Rfam: Seed sequence alignment for RF01725

URS0000D67090_12908/1-89 unclassified sequences 0.0 URS0000D6BC9A_12908/1-89 unclassified sequences 0.0 URS0000AB3A17_279238/1-134 Novosphingobium aromaticivorans DSM 12444 0.0 URS0000ABD0DA_12908/1-95 unclassified sequences 0.0 URS0000ABBC40_12908/1-97 unclassified sequences 0.0 URS0000ABAD1C_12908/1-97 unclassified sequences 0.0 URS0000AB806A_12908/1-99 unclassified sequences 0.0 URS0000AB6F36_12908/1-97 unclassified sequences 0.0 URS0000ABD554_12908/1-98 unclassified sequences 0.0 URS0000ABCB36_365044/1-108 Polaromonas naphthalenivorans CJ2 0.0 URS0000D6CA1D_12908/1-102 unclassified sequences 0.0 URS0000D6CCF2_12908/1-116 unclassified sequences 0.0 URS0000D6CB27_12908/1-116 unclassified sequences 0.0 URS0000D6CE73_12908/1-114 unclassified sequences 0.0 URS0000D6C174_12908/1-106 unclassified sequences 0.0 URS0000D6B134_12908/1-106 unclassified sequences 0.0 URS0000D6654E_12908/1-106 unclassified sequences 0.0 URS0000D69404_12908/1-106 unclassified sequences 0.0 URS0000D6AB56_12908/1-106 unclassified sequences 0.0 URS0000D69B9E_12908/1-137 unclassified sequences 0.0 URS0000ABA03C_12908/1-112 unclassified sequences 0.0 URS0000AB5A3B_12908/1-110 unclassified sequences 0.0 URS0000AB3AD6_12908/1-111 unclassified sequences 0.0 URS0000D6BFB6_12908/1-111 unclassified sequences 0.0 URS0000D66F6B_12908/1-111 unclassified sequences 0.0 URS000080E18F_32630/1-96 synthetic construct 0.0 URS000080E2F6_32630/1-97 synthetic construct 0.0

AUUGUGCAUGAAGAG-.AG.G--.........GUAA.....................................--CC.U.CAGCA.ACC.U..AGA......AAGCAA......................ACAA..AGGUGCU-.......................-.AAA.......................-GAUGCGGUUU.............UUU-......................................................................................AAACAA...AAAAUAUGCUAUU-. AUUAUGCAUGAAGAG-.AG.G--.........GCAA.....................................--CC.U.CAGCA.ACC.U..AGA......AAGCAA......................ACAA..AGGUGCU-.......................-.AAA.......................-GAUGCGGUUU.............UUU-......................................................................................AAACAA...AAAAUAUGCUUAU-. CCCCAACAUCGAGAG-.UU.GGG........gUGAC............................g.......cUCCA.A.CGCCA.ACC.U..GCC......GUUCCG......................GGCA..AGGUGGUAcccgauccgcaaggcggccccggC.---cgaauug.........cgaaaggGGAUGUGGCCG.............AUC-......................................................................................CGGCAA...CCAAACGGACACGG. ACAUUACAUUUUGAGA.GG.GUU.........--AA.....................................AACC.C.UGCCA.ACC.U..GCA......UAACCU......................UGCG.aAGGUGGUA.......................-uUAU.......................-GAUGUGGCU-.............UAUA......................................................................................-AGCAA...AAAAAAGGUCCUUU. AAACUACAUUUUGAG-.AG.GGA.........GUAA.....................................UCCC.-.UGCCA.ACC.U..GCA......AUAACC......................UGCG.aAGGUGGUA.......................A.CUU.......................UAAUGUGGCUU.............AAU-......................................................................................AAGCAA...AAAAAGGUUCUUUC. AAAUAACAUUUCGAG-.AG.GGA.........GCAA.....................................UCCC.-.UGCCA.ACC.U..GCA......UUAACC......................UGCG.aAGGUGGUA.......................A.CUU.......................UAAUGUGGCUU.............AUU-......................................................................................AAGCAA...AAAAAGGUUUCUCC. GAACAACAUCUAUAGA.GA.AGC.........UUAU.....................................GCUU.-.CACCA.ACC.U..GCC......AAGAUC.....................uGGCA.aAGGUGGUU.......................-cAAC.......................-GAUGUGGCUU.............UAAU......................................................................................UAGCAA..c-AAUAAGAUCGUAG. AUUUUACAUCUAUAGA.GA.AGG.........GUGA.....................................CCUU.-.CACCA.ACC.A..GCC......AGACUU......................GGCA.aCGGUGGUU.......................-cAAC.......................-GAUGUGGCUU.............UUG-......................................................................................AAGCAA..cAAUAAAGUCAGAU-. AUCAUACAUCUAUAGA.GA.AGG.........GUAA.....................................CCUU.-.CACCA.ACC.A..GCC......AAGACU.....................uGGCA.aCGGUGGUU.......................-cAAC.......................-GAUGUGGCUU.............UUG-......................................................................................AAGCAA..cAAUAAAGUCAGAU-. GCUCAUCAUUAAGAGA.UG.GGU.........UGAC.....................................GCCC.A.CACCA.ACC.U..GCC......AUUCGG......................GGCA..AGGUGGUUugc.................uuuC.---aa...................gcAGAUGUGGCUCc...........uCGA-.....................................................................................aGAGCAA...CCAAGCCGGCAGCG. UCCACGCAUUAAGA--.CU.UGG.........GAGA.....................................CCAA.-.-GCCA.ACC.U..GCC......GGUCCA......................GGCA..AGGUGGUUac...................gaG.---aaa..................ucGGAUGUGAGCU.............AUUU.......................................................................c.............aAGCUAA...CAAAUGGACUCUC-. GUAGUACAUCACGAG-.CG.ACC.........AACA.....................................GGUC.-.CGGCA.ACC.G..GGA......-UUU--......................CCCA..CGGUGCCAuuucgc...........gaaaugC.---ga....................aAGAUGUGGCUAcg.........ccAA--.......................................................................cag.........gcgUAGCAA..cGGGCUGGCUCAGUUg GUAGUACAUCACGAGC.GA.C-C.........AACU.....................................G-GU.C.CGGCA.ACC.G..GGA......-UUU--......................CCCA..CGGUGCCAuuucgc...........gaaaugC.---ga....................aAGAUGUGGUUAcg........cca----.......................................................................gca........ggcgUAGCAA..cGGGCUGGCUCAGUUg CAGCAACAUCAGGAGU.GA.CC-.........AAUU.....................................-GGU.C.CGGCA.ACC.G..GGC......AAUG--......................CCCA..CGGUGCCAuccc................gugC.---aagc................gggAGAUGUGGCUUcg.........cu-U--.......................................................................cg..........gcgAAGCAAcgg-GCCNNNNNNNNNN. UCGCUACAUCACGAGC.GA.C-C.........AACU.....................................G-GU.C.CGGCA.ACC.G..GGA......A-----......................UCCA..CGGUGCCAagu.................cacU.---ucgg................ugaCGAUGUGGCCC............cGCAA.....................................................................................gGGGCAA..cGGACCCGUGACUCGc GCGCUACAUCACGAG-.CG.ACC.........AAAC.....................................GGUC.-.CGGCA.ACC.G..GGA......A-----......................UCCA..CGGUGCCAagu.................cacU.---ucgg................ugaCGAUGUGGCCC............cGCAA.....................................................................................gGGGCAA..cGGAUCGCAUGGUGGc GCGCUACAUCACGAG-.CG.ACC.........AUAC.....................................GGUC.-.CGGCA.ACC.G..GGA......A-----......................UCCA..CGGUGCCAagu.................cacU.---ucgg................ugaCGAUGUGGCCC............cGCAA.....................................................................................gGGGCAA..cGGAUCGCAUGGCGGc GCGCUACAUCACGAG-.CG.ACC.........AUAC.....................................GGUC.-.CGGCA.ACC.G..GGA......A-----......................UCCA..CGGUGCCAagu.................cacU.---ucgg................ugaCGAUGUGGCCC............cGCAA.....................................................................................gGGGCAA..cGGAUCGCAUGGUGAc GCGCUACAUCACGAG-.CG.ACC.........AUAC.....................................GGUC.-.CGGCA.ACC.G..GGA......A-----......................UCCA..CGGUGCCAagu.................cacU.---ucgg................ugaCGAUGUGGCCC............cGCAA.....................................................................................gGGGCAA..cGGAUCGCAUGGUGGc UUGCAGCAUCAAGAAG.CC.UUC........gUAG-............................c.......uGAAG.G.CGGCA.ACC.G..AGCc....cACACC-.................g...gGCCG..CGGUGCCAcc....................cA.---caa.................cggGGAUGCGGCGCgac......gagcG---caaac............................................................accaacggugc.....ucgugGCGCAA..aCGGCUGGCGAAGGUc GGUAUGCAUCUAGAAG.UC.ACUu......ggCGA-............................c.......aAGUG.A.UGGCA.ACC.G..AGC......CCACCA.....................gGCCA..CGGUGCCUcg...................cuG.U--aac..................ggGGAUGCGGCGC.............GACG.....................................................................................aGCGCAA...AAGAACUGGUGCUC. AAUCAGCAUCUAGAAG.CA.CCU........cGAAA....................................gAGGU.G.UGGCA.ACC.G..AGC......CCACCA.....................gGCCA..CGGUGCCUcc...................caA.---caa.................cggGGAUGCGGCGC.............GACG.....................................................................................aGCGCAA...AAGAACUGGUGCUC. AAUCAGCAUCUAGAAA.CA.CCU........cGCAA....................................gAGGU.G.UGGCA.ACC.G..AGC......CCACCA.....................gGCCA..CGGUGCCUccc..................aaC.---aaa.................uggGGAUGCGGCGC.............GACG.....................................................................................aGCGCAA...AAGAACUGGUGCUC. AACCAGCAUCUAGAAA.CA.CCU........cGAAA....................................gAGGU.G.UGGCA.ACC.G..AGC......CCACCA.....................gGCCA..CGGUGCCUcc...................cgA.C--aac..................ggGGAUGCGGCGC.............GACG.....................................................................................aGCGCAA...AAGAACUGGUGCUCg AACCAGCAUCUAGAAA.CA.CCU........cGCAA....................................gAGGU.G.UGGCA.ACC.G..AGC......CCACCA.....................gGCCA..CGGUGCCUcc...................caA.---caa.................cggGGAUGCGGCGC.............GACG.....................................................................................aGCGCAA...AAGAACUGGUGCUCg -----GGAUCACGAG-.GG.GG-.........-AGA.....................................--CC.C.CGGCA.ACC.U..GGG......ACGGAC.....................aCCCA..AGGUGCUC.......................A.CACcggag.............acgguGGAUCCGGCCC.............GAGA......................................................................................GGGCAA...CGAAGUCCGU----. -----GGAUCACGAG-.GG.G--.........GAGA.....................................--CC.C.CGGCA.ACC.U..GGG......ACGGAC.....................aCCCA..AGGUGCUC.......................A.CACcggag.............acgguGGAUCCGGCCC.............GAGA......................................................................................GGGCAA...CGAAGGUCCGA---.