Rfam: Seed sequence alignment for RF01725

URS0000D6C2B3_12908/1-126 unclassified sequences 0.0 URS0000D69EC4_12908/1-126 unclassified sequences 0.0 URS0000D6C339_12908/1-126 unclassified sequences 0.0 URS0000D66231_12908/1-118 unclassified sequences 0.0 URS0000D6B1F5_12908/1-118 unclassified sequences 0.0 URS0000D69102_12908/1-118 unclassified sequences 0.0 URS0000D67608_12908/1-126 unclassified sequences 0.0 URS0000D69E2F_12908/1-115 unclassified sequences 0.0 URS0000D65B8C_12908/1-126 unclassified sequences 0.0 URS0000D692D0_12908/1-116 unclassified sequences 0.0 URS0000D6982B_12908/1-116 unclassified sequences 0.0 URS0000D6697D_12908/1-116 unclassified sequences 0.0 URS0000D68150_12908/1-97 unclassified sequences 0.0 URS0000D6B7F6_12908/1-116 unclassified sequences 0.0 URS0000D67C21_12908/1-120 unclassified sequences 0.0 URS0000D6B14C_12908/1-121 unclassified sequences 0.0 URS0000D65BDD_12908/1-118 unclassified sequences 0.0 URS0000D65C3A_12908/1-134 unclassified sequences 0.0 URS0000D68C47_12908/1-104 unclassified sequences 0.0 URS0000D66C1E_12908/1-107 unclassified sequences 0.0 URS0000D6A86B_12908/1-109 unclassified sequences 0.0 URS0000D66BC0_12908/1-98 unclassified sequences 0.0 URS0000ABBA94_12908/1-103 unclassified sequences 0.0 URS0000AB7C76_12908/1-96 unclassified sequences 0.0 URS0000AB7791_12908/1-111 unclassified sequences 0.0 URS0000D67F8D_12908/1-112 unclassified sequences 0.0 URS0000D6961B_12908/1-91 unclassified sequences 0.0 URS0000D6B1F8_12908/1-91 unclassified sequences 0.0 URS0000D6C9C7_12908/1-91 unclassified sequences 0.0 URS0000D68613_12908/1-91 unclassified sequences 0.0

UAAUAUCAUCAGGAGC.GG.UUUc.......g-UAU............................u......ugAAAC.C.CACCA.ACC.G..AGCccagauA-----a..............auca.ugGUCA..CGGUGGUUagag................ccuU.---aaac................gcuAGAUGCGCCCA............gGAAA.....................................................................................aUGGGAA..aCAUGAUUAGCCGCCu AAUCAUCAUCAGGAGU.GG.UUUc.......aUGA-............................u......ugAAAC.C.CGCCA.ACC.G..AGCcuagauA-----a..............auca.agGUCG..CGGUGGUUagag................ccuU.---aaac................gcuAGAUGUGCCCA............gGAAA.....................................................................................aUGGGAA..aCAUGAUUAGCCGCCu AGUUAACAUCAGGAGU.GG.UUUc.......gUAG-............................u......ugAAAC.C.CGCCA.ACC.G..AGCccagauA-----a..............auca.ugGUCA..CGGUGGUUagag................ccuU.---aaac................gcuAGAUGUGCCUA............gGAAA.....................................................................................aUAGGAA..aCAUAAAGCCGCCUGa AGUUAACAUCAGGAGU.GG.UUUc.......a-UAG............................u......ugAAAC.C.CGCCA.ACC.G..AGCccagauA-----a..............auca.ugGUUA..CGGUGGUUagag................ccuU.---aaac................gcuAGAUGUGCCUA............gGAAA.....................................................................................aUAGGAA..a-CAUAAAG------. AGUUAACAUCAGGAGU.GG.UUUc.......a-UAG............................u......ugAAAC.C.CGCCA.ACC.G..AGCccagauA-----a..............auca.ugGUCA..CGGUGGUUagag................ccuU.---aaac................gcuAGAUGUGCCUA............gGAAA.....................................................................................aUAGGAA..a-CAUAAAG------. UAAUAUCAUCAGGAGU.GG.UUUc.......gUAG-............................u......ugAAAC.C.CGCCA.ACC.G..UGCccagauAAA---.................uc.agGGAA.gCGGUGGUUagag................ccuU.---aaac................gcuAGAUGUGCCUA............gGAAA.....................................................................................aUAGGAA..a-CACAAAG------. AAACAACAUCAGGAGU.GG.UUUc.......a-UAU............................u......ugAAAC.C.CGCCA.ACC.G..AGCccagauA-----a..............auca.agGCUA..CGGUGGUUuga.................uccU.---uaaa...............cgguAGAUGUGCCUA............gGAAA.....................................................................................aUAGGAA..aCAUAGUAAGCCGCCu UAAUAACAUCAGGAGC.AG.UUUc.......uUUA-............................u......ugAAAC.U.CGCCA.ACC.G.aGUC......AGUAA-......................GACA.gCGGUGGUUuga.................uccA.---uaaa...............ugguAGAUGUGCCC-.............AAAA......................................................................................-GGGAA..aCAUAUAAAGCCACCu UAUCAACAUCAGGAGU.GG.UUUc.......a-UAG............................u......ugAAAC.C.CACCA.ACC.G..AGCcu.agaU-----aa............auca..ggGAUC..CGGUGGUUagac................cucU.---aaau................gguAGAUGUGCCCA............gGAAA.....................................................................................aUGGGAA..aCAUAAUAAGCCACCu CCGAUACAUCAGGAGC.GG.UUUc......agAUA-............................a.......gAAAC.C.CGCCA.ACC.G..ACC......CAAGUG......................GGCA..CGGUGGUUuga.................uccU.---uaaa...............cgguAGAUGUGCCUC.............UUAU......................................................................................GAGGAA..uCUUAAAGCCGCCUGa AUUCAACAUCAGGAGC.GG.UUU........cAAAA............................c......ugUAAC.C.CGCCA.ACC.G..ACC......CAAAUG......................GGCA..CGGUGGUUag...................auC.---cuuaa.............gcgguAGAUGUGCCUU.............UGAU......................................................................................UAGGAA..aUCUUAAAAGCUGCCu ACUAAUCAUCAGGAGA.GG.UUU........cAUAA............................c......ugAAGC.C.CACCA.ACC.G..ACC......CAAAUG......................GGCA..CGGUGGUUcga.................uccU.---ugaa...............cgguAGAUGCGCCUU.............UAAA......................................................................................AAGGAAa.uCACAAAGCCGCCUG. CAUUGUCAUCAAGAGU.UG.GGA.........UGAC.....................................ACCC.A.CACCA.ACC.U..GCU......UACCG-......................AGCA..AGGUGGUC.......................-aAAC.......................-GAUGUGGCC-.............UUAG......................................................................................-GGCAA..cCAAUCGCGUGUCAGc UUUUUACAUUUAGAGU.AG.AGA.........UUA-.....................................ACUC.U.CGCCA.ACC.U..GCU......UUUAUC......................GGUA..AGGUGGCA.......................-aAUU.......................-AAUGUGGCUUuaugc...aaaua----.......................................................................uaaau.....uugcaAAGCAAc.gUCAAAGGGUAAAUCu ---AUACAUCAAGAG-.AG.AGC.........AAAA.....................................GCUC.-.CACCA.ACC.A..GCC......UAAAUC.....................gGGCA.aCGGUGGUC.......................-cAAA.......................CGAUGUGGUUUuagguu.aaaacc----.......................................................................uugauaaagguaccaAAACAA...CAAUUCGAUUGAGGc AAAGAACAUUAAGAGA.AG.UUUgg.....ugAA--............................aa.....cuAAGC.U.CAGCA.ACC.U..GGG......AAAGGC.....................aCCCA..AGGUGCUUcca..................guA.---uuua................cugGGAUGAGGCCCg..........au---A.......................................................................ga..........auuGGGCAA...CAAAGUGUCUGAGUa UAAAGGCAUUACGAGU.GG.UCUgg.....uu--AA............................aa.....cuAGAU.C.CGGCA.ACC.U..GGG......AGGACA......................CCCA..AGGUGCCCgcucau............ccgcaA.---gga.................agaGGAUGUGGCCU.............GAAA......................................................................................GGGCAA...C-AAAGUGUCCGGU. GCCCCGCAUCAAGAGAcAG.GAC.........UUCG.....................................GUCC.U.CGCCA.ACC.U..GCC......GACUCG......................GGUA..AGGUGGUCgcc.................gcuA.---aga.................gcgGGAUGUGGCUGauucaggcaaaaa----.......................................................................aacgagc.uaaaaauCAGCAA..cUUAGUAGUAACGAGc UUAUAACAUCAAGACA.AG.GGC.........CGAC.....................................GCCC.U.GACCA.ACC.U..GCC......CCCCG-......................GGCA..AGGUGGACg.....................cG.A--aa...................gcGGAUGUGGCCU.............AAAG.......................................................................u............uuAGGCAA...CCAAGCGGGAGUA-. AUCAAGCAUCAAGAGA.AG.AACua....aua----............................cuc..aaugGUUC.U.CGCCA.ACC.U..GCU......AAACCU......................GGUA..AGGUGGUCga....................gUaAAA.......................-GAUGUGGCU-.............UCGC......................................................................................-AGCAA...UU-AAGAGGUCAAU. ACAAGGCAUCCAGAG-.UG.AGC.........GGAA.....................................GCUC.-.CGCCA.ACC.U..GCC......CAAGC-......................GGUA..AGGUGGCUgcc.................cgcG.---uaag................cggGGAUGCGGUCG.............AUUC.....................................................................................uCGACAA..uCCGAGGGAUCUCCAc GCUCUGCAUCAAGAG-.CC.GAC.........--UU.....................................GUCG.G.CGCCA.ACC.U..GCC......UCCCCG......................GGCA..AGGUGGCUag....................cG.AA-ag....................cGGAUGCGGCC-.............UUGA......................................................................................-GGCAA...CCAAGCGGGAGCA-. CAGAUUCAUCAAGAG-.AG.GGC.........UGAC.....................................GCCC.-.CGCCA.ACC.U..GCU......GUUUG-......................AGCA..AGGUGGUUauuc...............cguaA.---gg....................aAGAUGUGGCUU.............AUU-......................................................................................CAGCAA...CCUCAAGCGUCACC. UAAUCACAUCAAGAG-.AG.GGU.........GAAA.....................................GCCC.-.CGCCA.ACC.A..GCC......UAAUCG......................GGCA.aCGGUGGUC.......................-uUAA.......................-GAUGCGACCC.............UUA-......................................................................................GGGUAA...-CAAUUCGAUUAAGg GAAUUACAUCAAGAG-.AG.AGC.........GAAA.....................................GCUC.-.CACCA.ACC.A..GCC......UAAUCG......................GGCA.aCGGUGGUU.......................-cAAC.......................-GAUGAGACCGaa........aaa----.......................................................................gaaaua..cuuaaguAGGUAA...CAAUACGAUUGAGC. CAAUUACAUCAAGAG-.AG.AGC.........GUAA.....................................GCUC.-.CACCA.ACC.A..GCC......UAAUCG......................GGCA.aCGGUGGUU.......................-cAAC.......................-GAUGAGACCGaaag.....agga----.......................................................................auaac....uuaaguAGGUAA..c-AAUACGAUUGGGC. AAGAUGCAUUAGGAAA.GG.GGU.........---U.....................................AUCC.C.UGCCA.ACC.U..GCA......UACCG-......................UGCG.aAGGUGGUA.......................-.AUA.......................-UAUGCGGCC-.............AAAA......................................................................................-GGCAA...A-AAUUAGGUCUCA. AAGGUGCAUUAAGAAA.GG.GGU.........---U.....................................AUCC.C.UGCCA.ACC.U..GCA......UACCG-......................UGCG.aAGGUGGUA.......................-.GUA.......................-UAUGCGGCC-.............AAAA......................................................................................-GGCAA...A-AAUUAGGUCUCA. AAGGUGCAUUAAGAAA.GG.GGU.........---U.....................................AUCC.C.UGCCA.ACC.U..GCA......UACCG-......................UGCG.aAGGUGGUA.......................-.AUA.......................-UAUGCGGCC-.............AAAA......................................................................................-GGCAA...AAGUUAGGUCUCA-. AAGAUGCAUUGAGAAA.GG.GAU.........---U.....................................AUCC.C.UGCCA.ACC.U..GCA......UACCG-......................UGCG.aAGGUGGUA.......................-.AUA.......................-UAUGCGGCC-.............AAAA......................................................................................-GGCAA...-AAAUUCGGUCUCA.