Rfam: Seed sequence alignment for RF01725

URS0000D692EF_12908/1-115 unclassified sequences 0.0 URS0000D67B15_12908/1-108 unclassified sequences 0.0 URS0000D66B85_12908/1-112 unclassified sequences 0.0 URS0000D69BC7_12908/1-100 unclassified sequences 0.0 URS0000AB79AD_12908/1-121 unclassified sequences 0.0 URS0000D6B14B_12908/1-126 unclassified sequences 0.0 URS0000ABB37A_12908/1-131 unclassified sequences 0.0 URS0000D69F70_349521/1-112 Hahella chejuensis KCTC 2396 0.0 URS0000D69A00_12908/1-98 unclassified sequences 0.0 URS0000D6B015_12908/1-98 unclassified sequences 0.0 URS0000D6D1AA_12908/1-93 unclassified sequences 0.0 URS0000D66D39_12908/1-93 unclassified sequences 0.0 URS0000AB8299_12908/1-94 unclassified sequences 0.0 URS0000AB8CBC_12908/1-93 unclassified sequences 0.0 URS0000D6A989_391598/1-97 Flavobacteria bacterium BAL38 0.0 URS0000D6B299_12908/1-143 unclassified sequences 0.0 URS0000D692C4_12908/1-144 unclassified sequences 0.0 URS0000D67369_12908/1-90 unclassified sequences 0.0 URS0000D67002_12908/1-90 unclassified sequences 0.0 URS0000ABC10B_12908/1-92 unclassified sequences 0.0 URS0000D681C3_12908/1-94 unclassified sequences 0.0 URS0000ABBB59_12908/1-94 unclassified sequences 0.0 URS0000D657E1_12908/1-94 unclassified sequences 0.0 URS0000D67E8F_12908/1-94 unclassified sequences 0.0 URS0000AB31DF_12908/1-93 unclassified sequences 0.0 URS0000D68A5F_12908/1-111 unclassified sequences 0.0 URS0000D65AE6_12908/1-94 unclassified sequences 0.0 URS0000D6B2CE_12908/1-95 unclassified sequences 0.0 URS0000D6A5D8_313596/1-94 Robiginitalea biformata HTCC2501 0.0 URS0000D6B743_313598/1-97 Polaribacter sp. MED152 0.0

UACAUGCAUCAAGAUA.GG.UCUu.......uUUU-............................a.......aAGAC.C.UGCCA.ACC.G..AGC......UUCAAA......................GCCA..CGAUGGUAaguuc..............caacA.---aaa.................ggaAGAUGUGUCCG.............UAA-......................................................................................AGGAAA..aAACGAUCAACCGCCu GAAUAUCAUUAAGAGU.UC.CGU........gAAA-............................g......ucACGG.A.UGCCA.ACC.G..AUC.....cUUCGCA.....................gGGCA..CGGUGGAAa......................A.-AAa......................AGAUGAGAGGC.............UCGC......................................................................................ACCUAAa.aACAAAUAGCGAAUCc AUCCAACAUCAAGAGU.GA.CUC........aGCAA....................................uGAGU.A.CAGCA.ACC.G..AGC......CAGCCA.....................gGCCG..CGGUGCUUcc...................cgC.---ca...................ggGGAUGUGAUGCa...........cGAAA.......................................................................g.............uGUAUAA...AAACUUCUGGCCCUc ACACAACAUGAAGAGU.AA.CUG.........AAUU.....................................AGGU.U.CACCA.ACC.U..GCA......AA----......................UGUA..AGGUGGUUuc....................cU.---caa..................ggGCAUGUGACC-.............GUAA......................................................................................-GGUAA..uAUACAUGCCUCCUUc CCAGUGCGUUACGAGU.GG.UGUg.......a-CAG............................u.......cACAC.C.CGGCA.ACC.U..GGC......UCGGUC......................GCCA..AGGUGCCUgcuga..............cccgG.---aaacg.............gguugGGACGCGGCUUc...........uGAAA.....................................................................................gGAGCAA..c-GAAUGACCGGUUU. GACGCGCAUCACGAGC.GG.CUGccg..gggu----............................uuc..ccgnCGGU.C.CGGCA.ACC.U..GGG.....u-CGGAA.................g...cCCCA..AGGUGCCAgcc.................cacC.---cgacg..............guggGGAUGUGUUCG.............GCUC.......................................................................g............gcCGGCAA...CGAAGCUUCCGUCG. GAUGUUCAUCAGGAGA.GG.UCUg......agCAA-............................u.......cAGAC.C.CGGCA.ACC.U..GGG......CGGAAG.....................cCCCA..AGGUGCCUcccaau............cgagcC.---uucggguc........ugaaaggGGAUGUGGUCAg..........caAU--.......................................................................a............acUGGCAA...CGAAACUUCCUGGA. UUCGUGCAUCAAGAGA.AG.GAC.........UGAC.....................................GUCC.U.CACCA.ACC.U..GCC......GACCUG......................GGCA..AGGUGGUGcc...................agA.---a.....................cCGAUACAGGAAac.........au--U-uuguuuaa.......................................................gucaauaaugu........cgauUACCAA...--------------. AAAUAUCAUCAGGA--.CG.GGA.........GUAA.....................................UCCC.-.-ACCA.ACC.G..AGC......UUAA--......................GCCA..CGGUGGUUugu.................caaG.---ug...................acAGAUGAGCAGC.............AAA-......................................................................................GCUGAA...ACUAUCUGAAGCC-. UAUCAUCAUCAGGA--.CG.GGA.........GAAA.....................................UCCC.-.-ACCA.ACC.G..AGC......UUAG--......................GCCA..CGGUGGUUugu.................caaG.---ug...................acAGAUGAGCAGC.............AAU-......................................................................................GCUGAA...AAUAUCUGAAACC-. GUAUUGCAUAAUGAA-.CG.UU-.........UUUA.....................................-AAC.G.UACCA.ACC.G..ACA......UCUCAU......................UGCA..CGGUGGUU.......................-.UUG.......................-AAUGUGGGUG.............UCUC......................................................................................UGCCAA...AAUUAUGAGAAAU-. GUACUGCAUUAAGAA-.CG.-UU.........AUA-.....................................G-AC.G.UACCA.ACC.G..ACA......AACUCA.....................uUGCA..CGGUGGUU.......................-.UUG.......................-AAUGCGGGUG.............UCUC......................................................................................UACCAA...AAUAAUGAGAAAU-. AGAAAGCAUCAAGAA-.-C.ACA.........UAAU.....................................UGUG.-.UACCA.ACC.G..ACC......UUCCGA......................GGCA..CGGUGGUU.......................-.UAG.......................-AAUGCGGGAC.............AAUC......................................................................................GUUCAA...AAGUUUCGGAAAUC. CAUAAGCAUCAAGAA-.CA.C--.........UAAU....................................u--GU.G.UACCA.ACC.G..AUC......UUCCGA......................GACA..CGGUGGUU.......................-.UAG.......................-AAUGCGGGAC.............AAUC......................................................................................GUUCAA...AAGAUUCGGAAAUC. AUUAAGCAUCAAGAU-.AA.UCC.........AUU-.....................................GGGU.U.AGCCA.ACC.G..AUC......AACUCA.....................cGACA..CGGUGGCU.......................-.UAG.......................-UAUGCGGAAC.............AGUC......................................................................................GUUCAA...AUGUGUUGAGAAAUc AUAUAGCAUCAAGAA-.--.CGC.........UAUU.....................................GCG-.-.UACCA.ACC.G..ACA......GCUCGU......................UGCA..CGGUGGUU.......................-.UAG.......................-AAUGCG----.............----ggguuccucccaaacuaacgagaaauccuaaauucucuuguugcgguuuaauuuaaauuguaauaaaaaug...............------...----AAAA--AAAG. ACACUGCAUCAAGAA-.CG.C--.........AAAU.....................................--GC.G.UACCA.ACC.G..ACA......CGCUCG.....................uUGCA..CGGUGGUUuagaauguggggcuccucccaaaA.---uaacgagaaauccuaaauucucuUGUUGCGGUUUaa.........uuU---a....................................................................aau............ugUAAUAA...AAUGAAUAAAAAA-. GGGUCGCAUCAAGAA-.--.CGC.........UAAG.....................................GCG-.-.UACCA.ACC.G..ACA......GCUCGU......................UGCA..CGGUGGUU.......................-.UAG.......................-AAUGCGGGGA.............UCU-......................................................................................UCCCAA...ACAAACGAGAAAU-. AAAAAGCAUCAAGAA-.--.CGC.........GAAU.....................................GCG-.-.UACCA.ACC.G..ACA......GCUCGU......................UGCA..CGGUGGUU.......................-.UAG.......................-AAUGCGGGGG.............UCC-......................................................................................UCCCAA...AUUAACGAGAAAU-. GUUUAGCAUCAAGAA-.--.CGC.........UUAU.....................................GCG-.-.UACCA.ACC.G..ACA......CGCUCG.....................uUGCA..CGGUGGUU.......................-.UAG.......................-AAUGCGGGGC.............UCC-......................................................................................UCCCAA...AAAAACGAGAAAUC. GUUUUGCAUCAAGAA-.--.CGC.........UAAU.....................................GCG-.-.UACCA.ACC.G..ACA......CGCUCG.....................uUGCA..CGGUGGUU.......................-.UAG.......................-AAUGCGGGUA.............GCUC......................................................................................UACCAA...ACAAAUCGAGCUAAc GUUGAGCAUCAAGAA-.--.CGC.........UAAU.....................................GCG-.-.UACCA.ACC.G..ACA......CGCUCG.....................uUGCA..CGGUGGUU.......................-.UAG.......................-AAUGUGGGUG.............GCUC......................................................................................UACCAA...ACUAAUCGAGCUUUc GUAUAGCAUCAAGAA-.CG.CA-.........---A.....................................-UGC.G.UACCA.ACC.G..ACA......CACUCG.....................aUGCA..CGGUGGUU.......................-.UAG.......................-AAUGUGGAGA.............UAUU......................................................................................UCUCAA..aGAUUCGAGUAAUCUu ACAGUGCAUCAAGAA-.CG.CA-.........---A.....................................-UGC.G.UACCA.ACC.G..ACA......CACUCG.....................aUGCA..CGGUGGUU.......................-.UAG.......................-AAUGCGGAGA.............ACAA.....................................................................................cUCUCAA...AUUAAUCGAGUAAUc ACUUUGCAUCAAGAA-.CG.CA-.........---A.....................................-UGC.G.UACCA.ACC.G..ACA......UACUCG.....................aUGCA..CGGUGGUU.......................-.UAG.......................-AAUGCGGAGA.............AUAA.....................................................................................cUCUCAA...AUUUUCGAGUAAUC. GUAUUGCAUCAAGAA-.CG.C--.........A-AG.....................................--GC.G.UACCA.ACC.G..ACA......CUCGA-......................UGCA..CGGUGGUU.......................-.UAG.......................-AAUGUGGAGAuuaaa...ucuca----.......................................................................aauuau..cgagaaaUCUCAA..aCUUGUUGCAAUUUUu UAUUAGCAUCAAGAA-.CG.CU-.........---U.....................................-AGC.G.UACCA.ACC.G..ACU......AUUUCG.....................aAGCA..CGGUGGUU.......................-.UAG.......................-AAUGUGGGUA.............GCUC......................................................................................UGCCAA..aUUUUCGAGCAAUCUg UUACGACAUCAAGAA-.CG.CAU.........----.....................................AUGC.G.UACCA.ACC.G..ACU......AUCUCG.....................aAGCA..CGGUGGUU.......................-.UAG.......................-AAUGUGGGUA.............GCUC......................................................................................UACCAA..aAAUUCGAGCAAUCAg UUCCUGCAUCAGGAA-.--.CGC.........UAAG.....................................GCGC.G.UACCA.ACC.G..AGC......AUAAAA......................GCCA..CGGUGGUU.......................-.CAG.......................-AAUGCGGACG.............GU--......................................................................................CGUCAA..aAAAAUAAUUCCUUUc UGGCAGUAUCAGGAA-.CG.CAA.........GAA-.....................................UUGC.G.UACCA.ACC.G..AGC......AAAAAA......................GCUA..CGGUGGUU.......................-.UAG.......................-UAUACGGACA.............GUUC......................................................................................UGUCAA..aAUAAAUGAACAUCCa