SNORD49 clan

The SNORD49 clan contains the RNA families SNORD49, snoZ112 and snoU49. Researchers at the plant snoRNA database have established that the following arabadopsis, human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: snoU49 and U49 [1].

This clan contains 3 families and the total number of sequence regions in the clan is 1,882.

Literature references

1. Brown JW, Echeverria M, Qu LH, Lowe TM, Bachellerie JP, Huttenhofer A, Kastenmayer JP, Green PJ, Shaw P, Marshall DF, Nucleic Acids Res 2003;31:432-435.: Plant snoRNA database. 12520043

Members

This clan contains the following 3 member families:

SNORD49 snoZ112 snoU49

External database links

External sites:

1: http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/conservation

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family	Num. regions	Alignment
snoU49 (RF01300)	340 (18.1%)	View
snoZ112 (RF00337)	427 (22.7%)	View
SNORD49 (RF00277)	1,115 (59.2%)	View