# Species tree for RF02913 # Generated from Rfam version 14.10 | +--Eukaryota (1) | | | +--Metazoa (1) | | | +--Arthropoda (1) | | | +--Hexapoda (1) | | | +--Insecta (1) | | | +--Pterygota (1) | | | +--Neoptera (1) | | | +--Endopterygota (1) | | | +--Diptera (1) | | | +--Brachycera (1) | | | +--Muscomorpha (1) | | | +--Hippoboscoidea (1) | | | +--Glossinidae (1) | | | +--Glossina morsitans morsitans (1) | +--Bacteria (1028) | | | +--Tenericutes (3) | | | | | +--Mollicutes (3) | | | | | +--Mycoplasmataceae (3) | | | | | +--Ureaplasma urealyticum serovar 13 str. ATCC 33698 (1) | | | | | +--Ureaplasma urealyticum serovar 2 str. ATCC 27814 (1) | | | | | +--Ureaplasma urealyticum serovar 9 str. ATCC 33175 (1) | | | +--Actinobacteria (5) | | | | | +--Actinobacteridae (5) | | | | | +--Actinomycetales (5) | | | | | +--Corynebacterineae (5) | | | | | +--Mycobacteriaceae (5) | | | | | +--Mycobacterium abscessus (5) | | | +--Proteobacteria (2) | | | | | +--Gammaproteobacteria (2) | | | | | +--Pasteurellales (2) | | | | | +--Pasteurellaceae (2) | | | | | +--Pasteurella (2) | | | | | +--Pasteurella bettyae CCUG 2042 (2) | | | +--Fusobacteria (1) | | | | | +--Fusobacteriales (1) | | | | | +--Fusobacteriaceae (1) | | | | | +--Fusobacterium gonidiaformans ATCC 25563 (1) | | | +--Spirochaetes (3) | | | | | +--Spirochaetales (3) | | | | | +--Spirochaetaceae (3) | | | | | +--Treponema succinifaciens DSM 2489 (1) | | | | | +--Treponema brennaborense DSM 12168 (2) | | | +--Terrabacteriagroup (430) | | | | | +--Actinobacteria (3) | | | | | | | +--Coriobacteriia (2) | | | | | | | | | +--Coriobacteriales (2) | | | | | | | | | +--Coriobacteriaceae (1) | | | | | | | | | | | +--Coriobacteriaceae bacterium CHKCI002 (1) | | | | | | | | | +--Atopobiaceae (1) | | | | | | | | | +--Atopobium (1) | | | | | | | | | +--Atopobium minutum 10063974 (1) | | | | | | | +--Actinobacteria (1) | | | | | | | +--Corynebacteriales (1) | | | | | | | +--Mycobacteriaceae (1) | | | | | | | +--Mycobacterium (1) | | | | | | | +--Mycobacteriumchelonaegroup (1) | | | | | | | +--Mycobacteriumabscessussubgroup (1) | | | | | | | +--Mycobacterium abscessus subsp. abscessus (1) | | | | | +--Firmicutes (427) | | | | | +--Firmicutes bacterium CAG:170 (1) | | | | | +--Firmicutes bacterium CAG:124 (2) | | | | | +--unclassifiedFirmicutessensustricto (3) | | | | | | | +--Firmicutes bacterium ASF500 (1) | | | | | | | +--Firmicutes bacterium CAG:110_56_8 (2) | | | | | +--Firmicutes bacterium CAG:646 (1) | | | | | +--Erysipelotrichia (11) | | | | | | | +--Erysipelotrichales (11) | | | | | | | +--Erysipelotrichaceae (11) | | | | | | | +--Candidatus Stoquefichus sp. KLE1796 (3) | | | | | | | +--unclassifiedErysipelotrichaceae (5) | | | | | | | | | +--Erysipelotrichaceae bacterium 21_3 (1) | | | | | | | | | +--Erysipelotrichaceae bacterium MTC7 (4) | | | | | | | +--Eggerthia (3) | | | | | | | +--Eggerthia catenaformis OT 569 = DSM 20559 (3) | | | | | +--Firmicutes bacterium CAG:424 (1) | | | | | +--Firmicutes bacterium CAG:466 (1) | | | | | +--Firmicutes bacterium CAG:94 (2) | | | | | +--Firmicutes bacterium CAG:110 (3) | | | | | +--Firmicutes bacterium CAG:41 (3) | | | | | +--Firmicutes bacterium CAG:145 (1) | | | | | +--Firmicutes bacterium CAG:272 (4) | | | | | +--Firmicutes bacterium CAG:83 (2) | | | | | +--Clostridia (302) | | | | | | | +--Thermoanaerobacterales (2) | | | | | | | | | +--Thermoanaerobacteraceae (2) | | | | | | | | | +--Thermacetogenium (2) | | | | | | | | | +--Thermacetogenium phaeum DSM 12270 (2) | | | | | | | +--unclassifiedClostridia (2) | | | | | | | | | +--Clostridia bacterium BRH_c25 (2) | | | | | | | +--Clostridiales (298) | | | | | | | +--Ruminococcaceae (40) | | | | | | | | | +--Ruminiclostridium sp. KB18 (7) | | | | | | | | | +--Subdoligranulum sp. 4_3_54A2FAA (6) | | | | | | | | | +--Anaerotruncus (3) | | | | | | | | | | | +--Anaerotruncus sp. CAG:390 (3) | | | | | | | | | +--Ruminococcus (9) | | | | | | | | | | | +--Ruminococcus sp. CAG:57 (2) | | | | | | | | | | | +--Ruminococcus sp. CAG:382 (2) | | | | | | | | | | | +--Ruminococcus sp. CAG:579 (2) | | | | | | | | | | | +--Ruminococcus sp. CAG:563 (1) | | | | | | | | | | | +--Ruminococcus callidus ATCC 27760 (1) | | | | | | | | | | | +--Ruminococcus sp. CAG:108 (1) | | | | | | | | | +--Ruminococcaceae bacterium CPB6 (1) | | | | | | | | | +--Faecalibacterium (2) | | | | | | | | | | | +--Faecalibacterium sp. CAG:74 (1) | | | | | | | | | | | +--Faecalibacterium sp. CAG:82 (1) | | | | | | | | | +--Ruminococcus sp. DSM 100440 (3) | | | | | | | | | +--Ruminiclostridium (2) | | | | | | | | | | | +--[Clostridium] clariflavum DSM 19732 (2) | | | | | | | | | +--Ruminococcus sp. CAG:9-related_41_34 (1) | | | | | | | | | +--Anaerotruncus sp. G3(2012) (4) | | | | | | | | | +--Papillibacter (2) | | | | | | | | | +--Papillibacter cinnamivorans DSM 12816 (2) | | | | | | | +--Peptostreptococcaceae (9) | | | | | | | | | +--Peptoclostridium (1) | | | | | | | | | | | +--Peptoclostridium acidaminophilum DSM 3953 (1) | | | | | | | | | +--Criibacterium bergeronii (4) | | | | | | | | | +--unclassifiedPeptostreptococcaceae (3) | | | | | | | | | | | +--Peptostreptococcaceae bacterium oral taxon 113 str. W5053 (3) | | | | | | | | | +--Peptostreptococcus (1) | | | | | | | | | +--Peptostreptococcus anaerobius CAG:621 (1) | | | | | | | +--Eubacteriaceae (28) | | | | | | | | | +--Eubacteriaceae bacterium CHKCI004 (2) | | | | | | | | | +--Eubacterium sp. 68-3-10 (5) | | | | | | | | | +--Eubacterium sp. 14-2 (5) | | | | | | | | | +--Eubacterium sp. 3_1_31 (4) | | | | | | | | | +--Eubacterium (10) | | | | | | | | | | | +--Eubacterium sp. CAG:180 (1) | | | | | | | | | | | +--Eubacterium plexicaudatum ASF492 (5) | | | | | | | | | | | +--Eubacterium sp. CAG:76 (1) | | | | | | | | | | | +--Eubacterium sp. CAG:786 (2) | | | | | | | | | | | +--Eubacterium dolichum CAG:375 (1) | | | | | | | | | +--Eubacterium sp. An11 (2) | | | | | | | +--Clostridiaceae (64) | | | | | | | | | +--Clostridium sp. BL8 (1) | | | | | | | | | +--Clostridium sp. C105KSO13 (2) | | | | | | | | | +--Clostridium (29) | | | | | | | | | | | +--Clostridium sp. CAG:352 (1) | | | | | | | | | | | +--Clostridium sp. CAG:226 (1) | | | | | | | | | | | +--Clostridium sp. CAG:299 (1) | | | | | | | | | | | +--Clostridium cavendishii DSM 21758 (1) | | | | | | | | | | | +--Clostridium sp. CAG:1024 (4) | | | | | | | | | | | +--Clostridium colicanis DSM 13634 (1) | | | | | | | | | | | +--Clostridium sp. CAG:590 (1) | | | | | | | | | | | +--Clostridium sp. CAG:964 (1) | | | | | | | | | | | +--Clostridium tetanomorphum DSM 665 (2) | | | | | | | | | | | +--Clostridium sp. CAG:678 (2) | | | | | | | | | | | +--Clostridium sp. CAG:343 (2) | | | | | | | | | | | +--Clostridium sp. CAG:557 (2) | | | | | | | | | | | +--Clostridium sp. CAG:1000 (1) | | | | | | | | | | | +--Clostridium sp. CAG:448 (1) | | | | | | | | | | | +--Clostridium sp. CAG:451 (1) | | | | | | | | | | | +--Clostridium sp. CAG:793 (1) | | | | | | | | | | | +--Clostridium collagenovorans DSM 3089 (1) | | | | | | | | | | | +--Clostridium bolteae CAG:59 (1) | | | | | | | | | | | +--Clostridium sp. CAG:710 (1) | | | | | | | | | | | +--Clostridium sp. CAG:58 (1) | | | | | | | | | | | +--Clostridium sp. CAG:465 (1) | | | | | | | | | | | +--Clostridium sp. CAG:354 (1) | | | | | | | | | +--Clostridium sp. ATCC 29733 (3) | | | | | | | | | +--Lactonifactor (4) | | | | | | | | | | | +--Lactonifactor longoviformis DSM 17459 (4) | | | | | | | | | +--Clostridium sp. W14A (6) | | | | | | | | | +--Clostridium sp. 27_14 (2) | | | | | | | | | +--Clostridium sp. BNL1100 (2) | | | | | | | | | +--Hathewaya (2) | | | | | | | | | | | +--Hathewaya proteolytica DSM 3090 (2) | | | | | | | | | +--Geosporobacter (1) | | | | | | | | | | | +--Geosporobacter subterraneus DSM 17957 (1) | | | | | | | | | +--Butyricicoccus (2) | | | | | | | | | | | +--Butyricicoccus pullicaecorum 1.2 (2) | | | | | | | | | +--Clostridium tepidum (2) | | | | | | | | | +--Clostridium oryzae (1) | | | | | | | | | +--Clostridium sp. FS41 (3) | | | | | | | | | +--Clostridiaceae bacterium BRH_c20a (2) | | | | | | | | | +--Clostridium sp. KLE 1755 (2) | | | | | | | +--Lachnospiraceae (60) | | | | | | | | | +--Lachnospiraceae bacterium 10-1 (1) | | | | | | | | | +--Blautia sp. An249 (2) | | | | | | | | | +--Blautia sp. An46 (3) | | | | | | | | | +--Blautia sp. YL58 (2) | | | | | | | | | +--Lachnospiraceae bacterium M18-1 (7) | | | | | | | | | +--Lachnoclostridium sp. An131 (1) | | | | | | | | | +--Anaerobium acetethylicum (1) | | | | | | | | | +--Dorea (2) | | | | | | | | | | | +--Dorea longicatena CAG:42 (1) | | | | | | | | | | | +--Dorea formicigenerans CAG:28 (1) | | | | | | | | | +--Roseburia (2) | | | | | | | | | | | +--Roseburia sp. CAG:50 (1) | | | | | | | | | | | +--Roseburia sp. CAG:100 (1) | | | | | | | | | +--Lachnospiraceae bacterium 3-2 (3) | | | | | | | | | +--Pseudobutyrivibrio (1) | | | | | | | | | | | +--Pseudobutyrivibrio xylanivorans DSM 14809 (1) | | | | | | | | | +--Hespellia (2) | | | | | | | | | | | +--Hespellia stercorisuis DSM 15480 (2) | | | | | | | | | +--unclassifiedLachnospiraceae (1) | | | | | | | | | | | +--Lachnospiraceae bacterium oral taxon 082 str. F0431 (1) | | | | | | | | | +--Lachnospiraceae bacterium CAG:215 (1) | | | | | | | | | +--Butyrivibrio (1) | | | | | | | | | | | +--Butyrivibrio crossotus CAG:259 (1) | | | | | | | | | +--Lachnospiraceae bacterium COE1 (6) | | | | | | | | | +--Anaerosporobacter (2) | | | | | | | | | | | +--Anaerosporobacter mobilis DSM 15930 (2) | | | | | | | | | +--Lachnoclostridium sp. An14 (1) | | | | | | | | | +--Lachnoclostridium sp. An169 (1) | | | | | | | | | +--Roseburia sp. 831b (1) | | | | | | | | | +--Lachnoclostridium sp. An76 (1) | | | | | | | | | +--Lachnoclostridium sp. An118 (2) | | | | | | | | | +--Lachnoclostridium sp. An298 (2) | | | | | | | | | +--Dorea sp. 5-2 (4) | | | | | | | | | +--Blautia (1) | | | | | | | | | | | +--Blautia sp. CAG:237 (1) | | | | | | | | | +--Lachnospiraceae bacterium 7_1_58FAA (4) | | | | | | | | | +--Roseburia sp. 40_7 (1) | | | | | | | | | +--Lachnoclostridium sp. YL32 (4) | | | | | | | +--Clostridialesincertaesedis (6) | | | | | | | | | +--ClostridialesFamilyXIII.IncertaeSedis (6) | | | | | | | | | +--Eubacterium infirmum F0142 (1) | | | | | | | | | +--Eubacterium nodatum ATCC 33099 (5) | | | | | | | +--Peptococcaceae (16) | | | | | | | | | +--Desulfotomaculum sp. 46_296 (1) | | | | | | | | | +--Desulfitobacterium (4) | | | | | | | | | | | +--Desulfitobacterium dichloroeliminans LMG P-21439 (4) | | | | | | | | | +--Desulfotomaculum sp. 46_80 (1) | | | | | | | | | +--Dehalobacter sp. CF (2) | | | | | | | | | +--Desulfosporosinus sp. OL (4) | | | | | | | | | +--Desulfosporosinus sp. I2 (3) | | | | | | | | | +--Desulfosporosinus sp. Tol-M (1) | | | | | | | +--unclassifiedClostridiales (58) | | | | | | | | | +--Clostridiales bacterium CHKCI006 (3) | | | | | | | | | +--Clostridiales bacterium 36_14 (5) | | | | | | | | | +--Clostridiales bacterium KLE1615 (2) | | | | | | | | | +--Clostridiales bacterium 44_9 (3) | | | | | | | | | +--Clostridiales bacterium 38-18 (1) | | | | | | | | | +--Clostridiales bacterium KA00274 (2) | | | | | | | | | +--Intestinimonas butyriciproducens (3) | | | | | | | | | +--Clostridiales bacterium GWF2_38_85 (2) | | | | | | | | | +--Clostridiales bacterium 41_21_two_genomes (5) | | | | | | | | | +--Clostridiales bacterium 45_37 (2) | | | | | | | | | +--Flavonifractor (5) | | | | | | | | | | | +--Flavonifractor plautii ATCC 29863 (5) | | | | | | | | | +--Clostridiales bacterium CHKCI001 (1) | | | | | | | | | +--Clostridiales bacterium 42_27 (5) | | | | | | | | | +--Clostridiales bacterium 41_12_two_minus (5) | | | | | | | | | +--unclassifiedClostridiales(miscellaneous) (2) | | | | | | | | | | | +--Clostridiales bacterium oral taxon 876 str. F0540 (2) | | | | | | | | | +--Clostridiales bacterium KA00134 (3) | | | | | | | | | +--Clostridiales bacterium 52_15 (6) | | | | | | | | | +--Clostridiales bacterium Nov_37_41 (3) | | | | | | | +--Oscillospiraceae (16) | | | | | | | | | +--Oscillibacter sp. 1-3 (7) | | | | | | | | | +--Oscillibacter (5) | | | | | | | | | | | +--Oscillibacter sp. CAG:155 (2) | | | | | | | | | | | +--Oscillibacter sp. CAG:241 (3) | | | | | | | | | +--Oscillibacter sp. KLE 1745 (4) | | | | | | | +--Gracilibacteraceae (1) | | | | | | | +--Gracilibacter sp. BRH_c7a (1) | | | | | +--Bacilli (63) | | | | | | | +--Lactobacillales (51) | | | | | | | | | +--Streptococcaceae (18) | | | | | | | | | | | +--Streptococcus (17) | | | | | | | | | | | | | +--Streptococcus mutans LJ23 (1) | | | | | | | | | | | | | +--Streptococcus agalactiae LMG 14747 (2) | | | | | | | | | | | | | +--Streptococcus macedonicus ACA-DC 198 (2) | | | | | | | | | | | | | +--Streptococcus lutetiensis 033 (1) | | | | | | | | | | | | | +--Streptococcusdysgalactiaegroup (4) | | | | | | | | | | | | | | | +--Streptococcusdysgalactiae (4) | | | | | | | | | | | | | | | +--Streptococcus dysgalactiae subsp. equisimilis RE378 (4) | | | | | | | | | | | | | +--Streptococcusanginosusgroup (2) | | | | | | | | | | | | | | | +--Streptococcus intermedius B196 (2) | | | | | | | | | | | | | +--Streptococcus pyogenes serotype M1 (1) | | | | | | | | | | | | | +--Streptococcus canis FSL Z3-227 (1) | | | | | | | | | | | | | +--Streptococcusinfantarius (1) | | | | | | | | | | | | | | | +--Streptococcus infantarius subsp. infantarius CJ18 (1) | | | | | | | | | | | | | +--Streptococcus pneumoniae 2070335 (2) | | | | | | | | | | | +--Streptococcus sp. DORA_10 (1) | | | | | | | | | +--Carnobacteriaceae (5) | | | | | | | | | | | +--Jeotgalibaca sp. PTS2502 (1) | | | | | | | | | | | +--Atopostipes (3) | | | | | | | | | | | | | +--Atopostipes suicloacalis DSM 15692 (3) | | | | | | | | | | | +--Carnobacterium (1) | | | | | | | | | | | +--Carnobacterium maltaromaticum ATCC 35586 (1) | | | | | | | | | +--Enterococcaceae (17) | | | | | | | | | | | +--Enterococcus sp. HSIEG1 (3) | | | | | | | | | | | +--Enterococcus (12) | | | | | | | | | | | | | +--Enterococcus villorum ATCC 700913 (1) | | | | | | | | | | | | | +--Enterococcus dispar ATCC 51266 (1) | | | | | | | | | | | | | +--Enterococcus avium ATCC 14025 (2) | | | | | | | | | | | | | +--Enterococcus gilvus ATCC BAA-350 (2) | | | | | | | | | | | | | +--Enterococcus faecalis D32 (2) | | | | | | | | | | | | | +--Enterococcus phoeniculicola ATCC BAA-412 (2) | | | | | | | | | | | | | +--Enterococcus pallens ATCC BAA-351 (1) | | | | | | | | | | | | | +--Enterococcus columbae DSM 7374 = ATCC 51263 (1) | | | | | | | | | | | +--Enterococcus sp. 2G9_DIV0600 (1) | | | | | | | | | | | +--Enterococcus sp. 8G7_MSG3316 (1) | | | | | | | | | +--Lactobacillaceae (6) | | | | | | | | | | | +--Lactobacillus (6) | | | | | | | | | | | +--Lactobacillus amylophilus DSM 20533 = JCM 1125 (1) | | | | | | | | | | | +--Lactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 (1) | | | | | | | | | | | +--Lactobacillus bifermentans DSM 20003 (1) | | | | | | | | | | | +--Lactobacillus vini DSM 20605 (2) | | | | | | | | | | | +--Lactobacillus dextrinicus DSM 20335 (1) | | | | | | | | | +--Aerococcaceae (5) | | | | | | | | | +--Facklamia (4) | | | | | | | | | | | +--Facklamia ignava CCUG 37419 (3) | | | | | | | | | | | +--Facklamia hominis CCUG 36813 (1) | | | | | | | | | +--Globicatella sp. HMSC072A10 (1) | | | | | | | +--Bacillales (10) | | | | | | | | | +--Paenibacillaceae (7) | | | | | | | | | | | +--Paenibacillus sp. FSL R5-0912 (1) | | | | | | | | | | | +--Paenibacillus sp. VKM B-2647 (2) | | | | | | | | | | | +--Paenibacillus (4) | | | | | | | | | | | +--Paenibacillus sabinae T27 (1) | | | | | | | | | | | +--Paenibacillus dendritiformis C454 (3) | | | | | | | | | +--Bacillaceae (2) | | | | | | | | | | | +--Bacillus sp. FJAT-26390 (1) | | | | | | | | | | | +--Bacillus sp. VT-16-64 (1) | | | | | | | | | +--Listeriaceae (1) | | | | | | | | | +--Listeria (1) | | | | | | | | | +--Listeria aquatica FSL S10-1188 (1) | | | | | | | +--unclassifiedBacilli (2) | | | | | | | +--Bacilli bacterium VT-13-104 (2) | | | | | +--Firmicutes bacterium CAG:791 (2) | | | | | +--Firmicutes bacterium CAG:102 (1) | | | | | +--Firmicutes bacterium CAG:129 (1) | | | | | +--Tissierellia (23) | | | | | +--Tissierellales (15) | | | | | | | +--Sporanaerobacter (1) | | | | | | | | | +--Sporanaerobacter acetigenes DSM 13106 (1) | | | | | | | +--Sporanaerobacter sp. PP17-6a (1) | | | | | | | +--Tissierellaceae (4) | | | | | | | | | +--Tissierella (4) | | | | | | | | | +--Tissierella creatinophila DSM 6911 (2) | | | | | | | | | +--Tissierella praeacuta DSM 18095 (2) | | | | | | | +--Peptoniphilaceae (9) | | | | | | | +--Peptoniphilus (3) | | | | | | | | | +--Peptoniphilus lacrimalis DNF00528 (3) | | | | | | | +--Anaerosphaera sp. HMSC064C01 (2) | | | | | | | +--Anaerosphaera (1) | | | | | | | | | +--Anaerosphaera aminiphila DSM 21120 (1) | | | | | | | +--Peptoniphilus grossensis (1) | | | | | | | +--Helcococcus (2) | | | | | | | +--Helcococcus kunzii ATCC 51366 (2) | | | | | +--unclassifiedTissierellia (8) | | | | | +--Tissierellia bacterium KA00581 (2) | | | | | +--Tissierellia bacterium S7-1-4 (2) | | | | | +--[Clostridium] ultunense Esp (1) | | | | | +--Tissierellia bacterium S5-A11 (3) | | | +--FCBgroup (3) | | | | | +--Bacteroidetes/Chlorobigroup (3) | | | | | +--Bacteroidetes (3) | | | | | +--Sphingobacteriia (3) | | | | | +--Sphingobacteriales (3) | | | | | +--Sphingobacteriaceae (3) | | | | | +--Sphingobacterium (3) | | | | | +--Sphingobacterium faecium PCAi_F2.5 (3) | | | +--Firmicutes (581) | | | +--Clostridia (379) | | | | | +--butyrate-producing bacterium SS3/4 (4) | | | | | +--Clostridiales bacterium BV3C26 (4) | | | | | +--Clostridiales bacterium 1_7_47FAA (1) | | | | | +--butyrate-producing bacterium SM4/1 (2) | | | | | +--Clostridiales genomosp. BVAB3 str. UPII9-5 (3) | | | | | +--Clostridiales (365) | | | | | +--Lachnospiraceae bacterium 2_1_58FAA (1) | | | | | +--Heliobacteriaceae (2) | | | | | | | +--Heliobacterium modesticaldum Ice1 (2) | | | | | +--Lachnospiraceae bacterium ACC2 (2) | | | | | +--Lachnospiraceae bacterium 9_1_43BFAA (1) | | | | | +--Peptostreptococcaceae (11) | | | | | | | +--Filifactor alocis ATCC 35896 (5) | | | | | | | +--Peptostreptococcus anaerobius 653-L (3) | | | | | | | +--Peptostreptococcus stomatis DSM 17678 (3) | | | | | +--Eubacteriaceae (14) | | | | | | | +--Anaerofustis stercorihominis DSM 17244 (2) | | | | | | | +--Eubacterium yurii subsp. margaretiae ATCC 43715 (1) | | | | | | | +--Eubacterium ventriosum ATCC 27560 (2) | | | | | | | +--Eubacterium hadrum (3) | | | | | | | +--Eubacterium siraeum DSM 15702 (1) | | | | | | | +--Eubacterium sp. AS15b (4) | | | | | | | +--Eubacterium siraeum 70/3 (1) | | | | | +--Lachnospiraceae (31) | | | | | | | +--Marvinbryantia formatexigens DSM 14469 (3) | | | | | | | +--Roseburia hominis A2-183 (1) | | | | | | | +--Roseburia intestinalis L1-82 (1) | | | | | | | +--Catonella morbi ATCC 51271 (1) | | | | | | | +--Dorea formicigenerans 4_6_53AFAA (1) | | | | | | | +--Clostridium proteoclasticum (1) | | | | | | | +--Roseburia intestinalis XB6B4 (2) | | | | | | | +--Roseburia inulinivorans DSM 16841 (1) | | | | | | | +--Oribacterium sp. ACB1 (1) | | | | | | | +--Shuttleworthia satelles DSM 14600 (6) | | | | | | | +--Coprococcus comes ATCC 27758 (1) | | | | | | | +--Johnsonella ignava ATCC 51276 (12) | | | | | +--Oscillospiraceae (9) | | | | | | | +--Oscillibacter valericigenes Sjm18-20 (9) | | | | | +--Lachnospiraceae bacterium ICM7 (2) | | | | | +--Eubacteriaceae bacterium ACC19a (11) | | | | | +--Blautia hydrogenotrophica DSM 10507 (1) | | | | | +--Ruminococcaceae (69) | | | | | | | +--Ruminococcus sp. 18P13 (2) | | | | | | | +--Faecalibacterium prausnitzii M21/2 (4) | | | | | | | +--Ruminococcus flavefaciens FD-1 (2) | | | | | | | +--Faecalibacterium prausnitzii SL3/3 (2) | | | | | | | +--Ruminococcus obeum ATCC 29174 (2) | | | | | | | +--Ruminococcus sp. SR1/5 (1) | | | | | | | +--Ethanoligenens harbinense YUAN-3 (4) | | | | | | | +--Ruminococcaceae bacterium D16 (4) | | | | | | | +--Acetivibrio ethanolgignens (1) | | | | | | | +--Ruminococcus torques L2-14 (2) | | | | | | | +--Subdoligranulum variabile DSM 15176 (2) | | | | | | | +--Anaerotruncus colihominis DSM 17241 (3) | | | | | | | +--Faecalibacterium prausnitzii (9) | | | | | | | +--Faecalibacterium prausnitzii A2-165 (11) | | | | | | | +--Faecalibacterium cf. prausnitzii KLE1255 (10) | | | | | | | +--Faecalibacterium prausnitzii L2-6 (9) | | | | | | | +--Ruminococcus lactaris ATCC 29176 (1) | | | | | +--Lachnospiraceae bacterium 3_1_57FAA_CT1 (3) | | | | | +--ClostridialesFamilyXI.IncertaeSedis (49) | | | | | | | +--Finegoldia magna ACS-171-V-Col3 (2) | | | | | | | +--Anaerococcus prevotii DSM 20548 (1) | | | | | | | +--Finegoldia magna ATCC 29328 (2) | | | | | | | +--Peptoniphilus harei ACS-146-V-Sch2b (5) | | | | | | | +--Anaerococcus tetradius ATCC 35098 (2) | | | | | | | +--Parvimonas micra (1) | | | | | | | +--Finegoldia magna BVS033A4 (1) | | | | | | | +--Peptoniphilus sp. oral taxon 386 str. F0131 (2) | | | | | | | +--Peptoniphilus sp. oral taxon 836 str. F0141 (1) | | | | | | | +--Peptoniphilus lacrimalis 315-B (2) | | | | | | | +--Finegoldia magna ATCC 53516 (1) | | | | | | | +--Peptoniphilus asaccharolyticus DSM 20463 (1) | | | | | | | +--Anaerococcus prevotii ACS-065-V-Col13 (1) | | | | | | | +--Peptoniphilus duerdenii ATCC BAA-1640 (4) | | | | | | | +--Peptoniphilus sp. oral taxon 375 str. F0436 (3) | | | | | | | +--Anaerococcus hydrogenalis DSM 7454 (1) | | | | | | | +--Anaerococcus lactolyticus ATCC 51172 (6) | | | | | | | +--Peptoniphilus indolicus ATCC 29427 (5) | | | | | | | +--Anaerococcus hydrogenalis ACS-025-V-Sch4 (1) | | | | | | | +--Anaerococcus vaginalis ATCC 51170 (4) | | | | | | | +--Peptoniphilus sp. 1-13 (1) | | | | | | | +--Peptoniphilus sp. RMA 16757 (1) | | | | | | | +--Parvimonas micra ATCC 33270 (1) | | | | | +--Lachnospiraceae bacterium A2 (8) | | | | | +--ClostridialesFamilyXIII.IncertaeSedis (9) | | | | | | | +--Mogibacterium sp. CM50 (8) | | | | | | | +--Mogibacterium pumilum (1) | | | | | +--Lachnospiraceae bacterium 3-1 (4) | | | | | +--Clostridiaceae (91) | | | | | | | +--Thermotalea metallivorans (1) | | | | | | | +--Clostridium saccharolyticum WM1 (7) | | | | | | | +--Clostridium citroniae WAL-17108 (1) | | | | | | | +--Clostridium sp. M62/1 (3) | | | | | | | +--Clostridium sp. 232.1 (1) | | | | | | | +--Clostridium bolteae ATCC BAA-613 (4) | | | | | | | +--Clostridium papyrosolvens DSM 2782 (1) | | | | | | | +--Clostridium methylpentosum DSM 5476 (2) | | | | | | | +--Clostridium cellulosi (1) | | | | | | | +--Clostridium sp. D5 (3) | | | | | | | +--Clostridium cellulolyticum H10 (2) | | | | | | | +--Clostridium difficile QCD-23m63 (1) | | | | | | | +--Clostridium hiranonis DSM 13275 (1) | | | | | | | +--Clostridium perfringens B str. ATCC 3626 (1) | | | | | | | +--Clostridium sp. DMHC 10 (1) | | | | | | | +--Clostridium clostridioforme 2_1_49FAA (3) | | | | | | | +--Oxobacter pfennigii (1) | | | | | | | +--Clostridium sulfidigenes (1) | | | | | | | +--Clostridium difficile 630 (5) | | | | | | | +--Clostridium nexile DSM 1787 (4) | | | | | | | +--Clostridium difficile M120 (1) | | | | | | | +--Clostridium sp. ASF502 (5) | | | | | | | +--Clostridium cf. saccharolyticum K10 (4) | | | | | | | +--Clostridium difficile QCD-63q42 (1) | | | | | | | +--Clostridium difficile ATCC 43255 (1) | | | | | | | +--Clostridium difficile CF5 (1) | | | | | | | +--Clostridium asparagiforme DSM 15981 (1) | | | | | | | +--Clostridium kluyveri DSM 555 (4) | | | | | | | +--Clostridium sp. DL-VIII (3) | | | | | | | +--Clostridium cadaveris (4) | | | | | | | +--Clostridium puniceum (1) | | | | | | | +--Clostridium sp. MSTE9 (2) | | | | | | | +--Clostridium perfringens D str. JGS1721 (1) | | | | | | | +--Clostridium sp. SY8519 (4) | | | | | | | +--Clostridium sp. 7_3_54FAA (1) | | | | | | | +--Clostridium difficile (7) | | | | | | | +--Clostridium sp. ASF356 (1) | | | | | | | +--Clostridium symbiosum WAL-14163 (2) | | | | | | | +--Clostridium neopropionicum (3) | | | | | +--Christensenellaceae (5) | | | | | | | +--Christensenella minuta (5) | | | | | +--Pseudoflavonifractor capillosus ATCC 29799 (5) | | | | | +--Lachnospiraceae bacterium 2_1_46FAA (4) | | | | | +--Peptococcaceae (16) | | | | | | | +--Desulfitobacterium hafniense Y51 (6) | | | | | | | +--Desulfotomaculum gibsoniae DSM 7213 (4) | | | | | | | +--Desulfotomaculum acetoxidans DSM 771 (2) | | | | | | | +--Syntrophobotulus glycolicus DSM 8271 (2) | | | | | | | +--Desulfosporosinus youngiae DSM 17734 (1) | | | | | | | +--Desulfitobacterium hafniense DCB-2 (1) | | | | | +--Catabacteriaceae (4) | | | | | | | +--Catabacter hongkongensis (4) | | | | | +--Lachnospiraceae oral taxon 107 str. F0167 (2) | | | | | +--Lachnospiraceae bacterium 28-4 (4) | | | | | +--Lachnospiraceae bacterium A4 (7) | | | +--Negativicutes (8) | | | | | +--Selenomonadales (8) | | | | | +--Acidaminococcaceae (1) | | | | | | | +--Phascolarctobacterium sp. YIT 12067 (1) | | | | | +--Veillonellaceae (7) | | | | | +--Dialister micraerophilus DSM 19965 (1) | | | | | +--Acetonema longum DSM 6540 (1) | | | | | +--Dialister microaerophilus UPII 345-E (1) | | | | | +--Veillonella parvula (1) | | | | | +--Sporomusa sp. An4 (1) | | | | | +--Megasphaera genomosp. type_1 str. 28L (2) | | | +--Lactobacillales (132) | | | | | +--Streptococcaceae (84) | | | | | | | +--Streptococcus henryi (1) | | | | | | | +--Streptococcus suis 89/1591 (2) | | | | | | | +--Streptococcus pneumoniae SP14-BS69 (2) | | | | | | | +--Streptococcus pneumoniae ATCC 700669 (2) | | | | | | | +--Streptococcus pneumoniae INV104 (1) | | | | | | | +--Streptococcus pyogenes MGAS9429 (1) | | | | | | | +--Streptococcus (6) | | | | | | | | | +--Streptococcus anginosus SK52 (1) | | | | | | | | | +--Streptococcus anginosus F0211 (2) | | | | | | | | | +--Streptococcus constellatus subsp. pharyngis SK1060 (3) | | | | | | | +--Streptococcus suis BM407 (2) | | | | | | | +--Streptococcus cristatus ATCC 51100 (1) | | | | | | | +--Streptococcus pseudoporcinus SPIN 20026 (2) | | | | | | | +--Streptococcus ictaluri 707-05 (2) | | | | | | | +--Streptococcus pasteurianus ATCC 43144 (1) | | | | | | | +--Streptococcus bovis ATCC 700338 (1) | | | | | | | +--Streptococcus pneumoniae CCRI 1974 (1) | | | | | | | +--Streptococcus agalactiae ATCC 13813 (2) | | | | | | | +--Streptococcus pneumoniae SP3-BS71 (1) | | | | | | | +--Streptococcus pneumoniae SP23-BS72 (1) | | | | | | | +--Streptococcus pneumoniae OXC141 (1) | | | | | | | +--Streptococcus suis SS12 (1) | | | | | | | +--Streptococcus agalactiae NEM316 (1) | | | | | | | +--Streptococcus pneumoniae SP6-BS73 (2) | | | | | | | +--Streptococcus pyogenes ATCC 10782 (2) | | | | | | | +--Streptococcus uberis (2) | | | | | | | +--Streptococcus suis 05ZYH33 (2) | | | | | | | +--Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 (2) | | | | | | | +--Streptococcus pneumoniae Hungary19A-6 (1) | | | | | | | +--Streptococcus thermophilus JIM 8232 (1) | | | | | | | +--Streptococcus parauberis NCFD 2020 (2) | | | | | | | +--Streptococcus vestibularis F0396 (1) | | | | | | | +--Streptococcus suis JS14 (1) | | | | | | | +--Streptococcus pneumoniae TIGR4 (1) | | | | | | | +--Streptococcus pneumoniae R6 (3) | | | | | | | +--Streptococcus pneumoniae G54 (1) | | | | | | | +--Streptococcus equi subsp. equi 4047 (1) | | | | | | | +--Streptococcus suis GZ1 (1) | | | | | | | +--Streptococcus pneumoniae AP200 (2) | | | | | | | +--Streptococcus suis D9 (2) | | | | | | | +--Streptococcus uberis 0140J (2) | | | | | | | +--Streptococcus urinalis 2285-97 (1) | | | | | | | +--Streptococcus suis 98HAH33 (1) | | | | | | | +--Streptococcus gallolyticus (2) | | | | | | | +--Streptococcus suis SC84 (1) | | | | | | | +--Streptococcus agalactiae 2603V/R (2) | | | | | | | +--Streptococcus equi subsp. zooepidemicus (2) | | | | | | | +--Streptococcus pyogenes MGAS10270 (1) | | | | | | | +--Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 (3) | | | | | | | +--Streptococcus pneumoniae INV200 (1) | | | | | | | +--Streptococcus pyogenes MGAS6180 (2) | | | | | | | +--Streptococcus pseudoporcinus LQ 940-04 (5) | | | | | | | +--Streptococcus pyogenes MGAS10750 (2) | | | | | +--Enterococcaceae (41) | | | | | | | +--Enterococcus faecalis TX0470 (1) | | | | | | | +--Enterococcus faecalis HH22 (1) | | | | | | | +--Enterococcus faecium E1039 (1) | | | | | | | +--Enterococcus faecalis T8 (2) | | | | | | | +--Enterococcus aquimarinus (1) | | | | | | | +--Enterococcus faecalis Merz96 (1) | | | | | | | +--Enterococcus faecalis T11 (1) | | | | | | | +--Enterococcus faecalis ATCC 4200 (1) | | | | | | | +--Enterococcus faecalis TX0855 (1) | | | | | | | +--Enterococcus faecalis V583 (6) | | | | | | | +--Tetragenococcus halophilus NBRC 12172 (2) | | | | | | | +--Enterococcus faecium E1071 (1) | | | | | | | +--Enterococcus faecalis 62 (1) | | | | | | | +--Enterococcus faecalis E1Sol (1) | | | | | | | +--Enterococcus devriesei (2) | | | | | | | +--Enterococcus faecalis S613 (1) | | | | | | | +--Enterococcus gallinarum EG2 (1) | | | | | | | +--Enterococcus faecalis TX0104 (3) | | | | | | | +--Enterococcus faecalis ARO1/DG (1) | | | | | | | +--Enterococcus faecium DO (1) | | | | | | | +--Enterococcus faecium 1,231,408 (1) | | | | | | | +--Enterococcus faecalis Fly1 (2) | | | | | | | +--Enterococcus faecalis OG1RF (1) | | | | | | | +--Enterococcus faecalis TX0102 (1) | | | | | | | +--Enterococcus faecium E1679 (1) | | | | | | | +--Enterococcus faecalis JH1 (1) | | | | | | | +--Enterococcus termitis (2) | | | | | | | +--Enterococcus faecium C68 (2) | | | | | +--Lactobacillaceae (2) | | | | | | | +--Lactobacillus curvatus CRL 705 (1) | | | | | | | +--Lactobacillus coryniformis subsp. coryniformis KCTC 3167 (1) | | | | | +--Aerococcaceae (5) | | | | | +--Aerococcus urinae ACS-120-V-Col10a (2) | | | | | +--Eremococcus coleocola ACS-139-V-Col8 (1) | | | | | +--Abiotrophia defectiva ATCC 49176 (1) | | | | | +--Aerococcus christensenii (1) | | | +--Bacillales (34) | | | | | +--Staphylococcus aureus A9754 (1) | | | | | +--BacillalesFamilyXI.IncertaeSedis (1) | | | | | | | +--Gemella moribillum M424 (1) | | | | | +--Paenibacillaceae (9) | | | | | | | +--Paenibacillus naphthalenovorans (1) | | | | | | | +--Paenibacillus stellifer (1) | | | | | | | +--Paenibacillus sp. MY03 (1) | | | | | | | +--Paenibacillus sp. IHB B 3415 (1) | | | | | | | +--Paenibacillus macerans (2) | | | | | | | +--Paenibacillus elgii B69 (1) | | | | | | | +--Paenibacillus sp. D9 (2) | | | | | +--Bacillaceae (13) | | | | | | | +--Bacillus macroides (2) | | | | | | | +--Oceanobacillus oncorhynchi (1) | | | | | | | +--Virgibacillus pantothenticus (3) | | | | | | | +--Virgibacillus sp. CC-YMP-6 (3) | | | | | | | +--Bacillus galactosidilyticus (2) | | | | | | | +--Ornithinibacillus sp. TW25 (1) | | | | | | | +--Bacillus (1) | | | | | | | +--Bacillus cytotoxicus NVH 391-98 (1) | | | | | +--Staphylococcus pseudintermedius (2) | | | | | +--Sporolactobacillaceae (2) | | | | | | | +--Sporolactobacillus inulinus CASD (2) | | | | | +--Listeriaceae (6) | | | | | +--Listeria monocytogenes ATCC 19117 (1) | | | | | +--Listeria welshimeri serovar 6b str. SLCC5334 (1) | | | | | +--Listeria monocytogenes 08-5923 (1) | | | | | +--Listeria monocytogenes EGD-e (1) | | | | | +--Listeria seeligeri serovar 1/2b str. SLCC3954 (1) | | | | | +--Listeria monocytogenes FSL J2-003 (1) | | | +--Erysipelotrichi (28) | | | +--Erysipelotrichales (28) | | | +--Erysipelotrichaceae (16) | | | | | +--Coprobacillus sp. 29_1 (7) | | | | | +--Coprobacillus sp. D7 (1) | | | | | +--Coprobacillus cateniformis (3) | | | | | +--Holdemania filiformis DSM 12042 (3) | | | | | +--Solobacterium moorei F0204 (2) | | | +--Eubacterium biforme DSM 3989 (3) | | | +--Erysipelotrichaceae bacterium 3_1_53 (6) | | | +--Eubacterium cylindroides T2-87 (3) | +--unclassified sequences (1263)