Rfam: Seed sequence alignment for RF01725

URS0000AB60DD_12908/1-96 unclassified sequences 0.0 URS0000D669B4_384765/1-123 Labrenzia aggregata IAM 12614 0.0 URS0000D66502_12908/1-103 unclassified sequences 0.0 URS0000AB5324_12908/1-105 unclassified sequences 0.0 URS0000AB949E_12908/1-103 unclassified sequences 0.0 URS0000AB7E23_12908/1-100 unclassified sequences 0.0 URS0000ABC32A_12908/1-106 unclassified sequences 0.0 URS0000AB389A_12908/1-105 unclassified sequences 0.0 URS0000ABB2C1_12908/1-105 unclassified sequences 0.0 URS0000AB4E0E_349163/1-110 Acidiphilium cryptum JF-5 0.0 URS0000ABBBAA_392499/1-108 Sphingomonas wittichii RW1 0.0 URS0000ABB61C_12908/1-106 unclassified sequences 0.0 URS0000AB92B4_12908/1-103 unclassified sequences 0.0 URS0000ABD77B_12908/1-102 unclassified sequences 0.0 URS0000AB3FDB_12908/1-103 unclassified sequences 0.0 URS0000AB4B89_12908/1-103 unclassified sequences 0.0 URS0000ABCFAE_12908/1-103 unclassified sequences 0.0 URS0000ABCC4C_12908/1-103 unclassified sequences 0.0 URS0000ABBE5B_12908/1-96 unclassified sequences 0.0 URS0000AB483F_365044/1-110 Polaromonas naphthalenivorans CJ2 0.0 URS0000AB5660_12908/1-94 unclassified sequences 0.0 URS0000AB30B5_12908/1-96 unclassified sequences 0.0 URS0000AB9CE1_12908/1-98 unclassified sequences 0.0 URS0000AB42CB_12908/1-93 unclassified sequences 0.0 URS0000AB33E3_12908/1-93 unclassified sequences 0.0 URS0000AB6E63_12908/1-93 unclassified sequences 0.0 URS0000AB2449_12908/1-93 unclassified sequences 0.0 URS0000AB46D4_12908/1-93 unclassified sequences 0.0 URS0000AB36D4_12908/1-93 unclassified sequences 0.0 URS0000D6A32C_313595/1-93 Psychroflexus torquis ATCC 700755 0.0

CACCAGCAUCAAGAG-.AG.GGC.........GUAA.....................................GCCC.-.CGCCA.ACC.A..GCC.....cUGACC-.....................gGGCA.aCGGUGGUC.......................-uAAG.......................-GAUGCGGCU-.............CGUU......................................................................................-GCCAA...-UAAUACGGUCGUCu CGCCAUCAUCAAGAGA.AG.GGC.........UGGC.....................................GCCC.U.CGCCA.ACC.U..GCC......GUCCG-......................GGCA..AGGUGGUUucc..................gcA.---ac...................agGGAUGCGGCCGgucag...acccu----.......................................................................cuaccga.gguuuucCGGCAA...-CGAAGCGGUUAAU. CCCAAGCAUCAAGAGA.GG.GGC.........CCUC.....................................GCCC.C.CACCA.ACC.U..GCC......CAACCC......................GGCA..AGGUGGUCgu...................ccU.---ucg..................ggAGAUGUGGCCG.............AUC-......................................................................................CGGCAA...C-AAACGGGUGCAG. ACUCAGCAUCAAGAGA.AG.GGC.........CUCG.....................................GCCC.G.CACCA.ACC.U..GCC......AACACC.....................cGGCA..AGGUGGUCgc...................ccG.AA-ag....................gGGAUGCGGCCA.............AAC-......................................................................................CGGCAA...CUAAAGGGCAGGCC. AACCAGCAUCAAGAGC.AG.GGU.........UGAC.....................................GCCC.U.CGCCA.ACC.U..GCC......CUGUCC.....................gGGCA..AGGUGGUUcc....................cG.AA-ag....................gGGAUGCGGCC-.............ACAA......................................................................................-GGCAA...CAAAGCGGGCCCAU. ACGAAGCAUCUUGAGC.AG.GGC.........UGAC.....................................GCCC.U.CGCCA.ACC.U..GCC......AGACCC......................GGCA..AGGUGGUUuc....................cG.AA-ag....................gGGAUGCGGCC-.............--AA......................................................................................-GGCAA...CCAAAGGGUCCAAA. UGUCUGCAUCAAGAGA.AG.GGC.........UGAC.....................................GCCC.U.CGCCA.ACC.U..GCC......CGACCC......................GGCA..AGGUGGCUucc..................cgA.-A-ag...................ggAGAUGCGGCCA.............AGGA......................................................................................CGGCAA...CCAAGGGGUCCAAA. UCCGGACAUCAAGAGU.AG.GGC.........UGAC.....................................GCCC.U.CACCA.ACC.U..GCC......GACCC-......................GGCA..AGGUGGUGuc...................ccA.A--aag..................ggAGAUGUGGCCA.............AGGA......................................................................................CGGCAA...-CUAAGGGGUCCAAc UUCGGACAUCAAGAGU.AG.GGC.........UGAC.....................................GCCC.U.CGCCA.ACC.U..GCC......UACCC-......................GGCA..AGGUGGUGcuc.................cgaA.---ag...................gaGGAUGUGGCCA.............UAGA......................................................................................CGGCAA...-CUAAAGGGUCUAAg CUUCAGCAUCAAGAGU.UG.GGC.........CGAC.....................................GCCC.AgCGCCA.ACC.U..GCU......UCCCG-......................AGCA..AGGUGGCUuucuuc...........cuucggAaG--a......................AGAUGUGGCCG.............GUC-......................................................................................CGGCAA...CUAAACGGGACAAG. AUGCAGCAUCAAGAGU.UG.GGC.........CGGC.....................................GCCCaA.CGCCA.ACC.U..GCC......GAUCCG......................GGCA..AGGUGGCGcu...................ccC.---gcga...............ggggGGAUGUGGCCG.............AUC-......................................................................................CGGCAA...CCAAGCGGACCAAG. AAGAUACAUGAAGAG-.AG.GAC.........UGAC.....................................GUCC.-.CGCCA.ACC.U..GCU......AGAUCC......................GGCA..AGGUGGUUuccuu..............uuuuA.---aaa..................agGCAUGUGACC-.............UUCG......................................................................................-GGUAA...-CAAUGGGGUCCAUg ACGUUGCAUGAAGAG-.AG.GGC.........AGAC.....................................GCCC.-.CGCCA.ACC.U..GCC......UGACAC......................GGCA..AGGUGGUUuccu................ugaA.---aa...................agGCAUGAGACC-.............AUAG......................................................................................-UGUAA...ACACAGUGUCCAUG. AUCACACAUGAAGAG-.AG.GAC.........UGAC.....................................GUCC.-.CGCCA.ACC.U..GCC......CGGACC......................GGCA..AGGUGGUUcc...................ccU.---ccc.................gggGCAUGCGACC-.............AAAG......................................................................................-GGUAA...-CCAAGUGUCCAUGa ACCCAUCAUUAAGAG-.AG.GAC.........UGAC.....................................GUCC.-.CGCCA.ACC.U..GCC......UUUUCC......................GGCA..AGGUGGUAgcc..................uuA.---guu.................aggCGAUGAGACCC.............UU--......................................................................................GGGUAA...-CUAAUGGAUCAUCa ACCACGCAUUAAGAG-.AG.GAC.........UGAU.....................................GUCC.-.CGCCA.ACC.U..GCG......UGUUCC......................AGCA..AGGUGGUUgcc..................uuA.---auu.................aggCGAUGAGACC-.............UAAG......................................................................................-GGUAA...-CCAACGGGUCAUCa AAUGAUCAUUAAGAG-.AG.GAC.........UGAC.....................................GUCC.-.CGCCA.ACC.U..GCC......UUAUCC......................GGUA..AGGUGGUAacc..................ucA.---uau.................gagGGAUGAGACC-.............UAAG......................................................................................-GGUAA...CCAAAGGAUCAUUG. UAUAAUCAUUCAGAG-.AG.GAC.........UGAC.....................................GUCC.-.UGCCA.ACC.U..GCA......UUUUCC......................GGCA..AGGUGGUUacc..................ucA.---uuu.................gagGGAUGAGACC-.............GUAG......................................................................................-GGUAA...CCAAAGGAUCAUUG. AUCUAGCAUCAGGAG-.UG.AGC.........GAAA.....................................GCUC.-.CGCCA.ACC.U..GCC......CUCCCA......................GGCA..AGGUGGCG.......................-.CAG.......................-AAUGUGGCCU.............CAUU.....................................................................................gAGGCAA...UCAACUGGGAUUCA. GUUCAACAUCAGGAGU.UG.GAC........aGUAG....................................uGUCC.A.CGCCA.ACC.U..GCC......UACUCG......................GGCA..AGGUGGUAucg..................cuU.---au...................gcAGAUGGGGCCU............u-UAA.......................................................................a............caAGGUAA...CCAAACGAGUCCCU. ACUGAGCAUCAGGAG-.UG.GGC.........GCAA.....................................GCCC.-.CGCCA.ACC.U..GCU......UACCCA......................AGCA..AGGUGGUU.......................-cGAG.......................-AAUGUGGCC-.............GUAA......................................................................................-GGCAA...CCAAGUGGGUUCUC. UAAGAGCAUCAGGAGU.GG.GAC.........UUG-.....................................UUCC.C.CGCCA.ACC.U..GCU......UACCGA......................AGCA..AGGUGGUU.......................-aGAG.......................-UAUGUGGCCU.............AAA-......................................................................................CGGCAA...CCAAAUCGGACUCU. UUAUUGCAUCGAGAGU.AG.GAC.........GAAA.....................................GUCC.U.CGCCA.ACC.U..GCU......UACCCA......................AGCA..AGGUGGUC.......................-cAAU.......................-AAUGUGGCCC.............UUAC......................................................................................AGGCAA...CCAAAUGGGAAUCC. GAGGAACAUAAAGAG-.AA.GGU.........AAAG.....................................ACCU.-.CGGCA.ACC.U..GGA......AGACUA......................UCCA..AGGUGCUU.......................-.GAA.......................-GAUGUGGCA-.............GAGA......................................................................................-UGCAA...-CUAAGUAGUCAAAa AAUAAGCAUAUAGAG-.AA.GGU.........AAAG.....................................ACCU.-.CAGCA.ACC.U..GGA......AGACUA......................UCCA..AGGUGCUA.......................-.GAA.......................-GAUGUGGCA-.............GAAA......................................................................................-UGCAA...CUAAAUAGUCAGAA. AAUAAGCAUAUAGAGA.AG.GUU.........-U-A.....................................GACC.U.CGGCA.ACC.U..GGA......AGACUA......................UCCA..AGGUGCCU.......................-.GAA.......................-GAUGUGGCA-.............GAAA......................................................................................-UGCAA...-CUAAAUAGUCAAAg UUAAAGCAUAAAGAGA.AG.GUU.........--AA.....................................GACC.U.CGGCA.ACC.U..GGA......UGACUA......................UCCA..AGGUGCCC.......................-.GGA.......................-AAUGUGGCA-.............GUGA......................................................................................-UGCAA...-CUAAAUAGUCAAAa UUGAAACAUACAGAGA.AG.GUU.........--AA.....................................GACC.U.CGGCA.ACC.U..GGA......UGACUA......................UCCA..AGGUGCUA.......................-.GUA.......................-AAUGUGGCA-.............GAAA......................................................................................-UGCAA...-CUAAUUAGUCAAAa UUGAAACAUAUAGAGA.AG.GUU.........--AA.....................................GACC.U.CGGCA.ACC.U..GGA......UGACUA......................UCCA..AGGUGCUC.......................-.GUA.......................-AAUGUGGCA-.............GAAA......................................................................................-UGCAA...-CUAAUUAGUCAAAa UAAUAACAUAAAGAGA.AG.GUU.........--AA.....................................GACC.U.CGGCA.ACC.U..GGA......AGACUA......................UCCA..AGGUGCUU.......................-.GAA.......................-GAUGUGGCA-.............GUAA......................................................................................-UGCAA...CCAAGUAGUCGUAC.