Rfam: Seed sequence alignment for RF01725

URS0000D6CA75_122586/1-112 Neisseria meningitidis MC58 0.0 URS0000D6BD11_242231/1-112 Neisseria gonorrhoeae FA 1090 0.0 URS0000D6676F_12908/1-115 unclassified sequences 0.0 URS0000D6C7B3_12908/1-126 unclassified sequences 0.0 URS0000D6617C_12908/1-119 unclassified sequences 0.0 URS0000D6CF4F_12908/1-118 unclassified sequences 0.0 URS0000D6809E_12908/1-110 unclassified sequences 0.0 URS0000D66A44_12908/1-110 unclassified sequences 0.0 URS0000D658A9_12908/1-108 unclassified sequences 0.0 URS0000D6A30C_12908/1-126 unclassified sequences 0.0 URS0000D67607_12908/1-130 unclassified sequences 0.0 URS0000D69909_12908/1-114 unclassified sequences 0.0 URS0000D65FDF_12908/1-111 unclassified sequences 0.0 URS0000D6831E_12908/1-117 unclassified sequences 0.0 URS0000D66A99_12908/1-117 unclassified sequences 0.0 URS0000D693CA_12908/1-116 unclassified sequences 0.0 URS0000D69757_12908/1-117 unclassified sequences 0.0 URS0000D6BB90_12908/1-117 unclassified sequences 0.0 URS0000D6767B_12908/1-117 unclassified sequences 0.0 URS0000D6C87E_12908/1-112 unclassified sequences 0.0 URS0000D6C0F9_12908/1-117 unclassified sequences 0.0 URS0000D6B341_12908/1-117 unclassified sequences 0.0 URS0000D68104_12908/1-116 unclassified sequences 0.0 URS0000D6A0D7_12908/1-116 unclassified sequences 0.0 URS0000D6BD43_12908/1-126 unclassified sequences 0.0 URS0000D68307_12908/1-126 unclassified sequences 0.0 URS0000D6A7A6_12908/1-125 unclassified sequences 0.0 URS0000D67FDD_12908/1-125 unclassified sequences 0.0 URS0000D69AA0_12908/1-125 unclassified sequences 0.0 URS0000D6BE91_12908/1-126 unclassified sequences 0.0

GUGCUGCAUUAAGAGU.UG.GGA.........---A.....................................UUCC.A.UGCCA.ACC.U..GCUuu..uc--A---a..............aaggaaaAGUA..AGGUGGACggu..................ugA.A--aa...................gcCGAUGUGGCUC.............ACCA......................................................................................GAGCAA..uCCAAACCCGCUUGAu GCGCUGCAUUAAGAGU.UG.GGA.........---A.....................................UUCC.A.UGCCA.ACC.U..GCUu...uu---C--aa............acgga.aaGGUA..AGGUGGACggu.................ugaA.---aa...................acCGAUGUGGCUC.............GCCG......................................................................................GAGCAA..uCCAAACCCGCUUGAu AUCAAACAUCAGGAGU.GA.UCUg.......cAGGA............................g.......cAGAU.C.CGCCA.ACC.G..AGC......CGAGAG......................GCCA..CGGUAGUUuga.................uccA.---ugaa...............ugguAGAUGUGCCC-.............GCAA......................................................................................-GGGAAa.uCAAAGGCCGCCUGAu CCCUCACAUCACGAGU.GG.CUCg.......gUUUU............................c.......cGGGC.U.CGGCA.ACC.U..GGG.....gCGAACA......................CCCA..AGGUGCCAac...................ccA.---ccuuu.............gguggGGAUGCGGCUUcc........acc----.......................................................................uucc......gguguCGGCAA..cAACCAGUUCGAGGA. UCACAACAUCACGAGA.GG.CCCg.......g-UUC............................g......ccGGGU.C.CGGCA.ACC.U..GGG......ACGGAC.....................aCCCA..AGGUGCUCauc..................caC.---cggaga...........cgguggGGAUGUGGCCC.............GAGA......................................................................................GGGCAA...CGAAGUGUCCGCCGg GAAGUACAUCAAGAGA.GG.CUC........aAAU-............................u.......uGGGU.C.CGGCA.ACC.U..GGG......AUGGAC.....................aCCCA..AGGUGCUCgcuu...............gccuA.---guag...............gugaGGAUGCGGUUU............cGGAA.....................................................................................gAAACAA...UGAAGUGUCCGGCGg AAGGAACAUUAAGAGA.GG.UCC........aAUAA....................................uGGAC.C.CGGCA.ACC.U..AGG......ACGGAC.....................aCCCA..AGGUGCUUcc...................caG.---aaa.................uggGGAUGUGGUAC.............GAAA......................................................................................GUACAA...GUAAUUGUCCACACg AAGGAACAUUAAGAGA.GG.UCC........aAUAU....................................uGGGC.C.CGGCA.ACC.U..AGG......ACGGAC.....................aCCCA..AGGUGCUUcc...................caG.---aaa.................uggGGAUGUGGUAC.............GAAA......................................................................................GUACAA...GUAAUUGUCCACACg UAACAACAUUAAGAGA.GG.UCA.........UUAG.....................................UGGC.C.CGGCA.ACC.U..AGG......AUGGAC.....................aCCCA..AGGUGCUUcc...................caG.---aaa.................uggGGAUGUGGUAC.............GAAA......................................................................................GUACAA...GUAAUUGUCCCAACg AGUUAAUAUCAAGAGC.AG.UUCa......uaUU--............................u......aaGAAC.U.CACCA.ACC.G.g---......------gcucagaucaaucagag.....---AauCGGUGGUAuua.................gccU.---uaau...............cgcuAGAUGUGCCCA............gGAAA.....................................................................................aUGGGAA..aUGUAAAGCCGCAAUu CAGCAACAUCAGGAGU.GC.UCUga....gau----............................uag..uuucAGAG.U.CGCCA.ACC.G..AGCcgagauA-----a...............auu.gaGGCA.aCGGUGGUUuga.................uccA.---uaaa...............cgguAGAUGUGCCCA............gGAAA.....................................................................................aUGGGAA..uAAGAAUAAACCGCCu CAAAAUCAUCAGGAGC.GA.UUUc.......cAGAU............................g.......gAAAU.C.CACCA.ACC.G..GCC......CAAUUG......................GGAA..CGGUGGUUaggu................caaA.---uaau................gacAGAUGUGCCC-.............UUUA......................................................................................-GGGAAa.cUCUGAACCGCCUGA. UUUAUACAUCAGGAA-.GG.UCU.........AUA-....................................u-GAC.C.UGCCA.ACC.G..ACU.....cUGGGU-.....................gAGCA..CGGUGGUUuga.................aucC.---uuaaa..............cgguAGAUGUGCCUU.............GAAA......................................................................................AAGGAA...ACCUAGAAGCCACCu UUAUCUCAUCAUGAGC.GG.UUUc.......uCUC-............................a.......cAAAC.C.CGCCA.ACC.G..AGC......CUAAAA......................GCCA..CGGUGGUCaguucc...........gcuaaaA.---gg...................aaUGAUGUGCCUU.............UUAU......................................................................................UAGGAA..aAAGUGGAACCGCCUg UUACAUCAUCAGGAGC.GA.UUU........cUUAC............................g......agAAAU.C.CACCA.ACC.G..AGC......UUAAAA......................GCUA..CGGUGGUUaguuc..............cauuA.---aac.................ggaAGAUGUGCCUU.............GAAA......................................................................................AAGGAA..aAAGUGGAACCGCCUg UGAUAACAUCAGGAGA.GA.UUUc.......u-AAG............................u......agAAAU.C.CACCA.ACC.G..AGC......UAAAA-......................GCUA..CGGUGGUUaguu...............ccauU.---aaac................ggaGGAUGUGCCUU.............GAAA......................................................................................AAGGAA..aAAGUGGAACCGCCUg AAUUAUCAUCAGGAGU.GA.UCUu......ua---A............................gu.....aaAGAU.C.CACCA.ACC.G..AGC......CUAAAA......................GCUA..CGGUGGUUaguu...............ccauU.---aaac................ggaGGAUGUGCCUU.............GAAA......................................................................................AAGGAA..aAAGUGGAACCGCCUg UGUCAUCAUCAGGAGU.GA.UCUu......ua---A............................gu.....aaAGAU.C.CACCA.ACC.G..AGC......CUAAAA......................GCUA..CGGUGGUUaguu...............ccauU.---aaac................ggaGGAUGUGCCUU.............GAAG......................................................................................AAGGAA..aAAGUGGAACCGCCUg UGACAGCAUCAGGAGA.GA.UUUc.......u-AAA............................a......agAAAU.C.CACCA.ACC.G..AGC......UUAAAA......................GCUA..CGGUGGUUaguuc..............cauuA.---aac.................ggaAGAUGUGCCUC.............AAUA......................................................................................GAGGAA..aAAUGGAACCGCCUGa -----UCAUCAGGAGA.GG.UUU........cUUAC............................u......ugAAAC.C.CACCA.ACC.G..AAC......UUAAAA......................GUUA..CGGUGGUUaguu................ccaU.---uaaa...............cgggAGAUGUGCCUU.............GAAA......................................................................................AAGGAA..aAAUAGAACCGCCUGa GUGUAACAUCAGGAGC.GG.UUUc.......u-AAG............................u......agAAAC.C.CACCA.ACC.G..AGC......CUCAAA......................GCUA..CGGUGGUCaguuc..............cauuA.---aac.................ggaAGAUGUGCCUU.............GAAA......................................................................................GAGGAA..aAAUGGAACCGCCUGa AUGUAUCAUCAGGAGC.GG.UUUc......agGAA-............................a.......gAAAC.C.CACCA.ACC.G..AGC......CUCAAA......................GCUA..CGGUGGUUaguu................ccaU.---uaaa...............cgggAGAUGUGCCUU.............GAAA......................................................................................AAGGAA..aAAUGGAGCCGCCUGa GUCAAUCAUCAGGAGA.GA.UUAc......aaUAA-............................a.......gUAAU.C.CACCA.ACC.G..ACC......CAAAAG......................GGCA..CGGUGGUUuga.................uccU.---uaaa...............cgguAGAUGUGCCUC.............AGAA......................................................................................GAGGAA..uCUUAAAGCCGCCUGa UUAUAACAUCAGGAGC.GG.UUUc.......a-UAG............................c......agAAAC.C.CGCCA.ACC.G..ACC......CAUGUG......................GGCA..CGGUGGUUuga.................uccU.---uaaa...............cgguAGAUGUGCCUC.............ACAA......................................................................................GAGGAA..uCUUAAAGCCGCCUGa AUAGUACAUCAGGAGU.GG.UUUc......ag-UAU............................u.......gAAAC.C.CGCCA.ACC.G..AACccagauA-----a..............auca.agGUUA..CGGUGGUUuga.................uccU.---uaaa...............cgguAGAUGUGCCCA.............GGAA.......................................................................g.............aUGGGAA..aCAUGAUUAGCCGCCu AGAUUACAUCAGGAGU.GG.UCUc......agUAA-............................u.......gAAAC.C.CACCA.ACC.G..AACccagauA-----a..............aucg.agGUUA..CGGUGGUUuga.................uccU.---uaaa...............cgguAGAUGUGCCCA.............GGAA.......................................................................g.............aUGGGAA..aCAUGAUUAGCCGCCu GAUUAACAUCAGGAGU.GG.UUU........cUAAU............................u.......gAAAC.C.CACCA.ACC.G..AGCaaagauA-----aa.............uca..auGUUA..CGGUGGUUuga.................uccU.---uaaa...............cgguAGAUGUGCCCA............gGAAA.....................................................................................aUGGGAA..aCAUGAUUAGCCGCCu AUAAAGCAUCAGGAGC.GG.UUUc.......a-AGU............................u.......gAAAC.C.CGCCA.ACC.G..AACuuagaaA-----aa.............uca..aaGUUA..CGGUGGUUuga.................uccU.---uaaa...............cgguAGAUGUGCCUA............gGAAA.....................................................................................aUAGGAA..aCAUGAUUAGCCGCCu UUUUAUCAUCAGGAGU.GG.UUU........cAUAA............................u.......gAAAC.C.CGCCA.ACC.G..AGCuuagaaA-----aa.............uca..aaGUUA..CGGUGGUUuga.................uccU.---uaaa...............cgguAGAUGUGCCUA............gGAAA.....................................................................................aUAGGAA..aCAUGAUUAGCCGCCu AAACAUCAUCAGGAGU.GG.UUUc.......a-UAG............................u......ugAAAC.C.CGCCA.ACC.GagCC-ca.gauA-----a...............au..caGGGAagCGGUGGUUagag................ccuU.---aaac................gcuAGAUGUGCCUA............gGAAA.....................................................................................aUAGGAA..aCACAAAGCCGCCUGa