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Clan: RyeA-RyeB (CL00105)


RyeA/RyeB clan

The RyeA/RyeB clan contains the RNA families RyeA and RyeB. These two families overlap as part of a bidirectional sRNA locus in E. coli

This clan contains 2 families and the total number of sequence regions in the clan is 407.

Literature references

  1. Balbontin R, Figueroa-Bossi N, Casadesus J, Bossi L, J Bacteriol. 2008;190:4075-4078.: Insertion hot spot for horizontally acquired DNA within a bidirectional small-RNA locus in Salmonella enterica. 18390661


This clan contains the following 2 member families:

SraC_RyeA SdsR_RyeB

Secondary structures

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.


The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family Num. regions Alignment
SdsR_RyeB (RF00111) 222 (54.5%) View
SraC_RyeA (RF00101) 185 (45.5%) View