This family is a member of clan (CL00011), which contains the following 2 members:GlmY_tke1 GlmZ_SraJ
Wikipedia annotation Edit Wikipedia article
There are various ways to view or download the seed alignments that we store. You can use a sequence viewer to look at them, or you can look at a plain text version of the sequence in a variety of different formats. More...
You can view Rfam seed alignments in your browser in various ways. Choose the viewer that you want to use and click the "View" button to show the alignment in a pop-up window.
You can view or download Rfam seed alignments in several formats. Check either the "download" button, to save the formatted alignment, or "view", to see it in your browser window, and click "Generate".
Submit a new alignment
We're happy receive updated seed alignments for new or existing families. Submit your new alignment and we'll take a look.
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Click on a node to select that node and its sub-tree.
This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the More....
The tree shows the occurrence of this RNA across different species. More...
Please note: for large trees this can take some time. While the tree is loading, you can safely switch away from this tab but if you browse away from the family page entirely, the tree will not be loaded.
This page displays the predicted phylogenetic tree for the alignment. More...
Note: You can also download the data file for the seed tree.
There are 3 motifs which match this family.
This section shows the Rfam motifs that match sequences within the seed alignment of this family. Users should be aware that the motifs are structural constructs and do not necessarily conform to taxonomic boundaries in the way that Rfam families do. More...
|Number of Hits
|Fraction of Hits
|Sum of Bits
|Rho independent terminator 1
|Rho independent terminator 2
This section shows the database cross-references that we have for this Rfam family.
Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, Altuvia S; Curr Biol 2001;11:941-950. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. PUBMED:11448770
Urban JH, Vogel J PLoS Biol. 2008;6:e64. Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation. PUBMED:18351803
Reichenbach B, Maes A, Kalamorz F, Hajnsdorf E, Gorke B Nucleic Acids Res. 2008;36:2570-2580. The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli. PUBMED:18334534
Righetti F, Nuss AM, Twittenhoff C, Beele S, Urban K, Will S, Bernhart SH, Stadler PF, Dersch P, Narberhaus F Proc Natl Acad Sci U S A. 2016;113:7237-7242. Temperature-responsive in vitro RNA structurome of Yersinia pseudotuberculosis. PUBMED:27298343
External database links
Curation and family details
This section shows the detailed information about the Rfam family. We're happy to receive updated or improved alignments for new or existing families. Submit your new alignment and we'll take a look.
|Bateman A, Gardner PP
cmbuild -F CM SEED
cmcalibrate --mpi CM
cmsearch --cpu 4 --verbose --nohmmonly -E 1000 -Z 549862.597050 CM SEQDB