SCARNA3 clan

The SCARNA3 clan contains the RNA families SCARNA24 and SCARNA3. The following bioinformatic methods were used to confirm the relationship between these families: CMSEARCH and PRC [1,2].

This clan contains 2 families and the total number of sequence regions in the clan is 1,331.

Literature references

1. Nawrocki EP, Kolbe DL, Eddy SR, Bioinformatics. 2009;25:1335-7.: Infernal 1.0: inference of RNA alignments. 19307242
2. Madera M, Bioinformatics. 2008;24:2630-2631.: Profile Comparer: a program for scoring and aligning profile hidden Markov models. 18845584

Members

This clan contains the following 2 member families:

SCARNA24 SCARNA3

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family	Num. regions	Alignment
SCARNA3 (RF00565)	642 (48.2%)	View
SCARNA24 (RF00422)	689 (51.8%)	View