Rfam: Seed sequence alignment for RF01725

URS0000D6BAB9_12908/1-103 unclassified sequences 0.0 URS0000D6D0DC_12908/1-98 unclassified sequences 0.0 URS0000ABABE4_12908/1-119 unclassified sequences 0.0 URS0000D6A027_12908/1-123 unclassified sequences 0.0 URS0000D69E8E_12908/1-115 unclassified sequences 0.0 URS0000D6C51E_12908/1-106 unclassified sequences 0.0 URS0000D675A9_12908/1-107 unclassified sequences 0.0 URS0000D6BCC2_12908/1-92 unclassified sequences 0.0 URS0000D683B1_12908/1-92 unclassified sequences 0.0 URS0000D659EF_12908/1-92 unclassified sequences 0.0 URS0000AB595F_12908/1-90 unclassified sequences 0.0 URS0000AB25C0_12908/1-90 unclassified sequences 0.0 URS0000AB7114_12908/1-90 unclassified sequences 0.0 URS0000AB5B63_12908/1-90 unclassified sequences 0.0 URS0000D6A563_12908/1-100 unclassified sequences 0.0 URS0000D69198_12908/1-101 unclassified sequences 0.0 URS0000D684C0_12908/1-101 unclassified sequences 0.0 URS0000D6BFCF_12908/1-100 unclassified sequences 0.0 URS0000D6B23C_12908/1-101 unclassified sequences 0.0 URS0000D6CFD0_12908/1-101 unclassified sequences 0.0 URS0000D6B532_12908/1-101 unclassified sequences 0.0 URS0000D6AD04_12908/1-100 unclassified sequences 0.0 URS0000D65888_12908/1-100 unclassified sequences 0.0 URS0000D6D1A8_12908/1-100 unclassified sequences 0.0 URS0000D68820_12908/1-113 unclassified sequences 0.0 URS0000AB2186_314285/1-108 Congregibacter litoralis KT71 0.0 URS0000AB18DC_314285/1-109 Congregibacter litoralis KT71 0.0 URS0000D66E9F_12908/1-122 unclassified sequences 0.0 URS0000D6B33E_122587/1-112 Neisseria meningitidis Z2491 0.0 URS0000D673AD_272831/1-112 Neisseria meningitidis FAM18 0.0

CACCAUCAUCAAGAA-.UG.CAG........aAGAA............................c.......aCUGC.A.UACCA.ACC.G..AGC......AGCCAA......................GCAG..CGGUGGUC.......................-aAUC.......................-GAUGAGGACC.............AAAA.....................................................................................aCGUCAA..aAAAAUGGAAAUCACa CAAUUGCAUCAGGAAU.CC.C--.........A-AA.....................................U-GG.G.UACCA.ACC.G..AGA.....gAACAUA.....................cUCCA..CGGUGGUA.......................-aAAC.......................-GAUGCGGACC.............GGAA......................................................................................GGUCAA..aAUAAAAGUAAUCUAc UUGGUGCAUCCAGAGC.GG.CUCgc....ccg--A-............................cgc...gguGAGC.C.CGGCA.ACC.U..GCC......CGGACC......................GGCA..AGGUGCUUcgcg................caaA.---ccca...............gcgcAGAUGUGGCCC.............AUAG......................................................................................CGGCAA..c-ACGAGGUCCAGCC. CGUCGUUAUCAAGAGC.GG.CGCa.......cAUU-............................c......guGUGC.C.CAGCA.ACC.U..GGG.....gUGGACA......................CCCA..AGGUGCUUucc..................uaC.---uuug................uagGGAUAUGGCGAcgg......cucu----.......................................................................aag.........ucgGCGCAA...CAAAGUGUCCCAUGa UUGCGUUAUCAAGAGC.GG.UGCa.......cUUC-............................c......guGCAC.C.CGGCA.ACC.U..GGG.....gUGGACA......................CCCA..AGGUGCUUucc..................uaC.---uuug................uagGGAUAUGGCUGagg.......ucu----.......................................................................acg........accaAAGCAA...CAAAGUG-------. UCGAAACAUCAAGAG-.CA.GUA.........UUAA.....................................U-CU.G.CACCA.ACC.G..AGC......ACGACA......................GCCA..CGGUGGUCa.....................aGa---u.....................aCGAUGUGGAAAua.........ag----.......................................................................uu..........uaaUUUCAA..aAAUAAGUCUUUAUGa UCGAAACAUCAAGAG-.CA.GUU.........UAAA.....................................AUCU.G.CACCA.ACC.G..AGC......ACGACA......................GCCA..CGGUGGUCa.....................aGa---u.....................aCGAUGUGGAAAua.........ag----.......................................................................uu..........uaaUUUCAA..aAAUAAGUCUUUAUGa GCGCUACAUCAAGAA-.U-.-AC.........UUAA.....................................GUGU.A.UACCA.ACC.G..AAC......--GA--......................-UAA..CGGUGGUU.......................-uAAC.......................-GAUGUGGGCA.............UCCU......................................................................................AGUCAA..aGUCGAUUCUCAUAAu GCGCAACAUCAAGAA-.-U.ACU.........UAAU.....................................UGUA.-.UACCA.ACC.G..AAC......--GA--......................-UAA..CGGUGGUU.......................-aAAC.......................-GAUGUGGGCA.............UCCU......................................................................................AGUCAA..aGUCGAUUCUCAUAAu GCGAUACAUCAAGAA-.-U.ACU.........UAAU.....................................UGUA.-.UACCA.ACC.G..AAC......--GA--......................-UAA..CGGUGGUU.......................-uAGU.......................-GAUGUGGGCA.............UCUU......................................................................................AGUCAA..aGUCGAUACUCAUAAa GCGUCACAUCAAGAA-.U-.-AC.........UUAA.....................................GUGU.A.UACCA.ACC.G..GAC......--GAU-......................--AA..CGGUGGUU.......................-uAGC.......................-GAUGUGGGCA.............UCAC......................................................................................AGUCAA...AAUCGAUUCUCAUA. GCGCUACAUCAAGAA-.-U.ACU.........UAAU.....................................UGUA.-.UACCA.ACC.G..GAC......--GAU-......................--AA..CGGUGGUU.......................-uAGC.......................-GAUGUGGGCA.............UCAC......................................................................................AGUCAA...AAUCGAUUCUCAUA. UUUCAACAUCAAGAA-.UA.CU-.........UAAA.....................................-UGU.A.UACCA.ACC.G..AAC......------......................GAUA.gCGGUGGUU.......................-uAGU.......................-GAUGUGGGCA.............UCCA......................................................................................AGUCAA...AAUCGAUUCUCAUA. ACACUACAUCAAGAA-.UA.CU-.........UAAA.....................................-UGU.A.UACCA.ACC.G..AAC......------......................GAUA.gCGGUGGUU.......................-aAGC.......................-GAUGUGGGCA.............UCAC......................................................................................AGUCAA...AAUCGAUUCUCAUA. AUUAAGCAUCAGGAGU.GA.AUA........aGCAA....................................uUAUU.C.UGCCA.ACC.U..GCU......UGAGGA.....................aAGUA..AGGUGGAA.......................-.UAC.......................-GAUGUGGUCU.............UAA-......................................................................................UGACAA...UUAAGUUCCUCAUCu AUUAAGCAUCAGGAGU.GA.AUA........aGUAA....................................uUAUU.C.UGCCA.ACC.U..GCU.....uAGAGG-.................a...aAGUA..AGGUGGAG.......................-.UAG.......................-GAUGUGGUCU.............UAA-......................................................................................UGACAA...UUAAGUUCCUCAUCa AUUAAGCAUCAGGAGU.GA.AUA........aGUAA....................................uUAUU.C.UGCCA.ACC.U..GCU.....uUGAGGA.....................aAGUA..AGGUGGAU.......................-.UAA.......................-GAUGUGGUCU.............UAA-......................................................................................UGACAA...UUAAGUUCCUCAUCa AAAAAGCAUCAGGAGU.GA.AUA........aGAAA....................................uUAUU.C.UGCCA.ACC.U..GCU......UGAGGA.....................aAGUA..AGGUGGAA.......................-.UAC.......................-GAUGUGGUCU.............UAA-......................................................................................UGACAA...UUAAGUUCCUCAUCa AUCAAGCAUCAGGAGU.GA.AUA........aGAAA....................................uUAUU.C.UGCCA.ACC.U..GCU.....uAGAGG-.................a...aAGUA..AGGUGGAG.......................-.UAG.......................-GAUGUGGUCU.............UAA-......................................................................................UGACAA...UUAAGUUCCUCAUCa AUUAAGCAUCAGGAGU.GA.AUA........aGAAA....................................uUAUU.C.UGCCA.ACC.U..GCU.....uUGAGGA.....................aAGUA..AGGUGGAG.......................-.UAG.......................-GAUGUGGUCU.............UAA-......................................................................................UGACAA...UUAAGUUCCUCAUCg AUUAAGCAUCAGGAGU.GA.AUA........aGAAA....................................uUAUU.C.UGCCA.ACC.U..GCU.....uUGAGGA.....................aAGUA..AGGUGGAG.......................-.UAG.......................-GAUGUGGUCU.............UAA-......................................................................................UGACAA...UUAAGUUCCUCAUCa GCAAUACAUCAUGAGU.GA.AUA........aGAAA....................................uUAUU.C.CGCCA.ACC.U..GCU......UGAGGA......................AGUA..AGGUGGCA.......................-.GAG.......................-AAUGUGGUCU.............UAAU......................................................................................UGACAA...UUAGGUUCCUCGUUg AUAAUGCAUCAAGAGU.GG.AUA........aUAAA....................................uUAUU.C.CGCCA.ACC.U..GCU......UGAGGA......................AGUA..AGGUGGCA.......................-.GAG.......................-AAUGUGGUCU.............UAAU......................................................................................UGACAA...UUAGGUUCCUCGUUg AUAGUACAUCAGGAGU.GA.AUA........aGAAA....................................uUAUU.C.CGCCA.ACC.U..GCU......UGAGGA......................AGUA..AGGUGGCA.......................-.GAG.......................-AAUGUGGUCU.............UAAU......................................................................................UGACAA...UUUGGUUCCUCGUUg CUUCAGCAUCACGAGU.GA.CCG........gGAAA....................................cCGGU.C.CGGCA.ACC.G..GGG......UUGG--......................UCCA..CGGUGCCAgcu.................caaU.---cggcaac..........gguuggGGAUGUGGCGG.............GAAA......................................................................................CCGCAA...CGGGCCCGGUCC--. AAGGGGCAUCAAGAG-.GG.GU-.........-UC-.....................................GUCC.C.CACCA.ACC.G..CCC......ACUCCG......................GGAA..CGGUGGUU.......................-aAUC.......................-GAUGCGCCAUaggc....ccugc----.......................................................................ugcg......cagguAUGGAA..c-AAAAAGGAGAUAU. CGACUGCAUCAAGAG-.-G.GGC.........AUA-.....................................GCCC.-.CACCA.ACC.G..CCC......ACUCCG......................GGAA..CGGUGGUC.......................CaAAU.......................-GAUGCGCCAAuggcu...cugca----.......................................................................uugc.......agacAUGGAA..c-AUAAAGGAGACCU. ACAGUACAUCAAGAGU.UG.UUC........aUUAA....................................uGAAC.A.CGGCA.ACC.U..GGG......AUUGAC.....................aCCCA..AGGUGCCAcuag................ccgA.---aggg................uuaGGAUGGGGUUUag.........ccGAAA.......................................................................g............cuAAGCAA..aAAAGUGUGAGAAAAu GUGCUGCAUUAAGAGU.UG.GGA.........---A.....................................UUCC.A.UGCCA.ACC.U..GCUuu..uc----A-aa.............ugga.aaGGUA..AGGUGGACggu.................ugaA.---aa...................acCGAUGUGGCUC.............ACCA......................................................................................GAGCAA..uCCAAACCCGCUUGAu GCGCUGCAUUAAGAGU.UG.GGA.........---A.....................................UUCC.A.UGCCA.ACC.U..GCUuu..uc--A---a..............aaggaaaAGUA..AGGUGGACggu..................ugA.A--aa...................gcCGAUGUGGCUC.............ACCA......................................................................................GAGCAA..uCCAAACCCGCUUGAu