Rfam: Seed sequence alignment for RF01725

URS0000D65C24_12908/1-104 unclassified sequences 0.0 URS0000AB6670_12908/1-126 unclassified sequences 0.0 URS0000D69CEB_12908/1-122 unclassified sequences 0.0 URS0000D68773_12908/1-121 unclassified sequences 0.0 URS0000D67E95_12908/1-119 unclassified sequences 0.0 URS0000D664B1_204669/1-127 Candidatus Koribacter versatilis Ellin345 0.0 URS0000D690D1_12908/1-144 unclassified sequences 0.0 URS0000D68715_12908/1-142 unclassified sequences 0.0 URS0000D678C3_313628/1-103 Lentisphaera araneosa HTCC2155 0.0 URS0000D6AE56_12908/1-128 unclassified sequences 0.0 URS0000D65C57_12908/1-143 unclassified sequences 0.0 URS0000D67BE7_281689/1-136 Desulfuromonas acetoxidans DSM 684 0.0 URS0000D6CE38_12908/1-105 unclassified sequences 0.0 URS0000D6C155_12908/1-123 unclassified sequences 0.0 URS0000D67805_12908/1-122 unclassified sequences 0.0 URS0000D695A1_12908/1-122 unclassified sequences 0.0 URS0000D680C4_12908/1-128 unclassified sequences 0.0 URS0000D67EB0_12908/1-116 unclassified sequences 0.0 URS0000D6C09B_12908/1-111 unclassified sequences 0.0 URS0000D697EF_216432/1-98 Croceibacter atlanticus HTCC2559 0.0 URS0000D6A733_12908/1-98 unclassified sequences 0.0 URS0000D698A2_12908/1-141 unclassified sequences 0.0 URS0000D66536_12908/1-117 unclassified sequences 0.0 URS0000D688A3_12908/1-117 unclassified sequences 0.0 URS0000D69188_12908/1-116 unclassified sequences 0.0 URS0000D657B3_12908/1-140 unclassified sequences 0.0 URS0000D66E41_12908/1-121 unclassified sequences 0.0 URS0000D693D8_12908/1-127 unclassified sequences 0.0 URS0000D6CEB5_246197/1-125 Myxococcus xanthus DK 1622 0.0 URS0000D697D0_12908/1-96 unclassified sequences 0.0

-----GCCCA----G-.-G.CAC.........----uccaggcacggguguacccgcaaccggg.........GUGC.-.CCGCA.ACC.G..GUG......UACC--......................CGCAacCGGGGUGCcc....................gCaA--c......................UGGGGUGCCCG.............CAAC.......................................................................u.............g-GGGCA...UCA-----------. GGGCGUCAUCAAGAAG.UG.CCGugc...cuc----............................guc..ggccCGGC.A.UGCCA.ACC.U..GAU......CCGAAG......................UUCA..AGGUGGUUucucug............gccuuC.---cag..................agAGAUGCGCGUCgg.........aa----.......................................................................ga..........accGACGAA...-CAAACCUUCGACUc UAGAGGUAUGAGGAUU.GC.CUCac....uaa----............................ccccaagguGAGG.C.UGCCA.ACC.G..AGC......ACAU--......................GCCA..CGGUGGCCga...................auC.---uuaaug............agauuCCAUACGUUGG.............AUUA.....................................................................................aCCAGAA..aAAGGAGCCCUGUGCu UAGAGGUAUGAGGAUU.GC.CUCgcu...aac----............................ccga.agguGAGG.C.UGCCA.ACC.G..AGC......ACGU--......................GCCA..CGGUGGCCga...................auC.---uuaaug............agauuCCAUAUGUUGG.............AUUA.....................................................................................aCCAAAA...AAAGGAGCCCUAUGc UAAAGGUAUGAGGAUU.GC.CUCac....uaa----............................ccccaagguGAGG.C.UGCCA.ACC.G..AGC......ACGU--......................GCCA..CGGUGGCCga...................auC.---uuaaug............agauuCCAUAUGUUGG.............AUUA.....................................................................................aCCAAAA...A-AGGAGCCCUAUG. UUCCAGCAUCAGGAGU.GU.CCUggc..cgcuUUA-............................ag.....ccAGGU.C.CGGCA.ACC.G..AGCu....uUGGAG-.................a...cGCUA..CGGUGCCAcgag................ucgC.---aag.................acuCAAUGUGCGGA............cGAAA.....................................................................................gUCCGAAa.gGAUGUCUCCCGACAg UACCAGCAUCAAGAAC.GU.CCUgc....cgu-AA-............................aa....ugcAGGG.C.UGCCA.ACC.G..AGG......AGGAGA.....................aCCCA..CGGUGGCUuggugc...........gggagaG.---cgagucuc.......ucccgugcCAAUGCGCUGGucg.......auc----.......................................................................gga........ucgaCCGGAA..aGCAAAUCUCCCUUGg CUUUGGCAUCCAGAGU.CC.CACgcgaccucu----............................uga...agcGUGG.G.CGGCA.ACC.G..GGU.....c-AAGCG.................c...gAUCA..CGGUGCCGagg.................ucaG.---cccuuc............uggggUGAUGCGGCA-.............----cgcaaggcca...................................................ugccuugugc...............-AGCAA..cAUCAGCGCUCGUUGa AAGGUACAUCAAGAC-.-G.AUC.........GAGA.....................................GAUC.-.GAGCA.ACC.G..GGG......UCAGU-......................CCCA..CGGUGCUAagc..................gaA.---guu.................cgcAGAUGUGCAGA.............UUUA.....................................................................................aUCUGAA...AAAAUACUGGAGA-. CACCAGCAUCAGGAGC.GA.CCC.........AUUA.....................................GGGU.C.CGGCA.ACC.U..AGCa...ac---GGA.................ga.uaGCUA..AGGUGCCUugaga..............gugaA.---caauc.............auucuCGAUGUGCGGGuu........cca----.......................................................................guu.........gagCCCGAA..aCAGAAACUCCGACGg CCCCGACAUCCGGAGA.GA.CCCgu....cgcU---............................ugc...ggcGGGU.C.CGGCA.ACC.U..GGG......GGAGCA.....................uCCCG..AGGUGCCAucuucgc.........cgaggcgU.---gcucgg...........cgguagAGAUGUGGCGGagg.......gcc----.......................................................................ucgcg.....gcccuGCGCAA...CGAAGUGCUCCGCG. ACCAUGCAUUAAGAGA.GG.CGUggcg.gcau----............................gag..ccaaGCGC.C.CGGCA.ACC.U..G--......-ACAAC......................--CA..AGGUGCCAgcauguu.........uugugaaC.---acgguguuu.....gcaaaacagCGAUGCGCCCC.............GUAA......................................................................................GGGGAA..aGUUGACCUACCGUAc GAUGAGCAUCAAGAGC.GUcGUCg......gg--A-u..........................ggu....cccGACA.C.CACCA.ACC.G..GU-......-CCUC-......................--CAucCGGUGGUUcc....................cA.---ucu.................uggGGAUGCGGCCC.............UUA-......................................................................................GGGCAA...AGGAGGCCAU----. AUUUUGUAUGUAGAGU.GC.CUC........uCGAU....................................aGAGG.C.CACCAgACC.G..AGCa...ac---U--ccaa.........acagu...aGCCA..CGGUGGUUag....................aA.---ucgca.............agauuCCAUACGUAGG............a-GAC.......................................................................a.............aCCUAAA..aAAUGGAGGUGCCCA. AUCCUGUAUGUAGAGU.GC.CUC........uCGAU....................................aGGGG.C.CACCAaACC.G..AGCaa..cu----C-ca.............caag.uaGCCA..CGGUGGUUag....................aA.---ucgca.............agauuCCAUAUGUAGG............a-GAC.......................................................................a.............aCCUAAA..aAAUGGAGGUGCCCG. AUCCUGUAUGUAGAGU.GC.CUC........uCGAU....................................aGGGG.C.CACCAgACC.G..AGCaa..cu----C-ca.............caag.uaGCCA..CGGUGGUUag....................aA.---ucgca.............agauuCCAUACGUAGG............a-GAC.......................................................................a.............aCCUAAA..aAAUGGAGGUGCCCC. CAGACGCAUUACGAG-.CA.GGAcg....ggcG---a.........................aagc....cgaACCU.G.CACCA.ACC.G..AGC.....c-CCCAA.................g...gGCCG..CGGUGGUUaucgg..............agccG.---aaagg.............cgccgAGAUGAGAGCC.............GAAA......................................................................................GGCUAA..aAACACAGUCCCUCGu UACAUGCAUCAAGA--.CG.G-C.........AAUA.....................................GUC-.-.CAGCA.ACC.G..AGC.....cCACCC-.................g...gGUCA..CGGUGCUA.......................-aAAA.......................-GAUGUGGUCUcucgg..agacaa----.......................................................................aaauac...ucggugAGACAA..aAAUCUGAAUCUUGGu UUCAAUCAUCCCGAGC.GA.UUCggu..ccca-C--............................aag...cccGAAU.C.CACCA.ACC.U..GUC......CAAGGC.....................gGAUA..AGGUGGUU.......................CuCAU.......................-GAUGAGCCCG.............UUC-......................................................................................UGGGAA..gCCGUCCACGCACGGc CUUAAUUAUCAAGAA-.-U.CUC.........AAAG....................................aGAGA.-.UAGCA.ACC.U..GCA......AUAACG......................AGCA..AGGUGCUA.......................-aAAU.......................AGAUAAGCCAA............a-UUC.......................................................................a.............aUUGGAA...AAAAUGUUAAUUC-. AUAAAUUAUCAAGAA-.-U.CUCa.......aUAA-............................a......agGAGA.-.UAGCA.ACC.U..GCA......AUAACA......................AGCA..AGGUGCUA.......................-aAUA.......................-GAUAAGCCAA.............GUAA......................................................................................UUGGAA...-CAAAUGUUAAAUC. UCCAAGCAUCAGGAGU.GG.CCUu......gcGAAA............................g......cgGGGU.C.CGGCA.ACC.U..GGU.....uUGGAG-.................a...aGCCA..AGGUGCCUuggaugc.........ugugacaG.---aauucuguu......acggugacCGAUGUGCGAAu..........gu-UU-.......................................................................a............caUUCGAA..cAGAAUUUCUCUCGGg CGACGACAUCAAGAGC.GA.CCC.........UCAC.....................................GGGU.C.CGGCA.ACC.G..GGA......UCG---......................-CCAcuCGGUGCCAucc..................cgC.---cucgc.............ggcggGGAUGUGGUCCcg.........ca----.......................................................................cuc.........gcgGGACAA..gGAGGUGACAUGGCGc CGACGACAUCACGAGC.GA.CCC.........UCAC.....................................GGGU.C.CGGCA.ACC.G..GGA......UCG---......................-CCAcuCGGUGCCAuc...................ucG.---ccgcga............ggcggGGAUGUGGUCCcg.........cg-A--.......................................................................cg..........gcgGGACAA..gGAGGUGACAUGGCGc CGACGACAUCAGGAGC.GA.CCC.........UCAC.....................................GGGU.C.CGGCA.ACC.G..GGA......UCG---......................-CCAcuCGGUGCCUuccg................ccuC.---acgg................cggAGAUGUGGUCCcg.........cg-A--.......................................................................gc..........gcgGGACAA..gGAGGUGACAUGGCGc CCCCAGCAUCAGGAAC.GA.CCGcucg.cacc----............................aaa..cgagCGGU.C.GGCCA.ACC.U..GGC......CCGGAA.....................gGCCA..AGGUGGUUuccu...............cggaC.---gguguuc.........guccgggGGAUGCGCGCGgg........gca----.......................................................................ggag.......cccuGGCGAA...CGAAGCUUCCGGCGc GAAUUGCAUUUAGAGC.GG.UCGgag..ucgu----............................agug.cucuUGGC.C.CGGCA.ACC.U..GGG......UUCGCC......................CCCA..AGGUGCUUgc....................aC.---acga...............ugugCGAUGCGGUCG.............GAUA.......................................................................c.............cCGGCAA...ACCGGCGCCGAUUCg CGAAGACAUCCCGAGU.GG.CCUcgu...cug----............................gug...acgAGGC.G.CAGCA.ACC.U..GCC......AACGAC.....................cGGCA..AGGUGCUUgug.................cgcA.---gcgg................cgcAGAUGUGGCCAcg........caa----.......................................................................ggu........ugcgAGGCAA...CGAACAGUCGCCCCg GCGCAGCAUCAAGAGC.GG.CCGccg...ccu----............................cgc..gcggUGGC.C.CGACA.ACC.U..GGA.....gUCGGAC.....................cUCCA..AGGUGUCC.......................-aAAC.......................-GAUGCGGUUCgag......gagc----.......................................................................agggg....cuccccGAGCAA..uCCAAGCGUCCGAAGc AUCUUGCAUCCCGAA-.-C.CCU.........UUAG.....................................UGGG.-.UGCCA.ACC.G..AGC......AGAGAA......................GCCA..CGGUGGCA.......................-aAAC.......................-GAUGCGGGCA.............UUA-......................................................................................UGCCAA..aACAUAUUCCGAGACa