Rfam: Seed sequence alignment for RF01725

URS0000D6CA82_12908/1-92 unclassified sequences 0.0 URS0000D6579C_12908/1-90 unclassified sequences 0.0 URS0000D696F5_12908/1-106 unclassified sequences 0.0 URS0000AB47A9_207954/1-104 Neptuniibacter caesariensis 0.0 URS0000D6CC1E_12908/1-103 unclassified sequences 0.0 URS0000AB3842_350702/1-104 Burkholderia cenocepacia PC184 0.0 URS0000AB3842_406425/1-104 Burkholderia cenocepacia MC0-3 0.0 URS0000AB3842_331272/1-104 Burkholderia cenocepacia HI2424 0.0 URS0000ABAB97_482957/1-104 Burkholderia lata 0.0 URS0000AB6E8D_12908/1-104 unclassified sequences 0.0 URS0000ABC303_12908/1-93 unclassified sequences 0.0 URS0000D6A7C7_351016/1-104 Roseobacter sp. AzwK-3b 0.0 URS0000ABAD9D_439375/1-110 Ochrobactrum anthropi ATCC 49188 0.0 URS0000ABABC5_262698/1-109 Brucella abortus bv. 1 str. 9-941 0.0 URS0000ABCF9E_444178/1-109 Brucella ovis ATCC 25840 0.0 URS0000ABCF9E_204722/1-109 Brucella suis 1330 0.0 URS0000D6582F_12908/1-103 unclassified sequences 0.0 URS0000D6CAC6_12908/1-101 unclassified sequences 0.0 URS0000D6CE26_12908/1-101 unclassified sequences 0.0 URS0000D6D10C_12908/1-101 unclassified sequences 0.0 URS0000D68251_12908/1-101 unclassified sequences 0.0 URS0000AB5814_12908/1-94 unclassified sequences 0.0 URS0000ABABEE_12908/1-95 unclassified sequences 0.0 URS0000D6BFBF_12908/1-117 unclassified sequences 0.0 URS0000AB63C5_12908/1-99 unclassified sequences 0.0 URS0000D68B26_12908/1-98 unclassified sequences 0.0 URS0000ABD393_365044/1-105 Polaromonas naphthalenivorans CJ2 0.0 URS0000AB3687_12908/1-96 unclassified sequences 0.0 URS0000D69192_12908/1-97 unclassified sequences 0.0 URS0000AB7C40_12908/1-95 unclassified sequences 0.0

AAGAUGCAUUAAGAAA.GG.GGU.........---U.....................................AUCC.C.UGCCA.ACC.U..GCA......UACCG-......................UGCG.aAGGUGGUA.......................-.AUA.......................-UAUGCGGCCA.............AAA-......................................................................................AGGCAA...A-AAUUAGGUCUCA. AAGAUGCAUUAAGAAA.GG.GGU.........---U.....................................AUCC.C.UGCCA.ACC.U..GCA......UACCG-......................UGCG.aAGGUGGUA.......................-.AUA.......................-UAUGCGGCC-.............AAAA......................................................................................-GGCAA...AAAUAGGUCUCA--. UCCCAGCAUCCAGAG-.AG.GCC........aUGG-....................................uGGCC.U.CGCCA.ACC.U..GCU......CCUCC-......................AGCA..AGGUGGCAucc.................cgaU.---caa.................gggAGAUGCGGCCC.............GACA......................................................................................GGGCAA...CGAAAGGAGAUCC-. AUUUAACAUCAAGAGU.AG.GGC.........UGAC.....................................GUCC.U.CACCA.ACC.U..GCC......AACCUG......................GGCA..AGGUGGUUgc...................uaU.---aa...................agCGAUGUGGUCG.............AUUC......................................................................................CGACAA...CGAAUCAGGUAGAC. AGUCAGCAUUUAGAGA.GG.GCU.........GACG.....................................CGCC.C.CGCCA.ACC.U..GCA......GCUUG-......................AGCA..AGGUGGUUacc.................ucgC.---aag..................agGGAUGUGGCCU.............GAU-......................................................................................AGGCAA..c-GUCGAGCGUUG--. AUCAAGCAUCCAGAG-.UC.GGG.........UUU-.....................................CCCG.A.CGCCA.ACC.U..GCC......CUCCCG......................GGCA..AGGUGGACgc...................ccU.---cga..................ggCGAUGCGGCCG.............AUUG.....................................................................................aCGGCAA...CGAAACGGGAGCAG. AUCAAGCAUCCAGAG-.UC.GGG.........UUU-.....................................CCCG.A.CGCCA.ACC.U..GCC......CUCCCG......................GGCA..AGGUGGACgc...................ccU.---cga..................ggCGAUGCGGCCG.............AUUG.....................................................................................aCGGCAA...CGAAACGGGAGCAG. AUCAAGCAUCCAGAG-.UC.GGG.........UUU-.....................................CCCG.A.CGCCA.ACC.U..GCC......CUCCCG......................GGCA..AGGUGGACgc...................ccU.---cga..................ggCGAUGCGGCCG.............AUUG.....................................................................................aCGGCAA...CGAAACGGGAGCAG. GUCAAGCAUCCAGAG-.UC.GGA.........UUC-.....................................UCCG.A.CGCCA.ACC.U..GCC......CUCCCG......................GGCA..AGGUGGACgc...................cuC.---uga..................ggCGAUGCGGCCG.............AUUU.....................................................................................aCGGCAA...CGAAACGGGAGCAG. AUCAAGCAUCCAGAG-.UC.GGA.........UUC-.....................................UCCG.A.CGCCA.ACC.U..GCC......CUCCCG......................GGCA..AGGUGGACgc...................cuC.---caa..................ggCGAUGCGGCCG.............AUUU.....................................................................................aCGGCAA...CGAAACGGGAGCAG. CAAGCACAUCGAGAGC.GG.ACU.........--AA.....................................AUUC.C.CACCA.ACC.C..GCA......UACUCA......................AGCA..AGGUGGUU.......................-.CAG.......................-CAUGUGGCC-.............AAAU......................................................................................-GGCAA...UCAACUGGGUAUCU. AUCGCACAUCAAGAGU.GA.GGC.........CUGU.....................................GCCU.C.UACCA.ACC.U..GCC......CUUCCC......................GGCA..AGGUGGUGucc.................gaaC.---aa...................ggAGAUGUGGCCA.............UGA-......................................................................................CGGCAA...CCAAGGGGAUCAU-. ACAUCACAUCAAGAG-.UU.GGG........gAGAC....................................gCCCA.A.CGCCA.ACC.U..GCC......UCUCCG......................GGCA..AGGUGGUAcucuc..............uguaA.---aga..................gaGGAUGUGGCCA.............AAC-......................................................................................CGGCAA...AUAUACGGACAAAG. ACCGCACAUCCAGAG-.UU.GGG........gCGAC....................................gCCCA.A.CGCCA.ACC.U..GCC......GUUCCG......................GGCA..AGGUGGUAcucc...............ccgaA.---agg..................gaGGAUGUUGCCG.............AAC-......................................................................................CGGCAA...UUAUACGGAUGAAG. ACCGCACAUCCAGAG-.UU.GGG........gCGAC....................................gCCCA.A.CGCCA.ACC.U..GCC......GUUCCG......................GGCA..AGGUGGUAcucc...............ccgaA.---agg..................gaGGAUGUGGCCG.............AAC-......................................................................................CGGCAA...UUAUACGGAUGAAG. ACCGCACAUCCAGAG-.UU.GGG........gCGAC....................................gCCCA.A.CGCCA.ACC.U..GCC......GUUCCG......................GGCA..AGGUGGUAcucc...............ccgaA.---agg..................gaGGAUGUGGCCG.............AAC-......................................................................................CGGCAA...UUAUACGGAUGAAG. CCUCAGCAUUAAGAG-.AG.GGC.........UGAC.....................................GCCC.-.CGCCA.ACC.U..GCA......GCUG--......................UGCA..AGGUGGUCucc.................cgcC.---ag...................ggAAAUGUGGCCU.............UCA-......................................................................................AGGCAA..cAACAGCGUCGGCCUc CCGCAACAUUAAGAG-.AG.GGC.........UGAC.....................................GCCC.-.CGCCA.ACC.U..GCA......GCUG--......................UGCA..AGGUGGUAcc...................ccG.AA-ag....................gGAAUGUGGCC-.............UUAA......................................................................................-GGCAA..cGACAGCGUCAGCCUc AGACAACAUUAAGAG-.AG.GGC.........UGAC.....................................GCCC.-.CGCCA.ACC.U..GCA......GCUG--......................UGCA..AGGUGGUAcc...................ccG.AA-ag....................gGAAUGUGGCC-.............UAAA......................................................................................-GGCAA..cGACAGCGUCAGCCUc AUCUUACAUCAAGAGA.GG.GCU.........GACG.....................................CGCC.C.CGCCA.ACC.U..GCG......GCCCG-......................UGCA..AGGUGGUUuuc..................ccU.---aaa.................gggAGAUGUGGCC-.............GAAA......................................................................................-GGCAA...UAUCGAGCGUC---. AACGUACAUCAAGAGA.GG.GCU.........GACG.....................................CGCC.C.CGCCA.ACC.U..GCA......GCUCG-......................UGCA..AGGUGGCAucc..................cgU.---aag..................ggAGAUGUGGCCA.............UAG-......................................................................................UGGCAA...UAUCGAGCGUC---. ACAUAGCAUCAAGAGU.AG.GAC.........UUG-.....................................UUCC.U.CACCA.ACC.U..GCA......ACUCCA.....................aAGCA..AGGUGGUC.......................-aAUA.......................-GAUGCGGC--.............AAUC......................................................................................--GCAA...ACAAUUGGAGAACA. GCCAUGCAUCCAGAGU.AG.GAG.........CUAG.....................................CUCC.U.CGCCA.ACC.U..GCA......ACUCCA.....................aAGCA..AGGUGGCC.......................-aAAU.......................-GAUGCGGC--.............AAUC......................................................................................--GCAA...CCAAUUGGAGAACA. CAUCAGCAUCAAGAGC.AA.GAU.........UAAA.....................................UUCU.U.CUCCA.ACC.U..GCC......CACUCC......................GGUA..AGGUGGAA.......................-aAAC.......................-GAUGCGGCAUucugc...aauac----.......................................................................aagga....ggaagaAUGGAA..aAAAGAGUAUUUUGUc AUCCUGUAUCAAGAGC.AG.AGU.........UAAU.....................................UCUC.U.CUCCA.ACC.U..GCU......AACUUC.....................uAGCA..AGGUGGAA.......................CaAAU.......................-GAUACGGC-U.............AUUC......................................................................................ACGCAA...CUAAAAGGAGAUCA. UAAUUGUAUCAAGAGC.AG.AGU.........UAAU.....................................UCUC.U.CUCCA.ACC.U..GCU......AGCUUC.....................uAGCA..AGGUGGAA.......................CaAAU.......................-GAUACGGC-U.............AUUC......................................................................................ACGCAA...CUAAAAGGAGAUC-. AGACAACAUCAAGAC-.UG.GAU........aGAAA....................................uAUUC.A.GACCA.ACC.U..GCC......AACUCG......................GGCA..AGGUGGUUagc..................gaA.---ag....................cAGAUGGGGCUU.............CUCG......................................................................................AAGCAA...CCAAACGAGCCAUU. UGCCAACAUCAAGAGA.AG.AGU.........AAA-.....................................ACUC.U.CGCCA.ACC.U..GCU......GCUCC-......................AGUA..AGGUGGUAc......................AaAAA.......................-GAUGAGGUC-.............AUUC......................................................................................-GACAA..u-GAUAGGAGUGUCA. UACAGAUAUCAAGAGC.AG.GAU.........UAAA.....................................UUCC.U.CUCCA.ACC.U..GCC......CUCUCU......................GGCA..AGGUGGAA.......................-aAAU.......................-GAUAUGGCU-.............UU-C......................................................................................-AGCAA..cUAAAGGAGGAAAAAu ACCUAGCAUCAAGAGA.AG.AGU.........UGU-.....................................ACUC.U.CUCCA.ACC.U..GCC......CAAUCC......................GGCA..AGGUGGAA.......................-aAAA.......................UGAUGUGGCA-.............-UUC......................................................................................-AGCAA..a-UAUAGGAGAUCGC.