chromosome 32, whole genome shotgun sequence | Cervus elaphus yarkandensis | ||
292 | LR735556.1 | 134.90 | full | 27,712,180 | 27,711,683 | LR735556.1 Sarcophilus harrisii genome assembly, chromosome: 3 | Sarcophilus harrisii (Tasmanian devil) | ||
293 | VZRR01007610.1 | 134.70 | full | 218,635 | 219,090 | VZRR01007610.1 Oreocharis arfaki isolate B10K-DU-029-42 scaffold2557, whole genome shotgun sequence | Oreocharis arfaki | ||
294 | QRBI01000134.1 | 134.70 | full | 3,960,635 | 3,960,178 | QRBI01000134.1 Hirundo rustica rustica isolate Chelidonia Super-Scaffold_43, whole genome shotgun sequence | Hirundo rustica rustica | ||
295 | QGOO02000013.1 | 134.40 | full | 26,683,283 | 26,682,878 | QGOO02000013.1 Mus spicilegus strain ZRU musp714_scaffold_00013b, whole genome shotgun sequence | Mus spicilegus (steppe mouse) | ||
296 | VXAZ01007116.1 | 134.40 | full | 300,423 | 299,977 | VXAZ01007116.1 Gymnorhina tibicen voucher USNM:632142 isolate B10K-DU-002-05 scaffold1099, whole genome shotgun sequence | Cracticus tibicen (Australian magpie) | ||
297 | VXAX01005547.1 | 134.20 | full | 617,492 | 617,940 | VXAX01005547.1 Leptocoma aspasia voucher USNM:608697 isolate B10K-DU-001-35 scaffold1224, whole genome shotgun sequence | Leptocoma aspasia | ||
298 | VXBU01001756.1 | 134.10 | full | 1,341,717 | 1,341,261 | VXBU01001756.1 Bombycilla garrulus voucher USNM:638986 isolate B10K-DU-002-23 scaffold40, whole genome shotgun sequence | Bombycilla garrulus | ||
299 | VWYZ01000008.1 | 133.90 | full | 2,099,697 | 2,099,248 | VWYZ01000008.1 Rhodinocichla rosea voucher LSUMZ:Ornithology:B26906 isolate B10K-CU-031-12 scaffold_5, whole genome shotgun sequence | Rhodinocichla rosea | ||
300 | LR735556.1 | 133.70 | full | 27,752,906 | 27,753,403 | LR735556.1 Sarcophilus harrisii genome assembly, chromosome: 3 | Sarcophilus harrisii (Tasmanian devil) |
Note: this table contains only the first 300 sequences.
Alignment
There are various ways to view or download the seed alignments that we store. You can use a sequence viewer to look at them, or you can look at a plain text version of the sequence in a variety of different formats. More...
View options
You can view Rfam seed alignments in your browser in various ways. Choose the viewer that you want to use and click the "View" button to show the alignment in a pop-up window.
Formatting options
You can view or download Rfam seed alignments in several formats. Check either the "download" button, to save the formatted alignment, or "view", to see it in your browser window, and click "Generate".
Download
Download a gzip-compressed, Stockholm-format file containing the seed alignment for this family. You may find RALEE useful when viewing sequence alignments.
Submit a new alignment
We're happy receive updated seed alignments for new or existing families. Submit your new alignment and we'll take a look.
Secondary structure
This section shows a variety of different secondary structure representations for this family. More...
You can view the secondary structure of the family using the VARNA applet. You can see more information about VARNA iself here.
Current Rfam structure
26 out of 106 basepairs are significant at E-value=0.05
R-scape optimised structure
27 out of 175 basepairs are significant at E-value=0.05
- Colours
- Statistically significant basepair with covariation
- 97% conserved nucleotide
- 90% conserved nucleotide
- 75% conserved nucleotide
- 50% conserved nucleotide
- Nucleotides
- R: A or G
- Y: C or U
Tip: The diagrams are interactive:
you can pan and zoom to see more details
or hover over nucleotides and basepairs.
R-scape is a method for testing whether covariation analysis supports the presence of a conserved RNA secondary structure. This page shows R-scape analysis of the secondary structure from the Rfam seed alignment and a new structure with covariation support that is compatible with the same alignment.
To find out more about the method, see the R-scape paper by Rivas et al., 2016. The structures are visualised using R2R.
Species distribution
Sunburst controls
HideLineage
Move your mouse over the main tree to show the lineage of a particular node.
You can move this pane by dragging it.
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Change the size of the sunburst
Colour assignments
Archea | Eukaryota |
Bacteria | Other sequences |
Viruses | Unclassified |
Viroids | Unclassified sequence |
Selections
Click on a node to select that node and its sub-tree.
Clear selection
This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the adjacent tab. More...
Tree controls
HideThe tree shows the occurrence of this RNA across different species. More...
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Please note: for large trees this can take some time. While the tree is loading, you can safely switch away from this tab but if you browse away from the family page entirely, the tree will not be loaded.
Trees
This page displays the predicted phylogenetic tree for the alignment. More...
Note: You can also download the data file for the seed tree.
Structures
For those sequences which have a structure in the Protein DataBank, we generate a mapping between EMBL, PDB and Rfam coordinate systems. The table below shows the structures on which the Telomerase-vert family has been found.
Original order | PDB ID | PDB chain ID | PDB Residues | Bit score | View |
---|---|---|---|---|---|
0 | 7TRE | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
1 | 7QXS | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
2 | 7V9A | R | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
3 | 7BG9 | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
4 | 7TRD | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
5 | 8OUE | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
6 | 7QXB | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
7 | 7TRF | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
8 | 7TRC | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
9 | 7BGB | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
10 | 8OUF | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
11 | 7QXA | B | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
12 | 7V99 | R | 14 - 451 | 306.90 | PDBe | RCSB PDB | PDBj | NDB |
Motif matches
There are 7 motifs which match this family.
This section shows the Rfam motifs that match sequences within the seed alignment of this family. Users should be aware that the motifs are structural constructs and do not necessarily conform to taxonomic boundaries in the way that Rfam families do. More...
Original order | Motif Accession | Motif Description | Number of Hits | Fraction of Hits | Sum of Bits | Image |
---|---|---|---|---|---|---|
7 | RM00003 | C-loop motif | 8 | 0.216 | 92.5 | |
7 | RM00004 | CRC binding motif | 5 | 0.135 | 48.2 | |
7 | RM00005 | CsrA/RsmA binding motif | 12 | 0.324 | 115.4 | |
7 | RM00008 | GNRA tetraloop | 14 | 0.378 | 179.1 | |
7 | RM00010 | Kink turn 1, 3' bulge | 27 | 0.730 | 350.4 | |
7 | RM00029 | UNCG tetraloop | 21 | 0.568 | 237.4 | |
7 | RM00030 | U-turn motif | 4 | 0.108 | 47.5 |
References
This section shows the database cross-references that we have for this Rfam family.
Literature references
-
Chen JL, Blasco MA, Greider CW Cell 2000;100:503-514. Secondary structure of vertebrate telomerase RNA. PUBMED:10721988
-
Antal M, Boros E, Solymosy F, Kiss T Nucleic Acids Res 2002;30:912-920. Analysis of the structure of human telomerase RNA in vivo. PUBMED:11842102
-
Fragnet L, Kut E, Rasschaert D J Biol Chem. 2005;280:23502-23515. Comparative functional study of the viral telomerase RNA based on natural mutations. PUBMED:15811851
External database links
Gene Ontology: | GO:0007004 (telomere maintenance via telomerase); GO:0003720 (telomerase activity); GO:0000333 (telomerase catalytic core complex); |
Sequence Ontology: | SO:0000390 (telomerase_RNA); |
Curation and family details
This section shows the detailed information about the Rfam family. We're happy to receive updated or improved alignments for new or existing families. Submit your new alignment and we'll take a look.
Curation
Seed source | Machado Lima A | ||||||
Structure source | Published; PMID:10721988; Machado Lima A | ||||||
Type | Gene; | ||||||
Author | Machado Lima A | ||||||
Alignment details |
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Model information
Build commands |
cmbuild -F CM SEED
cmcalibrate --mpi CM
|
Search command |
cmsearch --cpu 4 --verbose --nohmmonly -T 19.69 -Z 2958934 CM SEQDB
|
Gathering cutoff | 70.0 |
Trusted cutoff | 70.0 |
Noise cutoff | 69.9 |
Covariance model | Download |