# Species tree for RF03058 # Generated from Rfam version 14.10 | +--Eukaryota (3) | | | +--Metazoa (1) | | | | | +--Nematoda (1) | | | | | +--Chromadorea (1) | | | | | +--Rhabditida (1) | | | | | +--Panagrolaimoidea (1) | | | | | +--Strongyloididae (1) | | | | | +--Parastrongyloides trichosuri (1) | | | +--Viridiplantae (2) | | | +--Streptophyta (2) | | | +--Embryophyta (2) | | | +--Tracheophyta (2) | | | +--Spermatophyta (2) | | | +--Magnoliophyta (2) | | | +--eudicotyledons (2) | | | +--coreeudicotyledons (2) | | | +--rosids (2) | | | +--fabids (1) | | | | | +--Malpighiales (1) | | | | | +--Euphorbiaceae (1) | | | | | +--Acalyphoideae (1) | | | | | +--Acalypheae (1) | | | | | +--Ricinus communis (castor bean) (1) | | | +--malvids (1) | | | +--Malvales (1) | | | +--Malvaceae (1) | | | +--Malvoideae (1) | | | +--Gossypium hirsutum (upland cotton) (1) | +--Bacteria (330) | | | +--Cyanobacteria (1) | | | | | +--Nostocales (1) | | | | | +--Nostocaceae (1) | | | | | +--Aphanizomenon ovalisporum (1) | | | +--Proteobacteria (329) | | | +--Alphaproteobacteria (318) | | | | | +--Polymorphum gilvum SL003B-26A1 (1) | | | | | +--Rhizobiales (137) | | | | | | | +--Bartonellaceae (1) | | | | | | | | | +--Bartonella (1) | | | | | | | | | +--Bartonella tamiae Th239 (1) | | | | | | | +--Brucellaceae (4) | | | | | | | | | +--Ochrobactrum (1) | | | | | | | | | | | +--Ochrobactrum intermedium 229E (1) | | | | | | | | | +--Ochrobactrum pseudogrignonense (1) | | | | | | | | | +--Ochrobactrum sp. P6BS-III (1) | | | | | | | | | +--Ochrobactrum intermedium LMG 3301 (1) | | | | | | | +--Aurantimonadaceae (18) | | | | | | | | | +--Aurantimonas manganoxydans SI85-9A1 (2) | | | | | | | | | +--Martelella sp. AD-3 (1) | | | | | | | | | +--Aurantimonas sp. USBA 369 (1) | | | | | | | | | +--Aurantimonas ureilytica (2) | | | | | | | | | +--Aurantimonas altamirensis (1) | | | | | | | | | +--Aureimonas sp. Leaf454 (2) | | | | | | | | | +--Aurantimonas sp. Leaf443 (1) | | | | | | | | | +--Martelella endophytica (1) | | | | | | | | | +--Aureimonas sp. Leaf324 (1) | | | | | | | | | +--Aurantimonas sp. 22II-16-19i (1) | | | | | | | | | +--Aureimonas sp. AU20 (1) | | | | | | | | | +--Aureimonas sp. Leaf460 (1) | | | | | | | | | +--Fulvimarina pelagi HTCC2506 (2) | | | | | | | | | +--Martelella (1) | | | | | | | | | +--Martelella mediterranea DSM 17316 (1) | | | | | | | +--Phyllobacteriaceae (11) | | | | | | | | | +--Nitratireductor (2) | | | | | | | | | | | +--Nitratireductor aquibiodomus RA22 (1) | | | | | | | | | | | +--Nitratireductor indicus C115 (1) | | | | | | | | | +--Nitratireductor basaltis (1) | | | | | | | | | +--Mesorhizobium sp. ORS3428 (1) | | | | | | | | | +--Nitratireductor sp. Pht-3B (1) | | | | | | | | | +--Mesorhizobium sp. B7 (1) | | | | | | | | | +--Paramesorhizobium deserti (1) | | | | | | | | | +--Mesorhizobium (1) | | | | | | | | | | | +--Mesorhizobium alhagi CCNWXJ12-2 (1) | | | | | | | | | +--Aquamicrobium defluvii (1) | | | | | | | | | +--Chelativorans sp. BNC1 (2) | | | | | | | +--unclassifiedRhizobiales (3) | | | | | | | | | +--Methyloligella halotolerans (1) | | | | | | | | | +--Methylobrevis pamukkalensis (2) | | | | | | | +--Hyphomicrobiaceae (17) | | | | | | | | | +--Devosia chinhatensis (1) | | | | | | | | | +--Devosia sp. Root436 (1) | | | | | | | | | +--Devosia sp. H5989 (1) | | | | | | | | | +--Pelagibacterium halotolerans B2 (1) | | | | | | | | | +--Prosthecomicrobium enhydrum (1) | | | | | | | | | +--Devosia sp. Cr7-05 (2) | | | | | | | | | +--Devosia soli (1) | | | | | | | | | +--Devosia geojensis (1) | | | | | | | | | +--Devosia sp. LC5 (1) | | | | | | | | | +--Devosia sp. S37 (1) | | | | | | | | | +--Devosia (2) | | | | | | | | | | | +--Devosia limi DSM 17137 (2) | | | | | | | | | +--Pelagibacterium sp. SCN 63-126 (1) | | | | | | | | | +--Pelagibacterium sp. SCN 64-44 (1) | | | | | | | | | +--Pelagibacterium sp. SCN 63-23 (2) | | | | | | | +--Rhizobiaceae (51) | | | | | | | | | +--Kaistia (1) | | | | | | | | | | | +--Kaistia soli DSM 19436 (1) | | | | | | | | | +--Shinella sp. HZN7 (1) | | | | | | | | | +--Kaistia sp. SCN 65-12 (1) | | | | | | | | | +--Shinella sp. DD12 (1) | | | | | | | | | +--Rhizobium/Agrobacteriumgroup (40) | | | | | | | | | | | +--Rhizobium sp. Leaf306 (1) | | | | | | | | | | | +--Rhizobium sp. Root482 (1) | | | | | | | | | | | +--Agrobacterium radiobacter K84 (2) | | | | | | | | | | | +--Rhizobium sp. CCNWSX0483 (1) | | | | | | | | | | | +--Rhizobium sp. RU36D (1) | | | | | | | | | | | +--Rhizobium sp. Root149 (1) | | | | | | | | | | | +--Rhizobium sp. YS-1r (1) | | | | | | | | | | | +--Rhizobium sp. NT-26 (1) | | | | | | | | | | | +--Rhizobium oryzae (1) | | | | | | | | | | | +--Rhizobium sp. Leaf453 (1) | | | | | | | | | | | +--Rhizobium rhizosphaerae (1) | | | | | | | | | | | +--Agrobacterium sp. DSM 25559 (1) | | | | | | | | | | | +--Rhizobium oryziradicis (1) | | | | | | | | | | | +--Rhizobium sp. AC27/96 (1) | | | | | | | | | | | +--Rhizobium sp. Leaf371 (1) | | | | | | | | | | | +--Pseudorhizobium pelagicum (1) | | | | | | | | | | | +--Rhizobium leguminosarum bv. trifolii WSM1325 (1) | | | | | | | | | | | +--Agrobacterium vitis S4 (4) | | | | | | | | | | | +--Rhizobium sp. Root708 (1) | | | | | | | | | | | +--Agrobacterium (5) | | | | | | | | | | | | | +--Agrobacterium albertimagni AOL15 (5) | | | | | | | | | | | +--Rhizobium sp. 58 (1) | | | | | | | | | | | +--Pararhizobium polonicum (1) | | | | | | | | | | | +--Rhizobium sp. Root564 (1) | | | | | | | | | | | +--Rhizobium leguminosarum bv. viciae 3841 (1) | | | | | | | | | | | +--Agrobacterium tumefaciens str. C58 (2) | | | | | | | | | | | +--Rhizobium sp. LC145 (3) | | | | | | | | | | | +--Rhizobium sp. Root483D2 (1) | | | | | | | | | | | +--Rhizobium leguminosarum bv. trifolii WSM2304 (1) | | | | | | | | | | | +--Rhizobium sp. PDO1-076 (1) | | | | | | | | | +--Sinorhizobium/Ensifergroup (7) | | | | | | | | | +--Ensifer (1) | | | | | | | | | | | +--Ensifer adhaerens OV14 (1) | | | | | | | | | +--Ensifer sp. LCM 4579 (1) | | | | | | | | | +--Sinorhizobium medicae WSM419 (1) | | | | | | | | | +--Sinorhizobium meliloti 1021 (2) | | | | | | | | | +--Sinorhizobium fredii GR64 (1) | | | | | | | | | +--Ensifer sp. YIC4027 (1) | | | | | | | +--Xanthobacteraceae (2) | | | | | | | | | +--Starkeya novella DSM 506 (1) | | | | | | | | | +--Pseudoxanthobacter (1) | | | | | | | | | +--Pseudoxanthobacter soli DSM 19599 (1) | | | | | | | +--Methylobacteriaceae (15) | | | | | | | | | +--Methylobacterium radiotolerans JCM 2831 (2) | | | | | | | | | +--Methylobacterium sp. Leaf456 (2) | | | | | | | | | +--Methylobacterium populi BJ001 (1) | | | | | | | | | +--Methylobacterium extorquens AM1 (6) | | | | | | | | | +--Methylobacterium chloromethanicum CM4 (1) | | | | | | | | | +--Microvirga ossetica (1) | | | | | | | | | +--Methylobacterium extorquens PA1 (1) | | | | | | | | | +--Methylobacterium indicum (1) | | | | | | | +--Bradyrhizobiaceae (13) | | | | | | | | | +--Rhodopseudomonas palustris (1) | | | | | | | | | +--Bosea sp. PAMC 26642 (1) | | | | | | | | | +--Bosea sp. TND4EK4 (1) | | | | | | | | | +--Bosea sp. Root381 (1) | | | | | | | | | +--Bosea sp. RAC05 (1) | | | | | | | | | +--Bosea vaviloviae (1) | | | | | | | | | +--Bosea sp. Root483D1 (1) | | | | | | | | | +--Afipia sp. Root123D2 (1) | | | | | | | | | +--Bosea sp. LC85 (1) | | | | | | | | | +--Rhodopseudomonas sp. R-45977 (1) | | | | | | | | | +--Bosea sp. WAO (1) | | | | | | | | | +--Nitrobacter hamburgensis X14 (2) | | | | | | | +--Beijerinckiaceae (2) | | | | | | | +--Beijerinckia indica subsp. indica ATCC 9039 (2) | | | | | +--Caulobacterales (14) | | | | | | | +--Caulobacterales bacterium GWE1_67_11 (1) | | | | | | | +--Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 (1) | | | | | | | +--Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 (1) | | | | | | | +--Caulobacteraceae (11) | | | | | | | +--Brevundimonas sp. AAP58 (1) | | | | | | | +--Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 (1) | | | | | | | +--Brevundimonas subvibrioides ATCC 15264 (1) | | | | | | | +--Brevundimonas diminuta ATCC 11568 (1) | | | | | | | +--Caulobacter vibrioides (1) | | | | | | | +--Asticcacaulis sp. YBE204 (1) | | | | | | | +--Brevundimonas sp. KM4 (1) | | | | | | | +--Asticcacaulis sp. AC466 (1) | | | | | | | +--Brevundimonas sp. Leaf363 (1) | | | | | | | +--Brevundimonas sp. BAL3 (1) | | | | | | | +--Phenylobacterium sp. Root1277 (1) | | | | | +--Rhodospirillales (8) | | | | | | | +--unclassifiedRhodospirillales (1) | | | | | | | | | +--Rhodospirillales bacterium 69-11 (1) | | | | | | | +--Acetobacteraceae (4) | | | | | | | | | +--Acetobacteraceae bacterium AT-5844 (1) | | | | | | | | | +--Roseomonas deserti (1) | | | | | | | | | +--Acidocella sp. MX-AZ02 (1) | | | | | | | | | +--Acidocella (1) | | | | | | | | | +--Acidocella aminolytica 101 = DSM 11237 (1) | | | | | | | +--Rhodospirillaceae (3) | | | | | | | +--Magnetospirillum magnetotacticum MS-1 (1) | | | | | | | +--Inquilinus (2) | | | | | | | +--Inquilinus limosus MP06 (2) | | | | | +--Rhizobiales bacterium 8.047 (1) | | | | | +--Sphingomonadales (83) | | | | | | | +--Erythrobacteraceae (4) | | | | | | | | | +--Porphyrobacter mercurialis (1) | | | | | | | | | +--Erythrobacter sp. SG61-1L (1) | | | | | | | | | +--Porphyrobacter sp. AAP60 (1) | | | | | | | | | +--Erythrobacter sp. QSSC1-22B (1) | | | | | | | +--Sphingomonadaceae (78) | | | | | | | | | +--Novosphingobium sp. AP12 (1) | | | | | | | | | +--Sphingopyxis macrogoltabida (1) | | | | | | | | | +--Novosphingobium sp. Leaf2 (1) | | | | | | | | | +--Sphingomonas sp. Leaf33 (1) | | | | | | | | | +--Novosphingobium sp. ST904 (1) | | | | | | | | | +--Sphingomonas sp. YIM 65583 (1) | | | | | | | | | +--Sphingomonas wittichii RW1 (2) | | | | | | | | | +--Sphingobium sp. LL03 (2) | | | | | | | | | +--Sphingobium sp. TCM1 (1) | | | | | | | | | +--Novosphingobium sp. LE124 (1) | | | | | | | | | +--Novosphingobium sp. PP1Y (1) | | | | | | | | | +--Sphingomonas sp. Leaf339 (1) | | | | | | | | | +--Sphingomonas sp. Ag1 (1) | | | | | | | | | +--Sphingomonas (2) | | | | | | | | | | | +--Sphingomonas sanxanigenens DSM 19645 = NX02 (1) | | | | | | | | | | | +--Sphingomonas paucimobilis NBRC 13935 (1) | | | | | | | | | +--Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 (1) | | | | | | | | | +--Novosphingobium barchaimii (2) | | | | | | | | | +--Sphingomonas sp. Root720 (1) | | | | | | | | | +--Sphingomonas sp. SRS2 (1) | | | | | | | | | +--Sphingomonas sp. Leaf9 (1) | | | | | | | | | +--Sphingomonas sp. Leaf34 (1) | | | | | | | | | +--Sphingopyxis sp. BZ30 (1) | | | | | | | | | +--Sphingomonas sp. Leaf231 (1) | | | | | | | | | +--Novosphingobium pentaromativorans US6-1 (1) | | | | | | | | | +--Sphingobium baderi (1) | | | | | | | | | +--Novosphingobium sp. B1 (1) | | | | | | | | | +--Sphingomonas jeddahensis (1) | | | | | | | | | +--Sphingomonas sp. SKA58 (2) | | | | | | | | | +--Sphingobium sp. SYK-6 (1) | | | | | | | | | +--Sphingomonas sp. JJ-A5 (1) | | | | | | | | | +--Sphingomonas mucosissima (1) | | | | | | | | | +--Sphingomonas sp. TDK1 (2) | | | | | | | | | +--Sphingomonas taxi (1) | | | | | | | | | +--Novosphingobium sp. AAP1 (1) | | | | | | | | | +--Sphingomonas sp. Leaf343 (1) | | | | | | | | | +--Sphingomonas dokdonensis (1) | | | | | | | | | +--Sphingopyxis alaskensis RB2256 (2) | | | | | | | | | +--Sphingomonas sp. Leaf17 (1) | | | | | | | | | +--Sphingomonas sp. WG (1) | | | | | | | | | +--Sphingobium chungbukense (2) | | | | | | | | | +--Novosphingobium sp. AAP83 (1) | | | | | | | | | +--Sphingomonas sp. TY (1) | | | | | | | | | +--Sphingomonas panacis (1) | | | | | | | | | +--Novosphingobium aromaticivorans DSM 12444 (2) | | | | | | | | | +--Sphingobium sp. Leaf26 (1) | | | | | | | | | +--Sphingobium sp. MI1205 (1) | | | | | | | | | +--Novosphingobium sp. MBES04 (2) | | | | | | | | | +--Sphingomonas sp. MCT13 (1) | | | | | | | | | +--Sphingomonas sp. Leaf42 (1) | | | | | | | | | +--Sphingobium sp. GW456-12-10-14-TSB1 (1) | | | | | | | | | +--Sphingomonas sp. Leaf412 (1) | | | | | | | | | +--Sphingobium sp. TKS (2) | | | | | | | | | +--Sphingomonas sp. Ant20 (1) | | | | | | | | | +--Sphingobium sp. C100 (1) | | | | | | | | | +--Sphingomonas hengshuiensis (1) | | | | | | | | | +--Sphingopyxis witflariensis (1) | | | | | | | | | +--Novosphingobium sp. Rr 2-17 (1) | | | | | | | | | +--Sphingomonas sp. LH128 (1) | | | | | | | | | +--Novosphingobium subterraneum (1) | | | | | | | | | +--Sphingobium sp. AP49 (1) | | | | | | | | | +--Sphingobium sp. Ant17 (2) | | | | | | | | | +--Sphingobium (4) | | | | | | | | | | | +--Sphingobium quisquiliarum P25 (1) | | | | | | | | | | | +--Sphingobium czechense LL01 (1) | | | | | | | | | | | +--Sphingobium japonicum BiD32 (1) | | | | | | | | | | | +--Sphingobium ummariense RL-3 (1) | | | | | | | | | +--Novosphingobium sp. P6W (1) | | | | | | | | | +--Pacificimonas flava (1) | | | | | | | +--Sphingomonadales bacterium GWF1_63_6 (1) | | | | | +--Rhodobacterales (74) | | | | | +--Rhodobacterales bacterium RIFCSPHIGHO2_02_FULL_62_130 (2) | | | | | +--Rhodobacteraceae (71) | | | | | | | +--Celeribacter (1) | | | | | | | | | +--Celeribacter baekdonensis B30 (1) | | | | | | | +--Rhodobacteraceae bacterium EhC02 (1) | | | | | | | +--Loktanella sp. 1ANDIMAR09 (1) | | | | | | | +--Roseisalinus antarcticus (1) | | | | | | | +--Paracoccus sp. SM22M-07 (2) | | | | | | | +--Loktanella vestfoldensis (1) | | | | | | | +--Haematobacter massiliensis (1) | | | | | | | +--Palleronia marisminoris (1) | | | | | | | +--Rhodobacter sphaeroides ATCC 17029 (2) | | | | | | | +--Roseovarius (1) | | | | | | | | | +--Roseovarius mucosus DSM 17069 (1) | | | | | | | +--Labrenzia sp. OB1 (1) | | | | | | | +--Thioclava sp. SK-1 (1) | | | | | | | +--Loktanella vestfoldensis SKA53 (2) | | | | | | | +--Roseovarius halotolerans (1) | | | | | | | +--Labrenzia sp. C1B10 (2) | | | | | | | +--Roseovarius pacificus (1) | | | | | | | +--Roseovarius sp. BRH_c41 (1) | | | | | | | +--Jannaschia seosinensis (2) | | | | | | | +--Roseovarius tolerans (1) | | | | | | | +--Roseovarius sp. A-2 (1) | | | | | | | +--Roseovarius sp. TM1035 (2) | | | | | | | +--Roseivivax sp. S5-5 (1) | | | | | | | +--Rhodobacteraceae bacterium HL-91 (1) | | | | | | | +--Paracoccus contaminans (1) | | | | | | | +--Paracoccus sanguinis (1) | | | | | | | +--Rhodobacteraceae bacterium GWF1_65_7 (1) | | | | | | | +--Roseovarius azorensis (1) | | | | | | | +--Rhodobacter sphaeroides KD131 (2) | | | | | | | +--Paracoccus sediminis (1) | | | | | | | +--Rhodobacter sphaeroides 2.4.1 (5) | | | | | | | +--Rhodobacteraceae bacterium HLUCCA12 (1) | | | | | | | +--Roseivivax (2) | | | | | | | | | +--Roseivivax isoporae LMG 25204 (1) | | | | | | | | | +--Roseivivax halodurans JCM 10272 (1) | | | | | | | +--Paracoccus sp. J56 (1) | | | | | | | +--Paracoccus yeei (1) | | | | | | | +--Rhodobacteraceae bacterium PD-2 (1) | | | | | | | +--Catellibacterium sp. CF17 (1) | | | | | | | +--Roseobacter sp. AzwK-3b (2) | | | | | | | +--Paracoccus denitrificans PD1222 (4) | | | | | | | +--Paracoccus seriniphilus (1) | | | | | | | +--Roseovarius sp. 217 (1) | | | | | | | +--Maritimibacter sp. HL-12 (1) | | | | | | | +--Paracoccus sp. 228 (4) | | | | | | | +--Maribius salinus (1) | | | | | | | +--Defluviimonas alba (1) | | | | | | | +--Paracoccus halotolerans (2) | | | | | | | +--Salipiger (1) | | | | | | | | | +--Salipiger mucosus DSM 16094 (1) | | | | | | | +--Pannonibacter phragmitetus (2) | | | | | | | +--Rhodobacter sphaeroides ATCC 17025 (3) | | | | | +--Rhodobacterales bacterium 65-51 (1) | | | +--Gammaproteobacteria (1) | | | | | +--Xanthomonadales (1) | | | | | +--Rhodanobacteraceae (1) | | | | | +--Rhodanobacter (1) | | | | | +--Rhodanobacter fulvus Jip2 (1) | | | +--alpha proteobacterium GRP21 (1) | | | +--Betaproteobacteria (8) | | | | | +--Burkholderiales (8) | | | | | +--Alcaligenaceae (8) | | | | | +--Achromobacter xylosoxidans AXX-A (1) | | | | | +--Pusillimonas sp. T7-7 (1) | | | | | +--Bordetella sp. AU10664 (1) | | | | | +--Alcaligenes sp. EGD-AK7 (1) | | | | | +--Bordetella hinzii (1) | | | | | +--Achromobacter piechaudii ATCC 43553 (2) | | | | | +--Achromobacter (1) | | | | | +--Achromobacter piechaudii HLE (1) | | | +--alpha proteobacterium USBA 355 (1) | +--unclassified sequences (10)