# Species tree for RF01317 # Generated from Rfam version 15.00 | +--Eukaryota (122) | | | +--Metazoa (86) | | | | | +--Nematoda (37) | | | | | | | +--Chromadorea (37) | | | | | | | +--Rhabditida (37) | | | | | | | +--Strongylida (2) | | | | | | | | | +--Strongyloidea (2) | | | | | | | | | +--Strongylidae (2) | | | | | | | | | +--Cyathostominae (2) | | | | | | | | | +--Cylicocyclus nassatus (2) | | | | | | | +--Rhabditoidea (35) | | | | | | | +--Rhabditidae (35) | | | | | | | +--Peloderinae (35) | | | | | | | +--Caenorhabditis remanei (35) | | | | | +--Chordata (2) | | | | | | | +--Craniata (2) | | | | | | | +--Vertebrata (2) | | | | | | | +--Euteleostomi (2) | | | | | | | +--Archosauria (2) | | | | | | | +--Dinosauria (2) | | | | | | | +--Saurischia (2) | | | | | | | +--Theropoda (2) | | | | | | | +--Coelurosauria (2) | | | | | | | +--Aves (2) | | | | | | | +--Neognathae (2) | | | | | | | +--Passeriformes (2) | | | | | | | +--Turdidae (1) | | | | | | | | | +--Catharus fuscescens (1) | | | | | | | +--Passeroidea (1) | | | | | | | +--Fringillidae (1) | | | | | | | +--Emberizinae (1) | | | | | | | +--Parulini (1) | | | | | | | +--Dendroica kirtlandii (Kirtland's warbler) (1) | | | | | +--Arthropoda (18) | | | | | | | +--Hexapoda (6) | | | | | | | | | +--Insecta (6) | | | | | | | | | +--Pterygota (6) | | | | | | | | | +--Neoptera (6) | | | | | | | | | +--Endopterygota (6) | | | | | | | | | +--Diptera (6) | | | | | | | | | +--Brachycera (6) | | | | | | | | | +--Muscomorpha (6) | | | | | | | | | +--Oestroidea (6) | | | | | | | | | +--Calliphoridae (6) | | | | | | | | | +--Luciliinae (6) | | | | | | | | | +--Lucilia cuprina (6) | | | | | | | +--Crustacea (12) | | | | | | | +--Branchiopoda (5) | | | | | | | | | +--Diplostraca (5) | | | | | | | | | +--Cladocera (5) | | | | | | | | | +--Anomopoda (5) | | | | | | | | | +--Daphniidae (5) | | | | | | | | | +--Daphnia magna (5) | | | | | | | +--Ostracoda (7) | | | | | | | +--Podocopa (7) | | | | | | | +--Podocopida (7) | | | | | | | +--Cypridocopina (7) | | | | | | | +--Cypridoidea (7) | | | | | | | +--Cyprididae (7) | | | | | | | +--Notodromas monacha (7) | | | | | +--Annelida (29) | | | | | +--Polychaeta (29) | | | | | +--Scolecida (29) | | | | | +--Capitellida (29) | | | | | +--Capitellidae (29) | | | | | +--Capitella teleta (29) | | | +--Rhizaria (6) | | | | | +--Foraminifera (6) | | | | | +--Reticulomyxidae (6) | | | | | +--Reticulomyxa filosa (6) | | | +--Viridiplantae (29) | | | | | +--Streptophyta (29) | | | | | +--Embryophyta (29) | | | | | +--Tracheophyta (29) | | | | | +--Spermatophyta (29) | | | | | +--Magnoliophyta (29) | | | | | +--Liliopsida (14) | | | | | | | +--Poales (14) | | | | | | | +--Poaceae (14) | | | | | | | +--BEPclade (14) | | | | | | | +--Ehrhartoideae (14) | | | | | | | +--Oryzeae (14) | | | | | | | +--Oryza sativa Indica Group (14) | | | | | +--eudicotyledons (15) | | | | | +--coreeudicotyledons (15) | | | | | +--asterids (15) | | | | | +--lamiids (15) | | | | | +--Gentianales (15) | | | | | +--Rubiaceae (15) | | | | | +--Ixoroideae (15) | | | | | +--Coffeeae (15) | | | | | +--Coffea canephora (15) | | | +--Opisthokonta (1) | | | +--Fungi (1) | | | +--Dikarya (1) | | | +--Ascomycota (1) | | | +--saccharomyceta (1) | | | +--Pezizomycotina (1) | | | +--leotiomyceta (1) | | | +--Eurotiomycetes (1) | | | +--Chaetothyriomycetidae (1) | | | +--Chaetothyriales (1) | | | +--Chaetothyriales sp. CBS 134916 (1) | +--methanotrophic endosymbiont of Bathymodiolus azoricus (Menez Gwen) (4) | +--methanotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev) (24) | +--Bacteria (15270) | | | +--Chrysiogenetes (39) | | | | | +--Chrysiogenales (39) | | | | | +--Chrysiogenaceae (39) | | | | | +--Desulfurispirillum indicum S5 (39) | | | +--Proteobacteria (8479) | | | | | +--Olavius sp. associated proteobacterium Delta 1 (122) | | | | | +--Alphaproteobacteria (37) | | | | | | | +--Rhodospirillales (14) | | | | | | | | | +--Acetobacteraceae (14) | | | | | | | | | +--Acetobacter (14) | | | | | | | | | +--Acetobacter orientalis 21F-2 (14) | | | | | | | +--Sphingomonadales (22) | | | | | | | | | +--Sphingomonadaceae (22) | | | | | | | | | +--Zymomonas mobilis subsp. mobilis ZM4 (22) | | | | | | | +--Rhodobacterales (1) | | | | | | | +--Rhodobacteraceae (1) | | | | | | | +--Roseovarius sp. B108 (1) | | | | | +--Deltaproteobacteria (115) | | | | | | | +--Desulfobacterales (115) | | | | | | | +--Desulfobulbaceae (115) | | | | | | | +--Desulfurivibrio alkaliphilus AHT2 (115) | | | | | +--delta/epsilonsubdivisions (235) | | | | | | | +--Epsilonproteobacteria (42) | | | | | | | | | +--Campylobacterales (42) | | | | | | | | | +--Helicobacteraceae (42) | | | | | | | | | +--Sulfurimonas hongkongensis (42) | | | | | | | +--Deltaproteobacteria (193) | | | | | | | +--Desulfarculales (53) | | | | | | | | | +--Desulfarculaceae (53) | | | | | | | | | +--Dethiosulfatarculus sandiegensis (53) | | | | | | | +--Desulfovibrionales (2) | | | | | | | | | +--Desulfovibrionaceae (2) | | | | | | | | | +--Desulfovibrio (2) | | | | | | | | | +--Desulfovibrio gigas DSM 1382 = ATCC 19364 (2) | | | | | | | +--Desulfobacterales (138) | | | | | | | +--Desulfobulbaceae (17) | | | | | | | | | +--Desulfobulbus sp. Tol-SR (17) | | | | | | | +--Desulfobacteraceae (121) | | | | | | | +--Desulfamplus magnetovallimortis (121) | | | | | +--Gammaproteobacteria (5576) | | | | | | | +--unclassifiedGammaproteobacteria (61) | | | | | | | | | +--Wohlfahrtiimonas (61) | | | | | | | | | +--Wohlfahrtiimonas chitiniclastica SH04 (61) | | | | | | | +--Pasteurellales (252) | | | | | | | | | +--Bisgaard Taxon 40 (44) | | | | | | | | | +--Pasteurellaceae (208) | | | | | | | | | +--Pasteurella multocida subsp. multocida str. Pm70 (37) | | | | | | | | | +--Gallibacterium salpingitidis (104) | | | | | | | | | +--Actinobacillus pleuropneumoniae serovar 5b str. L20 (25) | | | | | | | | | +--Bisgaardia hudsonensis (42) | | | | | | | +--Enterobacterales (131) | | | | | | | | | +--Yersiniaceae (83) | | | | | | | | | | | +--Rahnella (40) | | | | | | | | | | | | | +--Rahnella aquatilis CIP 78.65 = ATCC 33071 (40) | | | | | | | | | | | +--Chania (43) | | | | | | | | | | | +--Chania multitudinisentens RB-25 (43) | | | | | | | | | +--Enterobacteriaceae (14) | | | | | | | | | | | +--unclassifiedEnterobacteriaceae (14) | | | | | | | | | | | +--Enterobacteriaceae bacterium strain FGI 57 (14) | | | | | | | | | +--Hafniaceae (34) | | | | | | | | | +--Hafnia (34) | | | | | | | | | +--Hafnia alvei FB1 (34) | | | | | | | +--Aeromonadales (187) | | | | | | | | | +--Aeromonadaceae (169) | | | | | | | | | | | +--Tolumonas auensis DSM 9187 (92) | | | | | | | | | | | +--Oceanisphaera sp. V1-41 (77) | | | | | | | | | +--Succinivibrionaceae (18) | | | | | | | | | +--Ruminobacter amylophilus (18) | | | | | | | +--Orbales (48) | | | | | | | | | +--Orbaceae (48) | | | | | | | | | +--CandidatusSchmidhempelia (36) | | | | | | | | | | | +--Candidatus Schmidhempelia bombi str. Bimp (36) | | | | | | | | | +--Gilliamella apicola (12) | | | | | | | +--Cardiobacteriales (32) | | | | | | | | | +--Cardiobacteriaceae (32) | | | | | | | | | +--Suttonella ornithocola (24) | | | | | | | | | +--Dichelobacter nodosus VCS1703A (8) | | | | | | | +--Methylococcales (410) | | | | | | | | | +--Crenotrichaceae (44) | | | | | | | | | | | +--Crenothrix polyspora (44) | | | | | | | | | +--Methylococcaceae (366) | | | | | | | | | +--Methylomonas methanica MC09 (69) | | | | | | | | | +--Methylomonas sp. LWB (1) | | | | | | | | | +--Methylomicrobium album BG8 (119) | | | | | | | | | +--Methylococcaceae bacterium Sn10-6 (10) | | | | | | | | | +--Methylomonas sp. DH-1 (87) | | | | | | | | | +--Methylomonas lenta (13) | | | | | | | | | +--Methyloprofundus sedimenti (67) | | | | | | | +--Legionellales (70) | | | | | | | | | +--Legionellaceae (24) | | | | | | | | | | | +--Legionella londiniensis (9) | | | | | | | | | | | +--Legionella nautarum (12) | | | | | | | | | | | +--Legionella worsleiensis (3) | | | | | | | | | +--Coxiellaceae (1) | | | | | | | | | | | +--Coxiella burnetii RSA 493 (1) | | | | | | | | | +--Legionella-like amoebal pathogen CC99 (45) | | | | | | | +--Alteromonadales (437) | | | | | | | | | +--Colwelliaceae (103) | | | | | | | | | | | +--Thalassomonas actiniarum (1) | | | | | | | | | | | +--Thalassotalea sp. ND16A (102) | | | | | | | | | +--Pseudoalteromonadaceae (208) | | | | | | | | | | | +--Pseudoalteromonas citrea (58) | | | | | | | | | | | +--Pseudoalteromonas sp. A25 (42) | | | | | | | | | | | +--Pseudoalteromonas sp. Y2 (47) | | | | | | | | | | | +--Pseudoalteromonas ruthenica (61) | | | | | | | | | +--Idiomarinaceae bacterium AIT1 (74) | | | | | | | | | +--Shewanellaceae (5) | | | | | | | | | | | +--Shewanella fodinae (1) | | | | | | | | | | | +--Shewanella violacea DSS12 (4) | | | | | | | | | +--Psychromonadaceae (3) | | | | | | | | | | | +--Psychromonas ingrahamii 37 (3) | | | | | | | | | +--Alteromonadaceae (44) | | | | | | | | | +--Marinobacter sp. BSs20148 (1) | | | | | | | | | +--Marinobacterium nitratireducens (12) | | | | | | | | | +--Glaciecola sp. BSs20135 (31) | | | | | | | +--Celerinatantimonadaceae (11) | | | | | | | | | +--Celerinatantimonas diazotrophica (11) | | | | | | | +--Xanthomonadales (378) | | | | | | | | | +--Rhodanobacteraceae (27) | | | | | | | | | | | +--Dokdonella (27) | | | | | | | | | | | +--Dokdonella koreensis DS-123 (27) | | | | | | | | | +--Sinobacteraceae (82) | | | | | | | | | | | +--Hydrocarboniphaga daqingensis (82) | | | | | | | | | +--Xanthomonadaceae (266) | | | | | | | | | | | +--Xanthomonas (30) | | | | | | | | | | | | | +--Xanthomonas albilineans GPE PC73 (30) | | | | | | | | | | | +--Dokdonella sp. PYM5-11 (111) | | | | | | | | | | | +--Pseudoxanthomonas broegbernensis (47) | | | | | | | | | | | +--Ignatzschineria ureiclastica (77) | | | | | | | | | | | +--Pseudofulvimonas gallinarii (1) | | | | | | | | | +--Pseudomonas boreopolis (3) | | | | | | | +--Enterobacteriales (776) | | | | | | | | | +--Enterobacteriaceae (776) | | | | | | | | | +--Serratia fonticola (68) | | | | | | | | | +--Dickeya dadantii 3937 (38) | | | | | | | | | +--Shigella boydii CDC 3083-94 (1) | | | | | | | | | +--Leminorella richardii (7) | | | | | | | | | +--Serratia sp. ATCC 39006 (57) | | | | | | | | | +--Escherichia coli 55989 (1) | | | | | | | | | +--Pectobacterium atrosepticum SCRI1043 (41) | | | | | | | | | +--Escherichia coli E24377A (2) | | | | | | | | | +--Escherichia coli O157:H7 (1) | | | | | | | | | +--Escherichia coli K-12 (1) | | | | | | | | | +--Serratia rubidaea (26) | | | | | | | | | +--Biostraticola tofi (89) | | | | | | | | | +--Shigella dysenteriae Sd197 (1) | | | | | | | | | +--Escherichia coli O83:H1 str. NRG 857C (31) | | | | | | | | | +--Serratia odorifera DSM 4582 (1) | | | | | | | | | +--Shigella sonnei Ss046 (2) | | | | | | | | | +--Erwinia tasmaniensis (43) | | | | | | | | | +--Gibbsiella quercinecans (18) | | | | | | | | | +--Budvicia aquatica (60) | | | | | | | | | +--Enterobacter sp. 638 (37) | | | | | | | | | +--Enterobacter gergoviae (22) | | | | | | | | | +--Arsenophonus nasoniae (son-killer infecting Nasonia vitripennis) (11) | | | | | | | | | +--Escherichia coli HS (3) | | | | | | | | | +--Escherichia coli APEC O1 (12) | | | | | | | | | +--Escherichia coli BL21(DE3) (1) | | | | | | | | | +--Photorhabdus luminescens subsp. laumondii TTO1 (71) | | | | | | | | | +--Citrobacter koseri ATCC BAA-895 (3) | | | | | | | | | +--Escherichia coli CFT073 (1) | | | | | | | | | +--Shigella flexneri 2a str. 301 (2) | | | | | | | | | +--Yersinia pestis CO92 (18) | | | | | | | | | +--Cronobacter sakazakii ATCC BAA-894 (12) | | | | | | | | | +--Candidatus Erwinia dacicola (1) | | | | | | | | | +--Erwinia mallotivora (40) | | | | | | | | | +--Providencia stuartii (41) | | | | | | | | | +--Escherichia coli S88 (12) | | | | | | | | | +--Erwinia tracheiphila (1) | | | | | | | +--Oceanospirillales (997) | | | | | | | | | +--Oceanospirillum multiglobuliferum (89) | | | | | | | | | +--Oceanospirillum linum (1) | | | | | | | | | +--Marinomonas sp. HDW-15 (1) | | | | | | | | | +--Oceanospirillaceae (55) | | | | | | | | | | | +--Oleispira (1) | | | | | | | | | | | | | +--Oleispira antarctica RB-8 (1) | | | | | | | | | | | +--Marinomonas spartinae (53) | | | | | | | | | | | +--Thalassolituus (1) | | | | | | | | | | | +--Thalassolituus oleivorans MIL-1 (1) | | | | | | | | | +--Marinomonas pollencensis (90) | | | | | | | | | +--Pseudospirillum japonicum (154) | | | | | | | | | +--Oleiphilaceae (21) | | | | | | | | | | | +--Oleiphilus messinensis (21) | | | | | | | | | +--Hahellaceae (11) | | | | | | | | | | | +--Zooshikella ganghwensis (11) | | | | | | | | | +--Saccharospirillaceae (104) | | | | | | | | | | | +--Gynuella (104) | | | | | | | | | | | +--Gynuella sunshinyii YC6258 (104) | | | | | | | | | +--Halomonadaceae (372) | | | | | | | | | | | +--Halomonas halmophila (51) | | | | | | | | | | | +--Halotalea alkalilenta (134) | | | | | | | | | | | +--Halomonas (87) | | | | | | | | | | | | | +--Halomonas ilicicola DSM 19980 (40) | | | | | | | | | | | | | +--Halomonas anticariensis FP35 = DSM 16096 (47) | | | | | | | | | | | +--Kushneria sp. Z35 (4) | | | | | | | | | | | +--Kushneria marisflavi (4) | | | | | | | | | | | +--Zymobactergroup (71) | | | | | | | | | | | | | +--Zymobacter palmae (71) | | | | | | | | | | | +--Halomonas cerina (13) | | | | | | | | | | | +--Salinicola sp. MIT1003 (8) | | | | | | | | | +--Alcanivoracaceae (62) | | | | | | | | | | | +--Alcanivorax (62) | | | | | | | | | | | +--Alcanivorax dieselolei B5 (62) | | | | | | | | | +--Halomonadaceae bacterium PH27A (14) | | | | | | | | | +--Neptunomonas sp. LHW37 (23) | | | | | | | +--Pseudomonadales (359) | | | | | | | | | +--Pseudomonadaceae (164) | | | | | | | | | | | +--Pseudomonas sp. TTU2014-080ASC (42) | | | | | | | | | | | +--Pseudomonas fulva 12-X (12) | | | | | | | | | | | +--Pseudomonas japonica (46) | | | | | | | | | | | +--Azomonas agilis (18) | | | | | | | | | | | +--Azomonas macrocytogenes (13) | | | | | | | | | | | +--Pseudomonas agarici (33) | | | | | | | | | +--Moraxellaceae (195) | | | | | | | | | +--Moraxella atlantae (58) | | | | | | | | | +--Acinetobacter sp. ADP1 (25) | | | | | | | | | +--Acinetobacter sp. ANC 4558 (2) | | | | | | | | | +--Acinetobacter sp. CIP 102637 (8) | | | | | | | | | +--Moraxella osloensis (91) | | | | | | | | | +--Acinetobacter (11) | | | | | | | | | +--Acinetobacter guillouiae NIPH 991 (9) | | | | | | | | | +--Acinetobacter brisouii CIP 110357 (2) | | | | | | | +--Orbus hercynius (41) | | | | | | | +--Alkalimonas amylolytica (84) | | | | | | | +--Salinisphaerales (172) | | | | | | | | | +--Salinisphaeraceae (172) | | | | | | | | | +--Salinisphaera sp. MKB5 (84) | | | | | | | | | +--Salinisphaera (88) | | | | | | | | | +--Salinisphaera hydrothermalis C41B8 (88) | | | | | | | +--Vibrionales (185) | | | | | | | | | +--Vibrionaceae (185) | | | | | | | | | +--Vibrio nereis (3) | | | | | | | | | +--Vibrio palustris (22) | | | | | | | | | +--Vibrio navarrensis (103) | | | | | | | | | +--Photobacterium profundum SS9 (27) | | | | | | | | | +--Salinivibrio sp. KP-1 (3) | | | | | | | | | +--Vibrio (27) | | | | | | | | | +--Vibrio aerogenes CECT 7868 (27) | | | | | | | +--Cellvibrionales (47) | | | | | | | | | +--Spongiibacteraceae (47) | | | | | | | | | +--gamma proteobacterium BDW918 (47) | | | | | | | +--Thiotrichales (313) | | | | | | | | | +--Thiotrichaceae (195) | | | | | | | | | | | +--Thiothrix unzii (13) | | | | | | | | | | | +--Thiothrix eikelboomii (182) | | | | | | | | | +--Piscirickettsiaceae (118) | | | | | | | | | +--Cycloclasticus sp. symbiont of Poecilosclerida sp. N (50) | | | | | | | | | +--Methylophaga sp. JAM7 (68) | | | | | | | +--Chromatiales (585) | | | | | | | +--Ectothiorhodospiraceae (53) | | | | | | | | | +--Aquisalimonas asiatica (48) | | | | | | | | | +--Alkalilimnicola ehrlichii (5) | | | | | | | +--Chromatiaceae (333) | | | | | | | | | +--Thiobaca trueperi (92) | | | | | | | | | +--Candidatus Tenderia electrophaga (71) | | | | | | | | | +--Thiocapsa imhoffii (14) | | | | | | | | | +--Lamprobacter modestohalophilus (113) | | | | | | | | | +--Thiocystis violascens DSM 198 (1) | | | | | | | | | +--Arsukibacterium sp. MJ3 (3) | | | | | | | | | +--Nitrosococcus oceani ATCC 19707 (7) | | | | | | | | | +--Nitrosococcus halophilus Nc4 (32) | | | | | | | +--Chromatiaceae bacterium RW (57) | | | | | | | +--Ectothiorhodospiraceae bacterium Su4 (142) | | | | | +--Bathymodiolus platifrons methanotrophic gill symbiont (1) | | | | | +--Betaproteobacteria (2298) | | | | | | | +--Burkholderiales (1526) | | | | | | | | | +--Alcaligenaceae (117) | | | | | | | | | | | +--Taylorella asinigenitalis MCE3 (49) | | | | | | | | | | | +--Castellaniella (68) | | | | | | | | | | | +--Castellaniella defragrans 65Phen (68) | | | | | | | | | +--Sphaerotilus hippei (130) | | | | | | | | | +--Alcaligenaceae bacterium BZ59 (73) | | | | | | | | | +--Burkholderiaceae (75) | | | | | | | | | | | +--Burkholderia (45) | | | | | | | | | | | | | +--Burkholderia glumae PG1 (45) | | | | | | | | | | | +--Burkholderia sp. PO-04-17-38 (2) | | | | | | | | | | | +--Burkholderia glumae BGR1 (6) | | | | | | | | | | | +--Burkholderia sp. Leaf177 (22) | | | | | | | | | +--unclassifiedBurkholderiales (1) | | | | | | | | | | | +--BurkholderialesGeneraincertaesedis (1) | | | | | | | | | | | +--Ideonella sakaiensis (1) | | | | | | | | | +--Oxalobacteraceae (47) | | | | | | | | | | | +--Oxalobacter formigenes OXCC13 (47) | | | | | | | | | +--Comamonadaceae (1083) | | | | | | | | | +--Lampropedia cohaerens (148) | | | | | | | | | +--CandidatusSymbiobacter (24) | | | | | | | | | | | +--Candidatus Symbiobacter mobilis CR (24) | | | | | | | | | +--Simplicispira metamorpha (67) | | | | | | | | | +--Comamonas sp. SP35 (3) | | | | | | | | | +--Comamonas denitrificans (99) | | | | | | | | | +--Giesbergeria anulus (43) | | | | | | | | | +--Delftia acidovorans SPH-1 (59) | | | | | | | | | +--Acidovorax temperans (1) | | | | | | | | | +--Lampropedia (136) | | | | | | | | | | | +--Lampropedia hyalina DSM 16112 (136) | | | | | | | | | +--Diaphorobacter sp. J5-51 (112) | | | | | | | | | +--Malikia granosa (98) | | | | | | | | | +--Verminephrobacter eiseniae EF01-2 (293) | | | | | | | +--Rhodocyclales (3) | | | | | | | | | +--Rhodocyclaceae (3) | | | | | | | | | +--Thauera (1) | | | | | | | | | | | +--Thauera linaloolentis 47Lol = DSM 12138 (1) | | | | | | | | | +--Azoarcus indigens (2) | | | | | | | +--Neisseriales (332) | | | | | | | | | +--Chromobacteriaceae (102) | | | | | | | | | | | +--Aquaspirillum sp. LM1 (60) | | | | | | | | | | | +--Chromobacteriumgroup (20) | | | | | | | | | | | | | +--Chromobacterium sp. LK11 (20) | | | | | | | | | | | +--Andreprevotia (22) | | | | | | | | | | | +--Andreprevotia lacus DSM 23236 (22) | | | | | | | | | +--Neisseriaceae (230) | | | | | | | | | +--Silvimonas terrae (1) | | | | | | | | | +--Chromobacterium violaceum ATCC 12472 (27) | | | | | | | | | +--Vitreoscilla sp. C1 (6) | | | | | | | | | +--Neisseria sp. oral taxon 014 str. F0314 (58) | | | | | | | | | +--Laribacter hongkongensis HLHK9 (1) | | | | | | | | | +--Vitreoscilla filiformis (129) | | | | | | | | | +--Crenobacter luteus (8) | | | | | | | +--Nitrosomonadales (437) | | | | | | | +--Nitrosomonadaceae (437) | | | | | | | +--Nitrosospira sp. Nsp1 (40) | | | | | | | +--Nitrosomonas sp. Nm58 (16) | | | | | | | +--Nitrosovibrio tenuis (60) | | | | | | | +--Nitrosomonas nitrosa (101) | | | | | | | +--Nitrosomonas (37) | | | | | | | | | +--Nitrosomonas cryotolerans ATCC 49181 (37) | | | | | | | +--Nitrosomonas aestuarii (68) | | | | | | | +--Nitrosomonas sp. Nm51 (115) | | | | | +--gamma proteobacterium HRh1 (95) | | | +--Planctomycetes (30) | | | | | +--Planctomycetacia (30) | | | | | +--Planctomycetales (30) | | | | | +--Planctomycete LF1 (30) | | | +--Campylobacterota (25) | | | | | +--Epsilonproteobacteria (25) | | | | | +--Campylobacterales (25) | | | | | +--Sulfurovaceae (25) | | | | | +--Sulfurovum (25) | | | | | +--Sulfurovum sp. UBA12169 (25) | | | +--Myxococcota (87) | | | | | +--Myxococcia (87) | | | | | +--Myxococcales (87) | | | | | +--Sorangiineae (87) | | | | | +--Sorangiineae bacterium NIC37A_2 (87) | | | +--Spirochaetes (83) | | | | | +--Spirochaetia (49) | | | | | | | +--Spirochaetales (49) | | | | | | | +--Spirochaetaceae (49) | | | | | | | +--Spirochaeta (49) | | | | | | | +--Spirochaeta africana DSM 8902 (49) | | | | | +--Spirochaetales (34) | | | | | +--Spirochaetaceae (34) | | | | | +--Spirochaeta coccoides DSM 17374 (33) | | | | | +--Spirochaeta sp. P (1) | | | +--Firmicutes (93) | | | | | +--Negativicutes (31) | | | | | | | +--Selenomonadales (31) | | | | | | | +--Veillonellaceae (31) | | | | | | | +--Megasphaera sp. BV3C16-1 (2) | | | | | | | +--Megasphaera elsdenii DSM 20460 (29) | | | | | +--Lactobacillales (62) | | | | | +--Carnobacteriaceae (62) | | | | | +--Agitococcus lubricus (62) | | | +--Pseudomonadota (5992) | | | | | +--Acidithiobacillia (2) | | | | | | | +--Acidithiobacillales (2) | | | | | | | +--Acidithiobacillaceae (2) | | | | | | | +--Acidithiobacillus sulfuriphilus (2) | | | | | +--Alphaproteobacteria (43) | | | | | | | +--Rhodospirillales (43) | | | | | | | +--Acetobacteraceae (43) | | | | | | | +--Formicincola oecophyllae (22) | | | | | | | +--Acetobacteraceae bacterium (21) | | | | | +--Proteobacteria bacterium 228 (74) | | | | | +--Gammaproteobacteria (3735) | | | | | | | +--Enterobacterales (414) | | | | | | | | | +--Yersiniaceae (21) | | | | | | | | | | | +--Chimaeribacter arupi (21) | | | | | | | | | +--Pectobacteriaceae (71) | | | | | | | | | | | +--Affinibrenneria salicis (71) | | | | | | | | | +--Morganellaceae (1) | | | | | | | | | | | +--Arsenophonus (1) | | | | | | | | | | | +--Arsenophonus endosymbiont of Aleurodicus floccissimus (1) | | | | | | | | | +--Enterobacteriaceae (94) | | | | | | | | | | | +--Jejubacter calystegiae (9) | | | | | | | | | | | +--Citrobacter (31) | | | | | | | | | | | | | +--Citrobacter sp. JGM124 (31) | | | | | | | | | | | +--Enterobacteriaceae bacterium RIT714 (52) | | | | | | | | | | | +--Tenebrionibacter/Tenebrionicolagroup (2) | | | | | | | | | | | +--Tenebrionibacter intestinalis (2) | | | | | | | | | +--Erwiniaceae (199) | | | | | | | | | | | +--Pantoea alhagi (3) | | | | | | | | | | | +--Izhakiella capsodis (42) | | | | | | | | | | | +--Erwinia sorbitola (84) | | | | | | | | | | | +--Erwiniaceae bacterium PD-1 (34) | | | | | | | | | | | +--Erwinia (3) | | | | | | | | | | | | | +--Erwinia sp. 198 (3) | | | | | | | | | | | +--[Pantoea] beijingensis (33) | | | | | | | | | +--Enterobacterales bacterium CwR94 (26) | | | | | | | | | +--Bruguierivoracaceae (2) | | | | | | | | | +--Sodalis ligni (2) | | | | | | | +--Aeromonadales (29) | | | | | | | | | +--Aeromonadaceae (29) | | | | | | | | | +--Oceanisphaera avium (29) | | | | | | | +--Orbales (5) | | | | | | | | | +--Orbaceae (5) | | | | | | | | | +--Zophobihabitans entericus (5) | | | | | | | +--Moraxellales (132) | | | | | | | | | +--Moraxellaceae (132) | | | | | | | | | +--Psychrobacter piechaudii (47) | | | | | | | | | +--Acinetobacter defluvii (69) | | | | | | | | | +--Moraxellaceae bacterium (16) | | | | | | | +--Cardiobacteriales (41) | | | | | | | | | +--Ostreibacteriaceae (41) | | | | | | | | | +--Ostreibacterium oceani (41) | | | | | | | +--Methylococcales (323) | | | | | | | | | +--Methylococcaceae (323) | | | | | | | | | +--Methylomonas paludis (81) | | | | | | | | | +--Methyloprofundus (62) | | | | | | | | | | | +--Methyloprofundus sp. (62) | | | | | | | | | +--Methylomonas (27) | | | | | | | | | | | +--Methylomonas sp. LL1 (27) | | | | | | | | | +--Candidatus Methylobacter titanis (47) | | | | | | | | | +--Candidatus Methylospira mobilis (40) | | | | | | | | | +--Methylovulum psychrotolerans (66) | | | | | | | +--Legionellales (7) | | | | | | | | | +--Legionellaceae (7) | | | | | | | | | +--Legionella septentrionalis (7) | | | | | | | +--Alteromonadales (505) | | | | | | | | | +--Ferrimonadaceae (1) | | | | | | | | | | | +--Ferrimonas sediminicola (1) | | | | | | | | | +--Colwelliaceae (103) | | | | | | | | | | | +--Colwellia (36) | | | | | | | | | | | | | +--Colwellia sp. C1TZA3 (36) | | | | | | | | | | | +--Colwellia ponticola (34) | | | | | | | | | | | +--Thalassotalea euphylliae (33) | | | | | | | | | +--Pseudoalteromonadaceae (80) | | | | | | | | | | | +--Pseudoalteromonas (80) | | | | | | | | | | | +--Pseudoalteromonas sp. NBT06-2 (6) | | | | | | | | | | | +--Pseudoalteromonas denitrificans DSM 6059 (26) | | | | | | | | | | | +--Pseudoalteromonas luteoviolacea DSM 6061 (48) | | | | | | | | | +--Echinimonadaceae (2) | | | | | | | | | | | +--Echinimonas agarilytica (2) | | | | | | | | | +--Shewanellaceae (123) | | | | | | | | | | | +--Shewanella salipaludis (1) | | | | | | | | | | | +--Shewanella (122) | | | | | | | | | | | +--Shewanella sp. SNU WT4 (122) | | | | | | | | | +--Alteromonadaceae (196) | | | | | | | | | +--Paraglaciecola (47) | | | | | | | | | | | +--Paraglaciecola sp. MB-3u-78 (47) | | | | | | | | | +--Saccharobesus litoralis (26) | | | | | | | | | +--Glaciecola (73) | | | | | | | | | | | +--Glaciecola sp. (strain KUL10) (73) | | | | | | | | | +--Alteromonas/Salinimonasgroup (24) | | | | | | | | | | | +--Salinimonas iocasae (23) | | | | | | | | | | | +--Alteromonas pelagimontana (1) | | | | | | | | | +--Agaribacter marinus (26) | | | | | | | +--Salinisphaerales (175) | | | | | | | | | +--Salinisphaeraceae (175) | | | | | | | | | +--Salinisphaera (175) | | | | | | | | | +--Salinisphaera japonica YTM-1 (91) | | | | | | | | | +--Salinisphaera sp. Q1T1-3 (84) | | | | | | | +--Vibrionales (176) | | | | | | | | | +--Vibrionaceae (176) | | | | | | | | | +--Vibrio paucivorans (1) | | | | | | | | | +--Candidatus Enterovibrio escacola (4) | | | | | | | | | +--Vibrio (171) | | | | | | | | | +--Vibrio sp. V28_P6S34P95 (63) | | | | | | | | | +--Vibrio sp. HA2012 (68) | | | | | | | | | +--Vibrio ruber DSM 16370 (3) | | | | | | | | | +--Vibrio sp. 10N.286.49.B3 (37) | | | | | | | +--Cellvibrionales (240) | | | | | | | | | +--Cellvibrionaceae (136) | | | | | | | | | | | +--Cellvibrio polysaccharolyticus (50) | | | | | | | | | | | +--Marinibactrum halimedae (86) | | | | | | | | | +--Halieaceae (104) | | | | | | | | | +--Sediminihaliea albiluteola (104) | | | | | | | +--Xanthomonadales (350) | | | | | | | | | +--Xanthomonadaceae (350) | | | | | | | | | +--Vulcaniibacterium tengchongense (65) | | | | | | | | | +--Vulcaniibacterium thermophilum (98) | | | | | | | | | +--Xanthomonadaceae bacterium NML03-0222 (35) | | | | | | | | | +--Lysobacter pythonis (20) | | | | | | | | | +--Pseudolysobacter antarcticus (132) | | | | | | | +--Chromatiales (222) | | | | | | | | | +--Ectothiorhodospiraceae (177) | | | | | | | | | | | +--Alkalilimnicola (74) | | | | | | | | | | | | | +--Alkalilimnicola sp. S0819 (74) | | | | | | | | | | | +--Thioalkalivibrio (103) | | | | | | | | | | | +--Thioalkalivibrio paradoxus ARh 1 (103) | | | | | | | | | +--Oceanococcaceae (45) | | | | | | | | | +--Abyssibacter profundi (45) | | | | | | | +--Thiotrichales (340) | | | | | | | | | +--Thiotrichaceae (340) | | | | | | | | | +--Leucothrix pacifica (126) | | | | | | | | | +--Candidatus Venteria ishoeyi (180) | | | | | | | | | +--Leucothrix arctica (34) | | | | | | | +--Oceanospirillales (605) | | | | | | | | | +--Oleiphilaceae (1) | | | | | | | | | | | +--Oleiphilus (1) | | | | | | | | | | | +--Oleiphilus sp. HI0043 (1) | | | | | | | | | +--Endozoicomonadaceae (1) | | | | | | | | | | | +--Endozoicomonas (1) | | | | | | | | | | | +--Endozoicomonas sp. G2_1 (1) | | | | | | | | | +--Halomonadaceae (87) | | | | | | | | | | | +--Pistricoccus aurantiacus (87) | | | | | | | | | +--Oceanospirillalesincertaesedis (150) | | | | | | | | | | | +--Pelagibaculum spongiae (150) | | | | | | | | | +--Oceanospirillaceae (335) | | | | | | | | | | | +--Maribrevibacterium harenarium (3) | | | | | | | | | | | +--Thalassolituus (33) | | | | | | | | | | | | | +--Thalassolituus sp. C2-1 (33) | | | | | | | | | | | +--Parathalassolituus penaei (69) | | | | | | | | | | | +--Nitrincola tibetensis (24) | | | | | | | | | | | +--Marinobacterium (21) | | | | | | | | | | | | | +--Marinobacterium iners DSM 11526 (21) | | | | | | | | | | | +--Litoribrevibacter albus (73) | | | | | | | | | | | +--Marinobacterium marinum (112) | | | | | | | | | +--Zooshikellaceae (31) | | | | | | | | | +--Spartinivicinus marinus (31) | | | | | | | +--Pseudomonadales (171) | | | | | | | +--Pseudomonadaceae (171) | | | | | | | +--Thiopseudomonas denitrificans (1) | | | | | | | +--Pseudomonas kuykendallii (1) | | | | | | | +--Halopseudomonas yangmingensis (52) | | | | | | | +--Pseudomonas (75) | | | | | | | | | +--Pseudomonas sp. GD03985 (50) | | | | | | | | | +--Pseudomonas sp. MRSN 12121 (25) | | | | | | | +--Pseudomonas carbonaria (42) | | | | | +--Betaproteobacteria (2093) | | | | | | | +--Burkholderiales (1496) | | | | | | | | | +--Alcaligenaceae (129) | | | | | | | | | | | +--Pigmentiphaga humi (37) | | | | | | | | | | | +--Verticiella sediminum (3) | | | | | | | | | | | +--Corticimicrobacter populi (24) | | | | | | | | | | | +--Achromobacter (65) | | | | | | | | | | | +--Achromobacter sp. AONIH1 (65) | | | | | | | | | +--Burkholderiaceae (77) | | | | | | | | | | | +--Caballeronia concitans (77) | | | | | | | | | +--Sphaerotilaceae (503) | | | | | | | | | | | +--Ideonella livida (94) | | | | | | | | | | | +--Azohydromonas caseinilytica (147) | | | | | | | | | | | +--Roseateles (156) | | | | | | | | | | | | | +--Paucibacter sp. KBW04 (156) | | | | | | | | | | | +--Ideonella aquatica (106) | | | | | | | | | +--Comamonadaceae (680) | | | | | | | | | | | +--Lampropedia puyangensis (12) | | | | | | | | | | | +--Oryzisolibacter propanilivorax (1) | | | | | | | | | | | +--Diaphorobacter ruginosibacter (41) | | | | | | | | | | | +--Variovorax (20) | | | | | | | | | | | | | +--Variovorax sp. PDC80 (20) | | | | | | | | | | | +--Melaminivora alkalimesophila (31) | | | | | | | | | | | +--Variovorax terrae (160) | | | | | | | | | | | +--Corticibacter populi (19) | | | | | | | | | | | +--Curvibacter (227) | | | | | | | | | | | | | +--Curvibacter sp. AEP1-3 (227) | | | | | | | | | | | +--Simplicispira hankyongi (42) | | | | | | | | | | | +--Ottowia oryzae (127) | | | | | | | | | +--Oxalobacteraceae (107) | | | | | | | | | +--Undibacterium fentianense (107) | | | | | | | +--Rhodocyclales (282) | | | | | | | | | +--Rhodocyclaceae (33) | | | | | | | | | | | +--Azospira (11) | | | | | | | | | | | | | +--Azospira sp. I13 (11) | | | | | | | | | | | +--Azospira inquinata (22) | | | | | | | | | +--Zoogloeaceae (249) | | | | | | | | | +--Pseudothauera nasutitermitis (82) | | | | | | | | | +--Pseudothauera lacus (133) | | | | | | | | | +--Pseudothauera rhizosphaerae (34) | | | | | | | +--Neisseriales (315) | | | | | | | +--Leeiaceae (77) | | | | | | | | | +--Leeia aquatica (77) | | | | | | | +--Chromobacteriaceae (22) | | | | | | | | | +--Paludibacterium paludis (22) | | | | | | | +--Neisseriaceae (216) | | | | | | | +--Paralysiella testudinis (147) | | | | | | | +--Craterilacuibacter sinensis (69) | | | | | +--Hydrogenophilia (45) | | | | | +--Hydrogenophilaliaincertaesedis (45) | | | | | +--Pelomicrobium methylotrophicum (45) | | | +--Chlamydiae (1) | | | | | +--Chlamydiales (1) | | | | | +--Waddliaceae (1) | | | | | +--Waddlia chondrophila WSU 86-1044 (1) | | | +--Deferribacterota (54) | | | | | +--Deferribacteres (54) | | | | | +--Deferribacterales (54) | | | | | +--Geovibrionaceae (54) | | | | | +--Seleniivibrio woodruffii (54) | | | +--PVCgroup (1) | | | | | +--Planctomycetota (1) | | | | | +--Planctomycetes bacterium CA13 (1) | | | +--Terrabacteriagroup (128) | | | | | +--Cyanobacteriota/Melainabacteriagroup (11) | | | | | | | +--CandidatusMargulisiibacteriota (11) | | | | | | | +--CandidatusMarinamargulisbacteria (11) | | | | | | | +--Candidatus Marinamargulisbacteria bacterium SCGC AAA071-K20 (11) | | | | | +--Bacillota (73) | | | | | | | +--Negativicutes (73) | | | | | | | +--Selenomonadales (26) | | | | | | | | | +--Sporomusaceae (1) | | | | | | | | | | | +--Sporomusaceae bacterium (1) | | | | | | | | | +--Selenomonadaceae (25) | | | | | | | | | +--Selenomonas (25) | | | | | | | | | +--Selenomonas sp. mPRGC5 (25) | | | | | | | +--Veillonellales (47) | | | | | | | +--Veillonellaceae (47) | | | | | | | +--Megasphaera (47) | | | | | | | +--Megasphaera sp. An286 (15) | | | | | | | +--Megasphaera sp. AM44-1BH (32) | | | | | +--Firmicutes (44) | | | | | +--Negativicutes (44) | | | | | +--Veillonellales (44) | | | | | +--Veillonellaceae (44) | | | | | +--Veillonella (5) | | | | | | | +--Veillonella montpellierensis DNF00314 (5) | | | | | +--Anaeroglobus (1) | | | | | | | +--Anaeroglobus geminatus F0357 (1) | | | | | +--Dialister (38) | | | | | +--Dialister sp. CAG:357 (2) | | | | | +--Dialister succinatiphilus YIT 11850 (1) | | | | | +--Dialister invisus CAG:218 (35) | | | +--Chlorobi (110) | | | | | +--Chlorobia (110) | | | | | +--Chlorobiales (110) | | | | | +--Chlorobiaceae (110) | | | | | +--Chlorobium/Pelodictyongroup (110) | | | | | +--Chlorobium ferrooxidans DSM 13031 (110) | | | +--Deferribacteres (129) | | | | | +--Deferribacterales (129) | | | | | +--Deferribacteraceae (129) | | | | | +--Geovibrio thiophilus (129) | | | +--FCBgroup (19) | | | +--Bacteroidota/Chlorobiotagroup (19) | | | +--Chlorobiota (19) | | | +--Chlorobiia (19) | | | +--Chlorobiales (19) | | | +--Chlorobiaceae (19) | | | +--Chlorobium/Pelodictyongroup (19) | | | +--Chlorobium (19) | | | +--Chlorobium sp. (19) | +--Viruses (1) | +--Duplodnaviria (1) | +--Heunggongvirae (1) | +--Uroviricota (1) | +--Caudoviricetes (1) | +--Detrevirus (1) | +--Pseudomonas phage vB_PaS_IME307 (1)