# Species tree for RF00558 # Generated from Rfam version 14.10 | +--Bacteria (505) | +--Actinobacteria (1) | | | +--Actinobacteridae (1) | | | +--Actinomycetales (1) | | | +--Corynebacterineae (1) | | | +--Mycobacteriaceae (1) | | | +--Mycobacterium abscessus (1) | +--Tenericutes (1) | | | +--Mollicutes (1) | | | +--Acholeplasmatales (1) | | | +--Acholeplasmataceae (1) | | | +--Acholeplasma brassicae (1) | +--low GC Gram-positive bacterium strain AHT28 (1) | +--Fusobacteria (1) | | | +--Fusobacteriales (1) | | | +--Fusobacteriaceae (1) | | | +--Ilyobacter polytropus DSM 2926 (1) | +--Terrabacteriagroup (266) | | | +--Tenericutes (1) | | | | | +--Tenericutes bacterium 4572_104 (1) | | | +--Actinobacteria (2) | | | | | +--Actinobacteria (2) | | | | | +--Streptomycetales (1) | | | | | | | +--Streptomycetaceae (1) | | | | | | | +--Streptomyces sp. WAC00263 (1) | | | | | +--Corynebacteriales (1) | | | | | +--Mycobacteriaceae (1) | | | | | +--Mycobacterium (1) | | | | | +--Mycobacteriumchelonaegroup (1) | | | | | +--Mycobacteriumabscessussubgroup (1) | | | | | +--Mycobacterium abscessus subsp. abscessus (1) | | | +--Firmicutes (263) | | | +--Clostridia (48) | | | | | +--Thermoanaerobacterales (2) | | | | | | | +--Thermoanaerobacteraceae (1) | | | | | | | | | +--Moorellagroup (1) | | | | | | | | | +--Moorella sp. 60_41 (1) | | | | | | | +--ThermoanaerobacteralesFamilyIII.IncertaeSedis (1) | | | | | | | +--Thermoanaerobacterium (1) | | | | | | | +--Thermoanaerobacterium saccharolyticum JW/SL-YS485 (1) | | | | | +--unclassifiedClostridia (1) | | | | | | | +--Clostridia bacterium BRH_c25 (1) | | | | | +--Clostridiales (45) | | | | | +--Ruminococcaceae (1) | | | | | | | +--Ruminiclostridium (1) | | | | | | | +--[Clostridium] clariflavum DSM 19732 (1) | | | | | +--Clostridialesincertaesedis (1) | | | | | | | +--ClostridialesFamilyXIII.IncertaeSedis (1) | | | | | | | +--Eubacterium brachy ATCC 33089 (1) | | | | | +--unclassifiedClostridiales (4) | | | | | | | +--Proteiniborus sp. DW1 (1) | | | | | | | +--Epulopiscium sp. SCG-C07WGA-EpuloA2 (1) | | | | | | | +--Clostridiales bacterium KA00134 (1) | | | | | | | +--unclassifiedClostridiales(miscellaneous) (1) | | | | | | | +--Clostridiales bacterium oral taxon 876 str. F0540 (1) | | | | | +--Peptococcaceae (12) | | | | | | | +--Desulfosporosinus (1) | | | | | | | | | +--Desulfosporosinus lacus DSM 15449 (1) | | | | | | | +--Desulfitobacterium (1) | | | | | | | | | +--Desulfitobacterium dichloroeliminans LMG P-21439 (1) | | | | | | | +--Desulfonispora (1) | | | | | | | | | +--Desulfonispora thiosulfatigenes DSM 11270 (1) | | | | | | | +--Desulfotomaculum (3) | | | | | | | | | +--Desulfotomaculum putei DSM 12395 (1) | | | | | | | | | +--Desulfotomaculum hydrothermale Lam5 = DSM 18033 (1) | | | | | | | | | +--Desulfotomaculum aeronauticum DSM 10349 (1) | | | | | | | +--Desulfosporosinus sp. OL (1) | | | | | | | +--Desulfosporosinus sp. I2 (1) | | | | | | | +--Desulfosporosinus sp. BRH_c37 (1) | | | | | | | +--Desulfosporosinus sp. Tol-M (1) | | | | | | | +--Desulfotomaculum ferrireducens (1) | | | | | | | +--Peptococcaceae bacterium BRH_c23 (1) | | | | | +--Peptostreptococcaceae (2) | | | | | | | +--unclassifiedPeptostreptococcaceae (2) | | | | | | | +--Peptostreptococcaceae bacterium oral taxon 113 str. W5053 (1) | | | | | | | +--[Clostridium] paradoxum JW-YL-7 = DSM 7308 (1) | | | | | +--Eubacteriaceae (1) | | | | | | | +--Garciella (1) | | | | | | | +--Garciella nitratireducens DSM 15102 (1) | | | | | +--Clostridiaceae (24) | | | | | +--Clostridium sp. BL8 (1) | | | | | +--Clostridium (13) | | | | | | | +--Clostridium acidisoli DSM 12555 (1) | | | | | | | +--Clostridium cavendishii DSM 21758 (1) | | | | | | | +--Clostridium argentinense CDC 2741 (1) | | | | | | | +--Clostridium sp. CAG:1024 (1) | | | | | | | +--Clostridium intestinale URNW (1) | | | | | | | +--Clostridium acetireducens DSM 10703 (1) | | | | | | | +--Clostridium tepidiprofundi DSM 19306 (1) | | | | | | | +--Clostridium grantii DSM 8605 (1) | | | | | | | +--Clostridium magnum DSM 2767 (1) | | | | | | | +--Clostridium tyrobutyricum DIVETGP (1) | | | | | | | +--Clostridium tetanomorphum DSM 665 (1) | | | | | | | +--Clostridium pasteurianum DSM 525 = ATCC 6013 (1) | | | | | | | +--Clostridium cylindrosporum DSM 605 (1) | | | | | +--Clostridium sp. USBA 49 (1) | | | | | +--Thermobrachium (1) | | | | | | | +--Thermobrachium celere DSM 8682 (1) | | | | | +--Caloramator quimbayensis (1) | | | | | +--Hathewaya (1) | | | | | | | +--Hathewaya proteolytica DSM 3090 (1) | | | | | +--Clostridium amylolyticum (1) | | | | | +--Fervidicella (1) | | | | | | | +--Fervidicella metallireducens AeB (1) | | | | | +--Clostridium tepidum (1) | | | | | +--Clostridium sp. HMP27 (1) | | | | | +--Clostridiaceae bacterium BRH_c20a (1) | | | | | +--Caloranaerobacter (1) | | | | | +--Caloranaerobacter azorensis H53214 (1) | | | +--Firmicutes bacterium CAG:238 (1) | | | +--Bacilli (199) | | | | | +--Lactobacillales (99) | | | | | | | +--Carnobacteriaceae (3) | | | | | | | | | +--Carnobacterium (3) | | | | | | | | | +--Carnobacterium inhibens subsp. gilichinskyi (1) | | | | | | | | | +--Carnobacterium maltaromaticum LMA28 (1) | | | | | | | | | +--Carnobacterium divergens DSM 20623 (1) | | | | | | | +--Leuconostocaceae (1) | | | | | | | | | +--Fructobacillus sp. EFB-N1 (1) | | | | | | | +--Streptococcaceae (21) | | | | | | | | | +--Streptococcus cuniculi (1) | | | | | | | | | +--Streptococcus sp. DD10 (1) | | | | | | | | | +--Streptococcus pantholopis (1) | | | | | | | | | +--Streptococcus sp. DD13 (1) | | | | | | | | | +--Streptococcus (9) | | | | | | | | | | | +--Streptococcus agalactiae LMG 14747 (1) | | | | | | | | | | | +--Streptococcus lutetiensis 033 (1) | | | | | | | | | | | +--Streptococcus sobrinus W1703 (1) | | | | | | | | | | | +--Streptococcus pyogenes serotype M1 (1) | | | | | | | | | | | +--Streptococcusdysgalactiaegroup (1) | | | | | | | | | | | | | +--Streptococcusdysgalactiae (1) | | | | | | | | | | | | | +--Streptococcus dysgalactiae subsp. equisimilis RE378 (1) | | | | | | | | | | | +--Streptococcusanginosusgroup (1) | | | | | | | | | | | | | +--Streptococcus intermedius B196 (1) | | | | | | | | | | | +--Streptococcus ratti FA-1 = DSM 20564 (1) | | | | | | | | | | | +--Streptococcus iniae IUSA1 (1) | | | | | | | | | | | +--Streptococcus pneumoniae 2070335 (1) | | | | | | | | | +--Streptococcus sp. HSISM1 (1) | | | | | | | | | +--Streptococcus sp. DD12 (1) | | | | | | | | | +--Streptococcus sp. 'caviae' (1) | | | | | | | | | +--Streptococcus sp. HSISB1 (1) | | | | | | | | | +--Streptococcus varani (1) | | | | | | | | | +--Streptococcus sp. DD11 (1) | | | | | | | | | +--Streptococcus sp. DORA_10 (1) | | | | | | | | | +--Lactococcus (1) | | | | | | | | | +--Lactococcuslactis (1) | | | | | | | | | +--Lactococcus lactis subsp. cremoris TIFN6 (1) | | | | | | | +--Enterococcaceae (26) | | | | | | | | | +--Enterococcus sp. HSIEG1 (1) | | | | | | | | | +--Enterococcus sp. 9E7_DIV0242 (1) | | | | | | | | | +--Enterococcus sp. 7F3_DIV0205 (1) | | | | | | | | | +--Enterococcus sp. 6C8_DIV0013 (1) | | | | | | | | | +--Enterococcus (13) | | | | | | | | | | | +--Enterococcus dispar ATCC 51266 (1) | | | | | | | | | | | +--Enterococcus pallens ATCC BAA-351 (1) | | | | | | | | | | | +--Enterococcus durans ATCC 6056 (1) | | | | | | | | | | | +--Enterococcus columbae DSM 7374 = ATCC 51263 (1) | | | | | | | | | | | +--Enterococcus villorum ATCC 700913 (1) | | | | | | | | | | | +--Enterococcus mundtii QU 25 (1) | | | | | | | | | | | +--Enterococcus asini ATCC 700915 (1) | | | | | | | | | | | +--Enterococcussaccharolyticus (2) | | | | | | | | | | | | | +--Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 (2) | | | | | | | | | | | +--Enterococcus gilvus ATCC BAA-350 (1) | | | | | | | | | | | +--Enterococcus avium ATCC 14025 (1) | | | | | | | | | | | +--Enterococcus faecalis 13-SD-W-01 (1) | | | | | | | | | | | +--Enterococcus haemoperoxidus ATCC BAA-382 (1) | | | | | | | | | +--Enterococcus sp. 2G9_DIV0600 (1) | | | | | | | | | +--Enterococcus sp. 4G2_DIV0659 (1) | | | | | | | | | +--Enterococcus sp. RIT-PI-f (1) | | | | | | | | | +--Vagococcus (2) | | | | | | | | | | | +--Vagococcus fluvialis bH819 (1) | | | | | | | | | | | +--Vagococcus lutrae LBD1 (1) | | | | | | | | | +--Enterococcus sp. 3H8_DIV0648 (1) | | | | | | | | | +--Tetragenococcus (1) | | | | | | | | | | | +--Tetragenococcus muriaticus 3MR10-3 (1) | | | | | | | | | +--Enterococcus sp. 8G7_MSG3316 (1) | | | | | | | | | +--Enterococcus sp. 10A9_DIV0425 (1) | | | | | | | +--Lactobacillaceae (48) | | | | | | | +--Lactobacillus mixtipabuli (1) | | | | | | | +--Lactobacillus (41) | | | | | | | | | +--Lactobacillus kalixensis DSM 16043 (1) | | | | | | | | | +--Lactobacillus cacaonum DSM 21116 (1) | | | | | | | | | +--Lactobacillus kimchicus JCM 15530 (1) | | | | | | | | | +--Lactobacillus algidus DSM 15638 (1) | | | | | | | | | +--Lactobacillus florum 8D (1) | | | | | | | | | +--Lactobacillus frumenti DSM 13145 (1) | | | | | | | | | +--Lactobacillus concavus DSM 17758 (1) | | | | | | | | | +--Lactobacillus agilis DSM 20509 (1) | | | | | | | | | +--Lactobacillus buchneri CD034 (1) | | | | | | | | | +--Lactobacillus ozensis DSM 23829 = JCM 17196 (1) | | | | | | | | | +--Lactobacillus capillatus DSM 19910 (1) | | | | | | | | | +--Lactobacillus odoratitofui DSM 19909 = JCM 15043 (1) | | | | | | | | | +--Lactobacillus floricola DSM 23037 = JCM 16512 (1) | | | | | | | | | +--Lactobacillus oeni DSM 19972 (1) | | | | | | | | | +--Lactobacilluskefiranofaciens (1) | | | | | | | | | | | +--Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 (1) | | | | | | | | | +--Lactobacillus rossiae DSM 15814 (1) | | | | | | | | | +--Lactobacillus hayakitensis DSM 18933 = JCM 14209 (1) | | | | | | | | | +--Lactobacillus ghanensis DSM 18630 (1) | | | | | | | | | +--Lactobacillus lindneri DSM 20690 = JCM 11027 (1) | | | | | | | | | +--Lactobacillus parafarraginis F0439 (1) | | | | | | | | | +--Lactobacillus hominis DSM 23910 = CRBIP 24.179 (1) | | | | | | | | | +--Lactobacillus pontis DSM 8475 (1) | | | | | | | | | +--Lactobacillus fabifermentans T30PCM01 (1) | | | | | | | | | +--Lactobacillus oligofermentans DSM 15707 = LMG 22743 (1) | | | | | | | | | +--Lactobacillus oryzae JCM 18671 (1) | | | | | | | | | +--Lactobacillus apodemi DSM 16634 = JCM 16172 (1) | | | | | | | | | +--Lactobacillus gastricus PS3 (1) | | | | | | | | | +--Lactobacillus amylophilus DSM 20533 = JCM 1125 (1) | | | | | | | | | +--Lactobacillus similis DSM 23365 = JCM 2765 (1) | | | | | | | | | +--Lactobacillus silagei JCM 19001 (1) | | | | | | | | | +--Lactobacillus ceti DSM 22408 (1) | | | | | | | | | +--Lactobacillus diolivorans DSM 14421 (1) | | | | | | | | | +--Lactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 (1) | | | | | | | | | +--Lactobacillus pasteurii DSM 23907 = CRBIP 24.76 (1) | | | | | | | | | +--Lactobacillus saerimneri 30a (1) | | | | | | | | | +--Lactobacillus rennini DSM 20253 (1) | | | | | | | | | +--Lactobacillus dextrinicus DSM 20335 (1) | | | | | | | | | +--Lactobacillus panis DSM 6035 (1) | | | | | | | | | +--Lactobacillus mucosae LM1 (1) | | | | | | | | | +--Lactobacillus senioris DSM 24302 = JCM 17472 (1) | | | | | | | | | +--Lactobacillus vini DSM 20605 (1) | | | | | | | +--Lactobacillus curieae (1) | | | | | | | +--Pediococcus (1) | | | | | | | | | +--Pediococcus claussenii ATCC BAA-344 (1) | | | | | | | +--Lactobacillus mellifer (1) | | | | | | | +--Lactobacillus wasatchensis (1) | | | | | | | +--Lactobacillus sp. wkB8 (1) | | | | | | | +--Lactobacillus allii (1) | | | | | +--Bacillales (99) | | | | | | | +--Staphylococcaceae (7) | | | | | | | | | +--Staphylococcus sp. HMSC078E07 (1) | | | | | | | | | +--Staphylococcus sp. NAM3COL9 (1) | | | | | | | | | +--Staphylococcus sp. HGB0015 (1) | | | | | | | | | +--Staphylococcus (4) | | | | | | | | | +--Staphylococcus massiliensis S46 (1) | | | | | | | | | +--Staphylococcus pettenkoferi VCU012 (1) | | | | | | | | | +--Staphylococcus chromogenes MU 970 (1) | | | | | | | | | +--Staphylococcus aureus C0673 (1) | | | | | | | +--Planococcaceae (1) | | | | | | | | | +--Planococcus sp. PAMC 21323 (1) | | | | | | | +--Listeriaceae (4) | | | | | | | | | +--Listeria booriae (1) | | | | | | | | | +--Listeria (2) | | | | | | | | | | | +--Listeria floridensis FSL S10-1187 (1) | | | | | | | | | | | +--Listeria aquatica FSL S10-1188 (1) | | | | | | | | | +--Listeriaceae bacterium FSL A5-0209 (1) | | | | | | | +--Bacillaceae (75) | | | | | | | | | +--Bacillus glycinifermentans (1) | | | | | | | | | +--Bacillus sp. SGD-V-76 (1) | | | | | | | | | +--Bacillus sp. MRMR6 (1) | | | | | | | | | +--Halobacillus sp. BBL2006 (1) | | | | | | | | | +--Geobacillus sp. CAMR12739 (1) | | | | | | | | | +--Bacillus sp. JCM 19045 (1) | | | | | | | | | +--Bacillus sp. FJAT-27997 (1) | | | | | | | | | +--Bacillus campisalis (1) | | | | | | | | | +--Bacillus solimangrovi (1) | | | | | | | | | +--Anaerobacillus sp. NB2006 (1) | | | | | | | | | +--Bacillus sp. TS-2 (1) | | | | | | | | | +--Amphibacillus (1) | | | | | | | | | | | +--Amphibacillus xylanus NBRC 15112 (1) | | | | | | | | | +--Bacillus sp. LF1 (1) | | | | | | | | | +--Bacillus sp. CHD6a (1) | | | | | | | | | +--Bacillus sp. FJAT-27231 (1) | | | | | | | | | +--Paraliobacillus sp. PM-2 (1) | | | | | | | | | +--Virgibacillus massiliensis (1) | | | | | | | | | +--Bacillus xerothermodurans (1) | | | | | | | | | +--Domibacillus iocasae (1) | | | | | | | | | +--Quasibacillus thermotolerans (1) | | | | | | | | | +--Lysinibacillus (2) | | | | | | | | | | | +--Lysinibacillus manganicus DSM 26584 (1) | | | | | | | | | | | +--Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 (1) | | | | | | | | | +--Bacillus sp. FJAT-26390 (1) | | | | | | | | | +--Anoxybacillus sp. B7M1 (1) | | | | | | | | | +--Bacillus sp. SJS (1) | | | | | | | | | +--Bacillus sp. FJAT-18017 (1) | | | | | | | | | +--Domibacillus antri (1) | | | | | | | | | +--Pontibacillus (5) | | | | | | | | | | | +--Pontibacillus marinus BH030004 = DSM 16465 (1) | | | | | | | | | | | +--Pontibacillus chungwhensis BH030062 (1) | | | | | | | | | | | +--Pontibacillus litoralis JSM 072002 (1) | | | | | | | | | | | +--Pontibacillus yanchengensis Y32 (1) | | | | | | | | | | | +--Pontibacillus halophilus JSM 076056 = DSM 19796 (1) | | | | | | | | | +--[Bacillus] sp. KCTC 13219 (1) | | | | | | | | | +--Gracilibacillus (2) | | | | | | | | | | | +--Gracilibacillus boraciitolerans JCM 21714 (1) | | | | | | | | | | | +--Gracilibacillus halophilus YIM-C55.5 (1) | | | | | | | | | +--Bacillus sp. LL01 (1) | | | | | | | | | +--Bacillus sp. X1(2014) (1) | | | | | | | | | +--Bacillus sp. MUM 116 (1) | | | | | | | | | +--Salimicrobium jeotgali (1) | | | | | | | | | +--Virgibacillus sp. LM2416 (1) | | | | | | | | | +--Bacillus sp. OV166 (1) | | | | | | | | | +--Lentibacillus amyloliquefaciens (1) | | | | | | | | | +--Bacillus sp. FJAT-27916 (1) | | | | | | | | | +--Bacillus obstructivus (1) | | | | | | | | | +--Fictibacillus (1) | | | | | | | | | | | +--Fictibacillus macauensis ZFHKF-1 (1) | | | | | | | | | +--Bacillus sp. HMSC76G11 (1) | | | | | | | | | +--Bacillus sp. FJAT-27986 (1) | | | | | | | | | +--Bacillus nakamurai (1) | | | | | | | | | +--Bacillus sp. VT-16-64 (1) | | | | | | | | | +--Bacillus sp. FJAT-21945 (1) | | | | | | | | | +--Anoxybacillus sp. BCO1 (1) | | | | | | | | | +--Bacillus sp. FJAT-25509 (1) | | | | | | | | | +--Geobacillus sp. B4113_201601 (1) | | | | | | | | | +--Bacillus sp. FJAT-22058 (1) | | | | | | | | | +--Bacillus gobiensis (1) | | | | | | | | | +--Bacillus sp. MUM 13 (1) | | | | | | | | | +--Tepidibacillus decaturensis (1) | | | | | | | | | +--Halobacillus sp. BAB-2008 (1) | | | | | | | | | +--Bacillus (11) | | | | | | | | | | | +--Bacillus lehensis G1 (1) | | | | | | | | | | | +--Bacillus infantis NRRL B-14911 (1) | | | | | | | | | | | +--Bacillus selenatarsenatis SF-1 (1) | | | | | | | | | | | +--Bacillus akibai JCM 9157 (1) | | | | | | | | | | | +--Bacillus alcalophilus ATCC 27647 = CGMCC 1.3604 (1) | | | | | | | | | | | +--Bacillus wakoensis JCM 9140 (1) | | | | | | | | | | | +--Bacillus vireti LMG 21834 (1) | | | | | | | | | | | +--Bacillus hemicellulosilyticus JCM 9152 (1) | | | | | | | | | | | +--Bacillus coahuilensis p1.1.43 (1) | | | | | | | | | | | +--Bacillus azotoformans LMG 9581 (1) | | | | | | | | | | | +--Bacillus bataviensis LMG 21833 (1) | | | | | | | | | +--Bacillus weihaiensis (1) | | | | | | | | | +--Bacillus sp. B-jedd (1) | | | | | | | | | +--Parageobacillus (1) | | | | | | | | | | | +--Parageobacillus caldoxylosilyticus NBRC 107762 (1) | | | | | | | | | +--Bacillus enclensis (1) | | | | | | | | | +--Bacillus sp. SA1-12 (1) | | | | | | | | | +--Geobacillus sp. BCO2 (1) | | | | | | | +--Paenibacillaceae (8) | | | | | | | | | +--Paenibacillus swuensis (1) | | | | | | | | | +--Paenibacillus sp. Soil522 (1) | | | | | | | | | +--Paenibacillus sp. Soil750 (1) | | | | | | | | | +--Paenibacillus sp. FSL H8-0548 (1) | | | | | | | | | +--Paenibacillus oryzae (1) | | | | | | | | | +--Paenibacillus sp. FSL A5-0031 (1) | | | | | | | | | +--Paenibacillus sp. IHBB 10380 (1) | | | | | | | | | +--Aneurinibacillusgroup (1) | | | | | | | | | +--Aneurinibacillus sp. XH2 (1) | | | | | | | +--unclassifiedBacillales (1) | | | | | | | | | +--Desulfuribacillus stibiiarsenatis (1) | | | | | | | +--Sporolactobacillaceae (1) | | | | | | | | | +--Sporolactobacillus (1) | | | | | | | | | +--Sporolactobacillus laevolacticus DSM 442 (1) | | | | | | | +--Thermoactinomycetaceae (2) | | | | | | | +--Thermoactinomyces sp. Gus2-1 (1) | | | | | | | +--Thermoactinomyces sp. DSM 45891 (1) | | | | | +--unclassifiedBacilli (1) | | | | | +--Bacilli bacterium VT-13-104 (1) | | | +--Negativicutes (6) | | | | | +--Selenomonadales (3) | | | | | | | +--Sporomusaceae (3) | | | | | | | +--Pelosinus (1) | | | | | | | | | +--Pelosinus fermentans B4 (1) | | | | | | | +--Propionispora sp. 2/2-37 (1) | | | | | | | +--Sporomusa (1) | | | | | | | +--Sporomusa sphaeroides DSM 2875 (1) | | | | | +--Acidaminococcales (1) | | | | | | | +--Acidaminococcaceae (1) | | | | | | | +--Phascolarctobacterium sp. CAG:207 (1) | | | | | +--Veillonellales (2) | | | | | +--Veillonellaceae (2) | | | | | +--Dialister (1) | | | | | | | +--Dialister sp. CAG:357 (1) | | | | | +--Megasphaera (1) | | | | | +--Megasphaera cerevisiae DSM 20462 (1) | | | +--Tissierellia (4) | | | | | +--Tissierellales (3) | | | | | | | +--Sporanaerobacter sp. PP17-6a (1) | | | | | | | +--Tissierellaceae (1) | | | | | | | | | +--Tissierella (1) | | | | | | | | | +--Tissierella creatinophila DSM 6911 (1) | | | | | | | +--Peptoniphilaceae (1) | | | | | | | +--Peptoniphilus (1) | | | | | | | +--Peptoniphilus lacrimalis DNF00528 (1) | | | | | +--unclassifiedTissierellia (1) | | | | | +--[Clostridium] ultunense Esp (1) | | | +--Erysipelotrichia (5) | | | +--Erysipelotrichales (5) | | | +--Erysipelotrichaceae (5) | | | +--Turicibacter sp. H121 (1) | | | +--Candidatus Stoquefichus sp. KLE1796 (1) | | | +--Coprobacillus (3) | | | +--Coprobacillus sp. CAG:183 (1) | | | +--Coprobacillus sp. CAG:826 (1) | | | +--Coprobacillus sp. CAG:698 (1) | +--FCBgroup (1) | | | +--Bacteroidetes/Chlorobigroup (1) | | | +--Bacteroidetes (1) | | | +--Sphingobacteriia (1) | | | +--Sphingobacteriales (1) | | | +--Sphingobacteriaceae (1) | | | +--Sphingobacterium (1) | | | +--Sphingobacterium faecium PCAi_F2.5 (1) | +--Firmicutes (234) | +--Clostridia (46) | | | +--Thermoanaerobacterales (3) | | | | | +--Thermoanaerobacteraceae (3) | | | | | +--Thermoanaerobacter tengcongensis MB4 (1) | | | | | +--Carboxydothermus hydrogenoformans Z-2901 (1) | | | | | +--Thermoanaerobacter pseudethanolicus ATCC 33223 (1) | | | +--Natranaerobiales (1) | | | | | +--Natranaerobiaceae (1) | | | | | +--Natranaerobius trueperi (1) | | | +--Clostridiales (42) | | | +--Ruminococcaceae (1) | | | | | +--Bacteroides cellulosolvens ATCC 35603 (1) | | | +--Peptococcaceae (13) | | | | | +--Thermincola potens JR (1) | | | | | +--Desulfosporosinus meridiei DSM 13257 (1) | | | | | +--Syntrophobotulus glycolicus DSM 8271 (1) | | | | | +--Desulfotomaculum carboxydivorans CO-1-SRB (1) | | | | | +--Desulfosporosinus acidiphilus SJ4 (1) | | | | | +--Pelotomaculum thermopropionicum (1) | | | | | +--Desulfosporosinus orientis DSM 765 (1) | | | | | +--Desulfotomaculum ruminis DSM 2154 (1) | | | | | +--Desulfotomaculum reducens MI-1 (1) | | | | | +--Desulfotomaculum acetoxidans DSM 771 (1) | | | | | +--Desulfosporosinus youngiae DSM 17734 (1) | | | | | +--Desulfitobacterium metallireducens DSM 15288 (1) | | | | | +--Desulfosporosinus sp. OT (1) | | | +--Catabacteriaceae (1) | | | | | +--Catabacter hongkongensis (1) | | | +--ClostridialesFamilyXIII.IncertaeSedis (1) | | | | | +--Mogibacterium pumilum (1) | | | +--Christensenellaceae (1) | | | | | +--Christensenella minuta (1) | | | +--Eubacteriaceae (3) | | | | | +--Eubacterium limosum KIST612 (1) | | | | | +--Acetobacterium bakii (1) | | | | | +--Eubacterium sp. AS15b (1) | | | +--Clostridiaceae (22) | | | +--Clostridium pasteurianum BC1 (1) | | | +--Clostridium tetani E88 (1) | | | +--Clostridium botulinum D str. 1873 (1) | | | +--Clostridium carboxidivorans P7 (1) | | | +--Clostridium thermoalcaliphilum (1) | | | +--Clostridium estertheticum subsp. estertheticum (1) | | | +--Clostridium sp. 232.1 (1) | | | +--Clostridium acetobutylicum ATCC 824 (1) | | | +--Clostridium kluyveri DSM 555 (1) | | | +--Clostridium perfringens str. 13 (1) | | | +--Clostridium fallax (1) | | | +--Clostridium paraputrificum (1) | | | +--Caloramator australicus RC3 (1) | | | +--Clostridium sticklandii DSM 519 (1) | | | +--Clostridium sp. DMHC 10 (1) | | | +--Sarcina ventriculi (1) | | | +--Clostridium roseum (1) | | | +--Oxobacter pfennigii (1) | | | +--Clostridium botulinum A str. ATCC 3502 (1) | | | +--Clostridium sulfidigenes (1) | | | +--Caloramator mitchellensis (1) | | | +--Clostridium novyi NT (1) | +--Negativicutes (5) | | | +--Selenomonadales (5) | | | +--Acidaminococcaceae (1) | | | | | +--Phascolarctobacterium sp. YIT 12067 (1) | | | +--Veillonellaceae (4) | | | +--Thermosinus carboxydivorans Nor1 (1) | | | +--Pelosinus sp. UFO1 (1) | | | +--Megasphaera micronuciformis F0359 (1) | | | +--Megasphaera sp. UPII 135-E (1) | +--Lactobacillales (82) | | | +--Carnobacteriaceae (3) | | | | | +--Trichococcus sp. EX-07 (1) | | | | | +--Granulicatella elegans ATCC 700633 (1) | | | | | +--Granulicatella adiacens ATCC 49175 (1) | | | +--Streptococcaceae (26) | | | | | +--Streptococcus henryi (1) | | | | | +--Streptococcus parauberis NCFD 2020 (1) | | | | | +--Streptococcus phocae (1) | | | | | +--Streptococcus thermophilus LMG 18311 (1) | | | | | +--Streptococcus sp. oral taxon 056 str. F0418 (1) | | | | | +--Streptococcus pneumoniae R6 (1) | | | | | +--Streptococcus ictaluri 707-05 (1) | | | | | +--Lactococcus lactis subsp. lactis Il1403 (1) | | | | | +--Streptococcus infantis SK1302 (1) | | | | | +--Streptococcus uberis 0140J (1) | | | | | +--Streptococcus urinalis 2285-97 (1) | | | | | +--Streptococcus gallolyticus (1) | | | | | +--Streptococcus gordonii str. Challis substr. CH1 (1) | | | | | +--Streptococcus equi subsp. zooepidemicus (1) | | | | | +--Streptococcus agalactiae 2603V/R (1) | | | | | +--Lactococcus garvieae Lg2 (1) | | | | | +--Streptococcus mutans UA159 (1) | | | | | +--Streptococcus infantis SK970 (1) | | | | | +--Streptococcus macacae NCTC 11558 (1) | | | | | +--Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 (1) | | | | | +--Streptococcus pneumoniae SP6-BS73 (1) | | | | | +--Streptococcus sinensis (1) | | | | | +--Streptococcus sanguinis SK36 (1) | | | | | +--Streptococcus suis 05ZYH33 (1) | | | | | +--Streptococcus pseudoporcinus LQ 940-04 (1) | | | | | +--Streptococcus uberis (1) | | | +--Enterococcaceae (16) | | | | | +--Pilibacter termitis (1) | | | | | +--Enterococcus ratti (1) | | | | | +--Melissococcus plutonius ATCC 35311 (1) | | | | | +--Enterococcus aquimarinus (1) | | | | | +--Enterococcus faecium DO (1) | | | | | +--Enterococcus casseliflavus EC20 (1) | | | | | +--Enterococcus italicus DSM 15952 (1) | | | | | +--Enterococcus faecalis V583 (1) | | | | | +--Enterococcus hermanniensis (1) | | | | | +--Enterococcus thailandicus (1) | | | | | +--Enterococcus sp. CCM4360 (1) | | | | | +--Tetragenococcus halophilus NBRC 12172 (1) | | | | | +--Vagococcus penaei (1) | | | | | +--Enterococcus devriesei (1) | | | | | +--Enterococcus hirae ATCC 9790 (1) | | | | | +--Vagococcus teuberi (1) | | | +--Leuconostoc lactis (1) | | | +--Lactobacillaceae (35) | | | | | +--Lactobacillus plantarum WCFS1 (1) | | | | | +--Sharpea azabuensis (1) | | | | | +--Lactobacillus reuteri DSM 20016 (1) | | | | | +--Lactobacillus oris PB013-T2-3 (1) | | | | | +--Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 (1) | | | | | +--Lactobacillus animalis (1) | | | | | +--Pediococcus argentinicus (1) | | | | | +--Lactobacillus salivarius UCC118 (1) | | | | | +--Lactobacillus fermentum CECT 5716 (1) | | | | | +--Lactobacillus sp. ASF360 (1) | | | | | +--Lactobacillus acetotolerans (1) | | | | | +--Lactobacillus helveticus DPC 4571 (1) | | | | | +--Pediococcus pentosaceus ATCC 25745 (1) | | | | | +--Lactobacillus iners DSM 13335 (1) | | | | | +--Lactobacillus fructivorans (1) | | | | | +--Lactobacillus acidophilus NCFM (1) | | | | | +--Lactobacillus siliginis (1) | | | | | +--Lactobacillus coleohominis 101-4-CHN (1) | | | | | +--Lactobacillus johnsonii NCC 533 (1) | | | | | +--Paralactobacillus selangorensis (1) | | | | | +--Pediococcus stilesii (1) | | | | | +--Lactobacillus kunkeei (1) | | | | | +--Lactobacillus ruminis ATCC 27782 (1) | | | | | +--Pediococcus acidilactici DSM 20284 (1) | | | | | +--Lactobacillus pobuzihii (1) | | | | | +--Lactobacillus sakei subsp. sakei 23K (1) | | | | | +--Lactobacillus crispatus ST1 (1) | | | | | +--Lactobacillus brevis subsp. gravesensis ATCC 27305 (1) | | | | | +--Lactobacillus acidipiscis (1) | | | | | +--Pediococcus cellicola (1) | | | | | +--Lactobacillus jensenii JV-V16 (1) | | | | | +--Lactobacillus ingluviei (1) | | | | | +--Lactobacillus amylolyticus DSM 11664 (1) | | | | | +--Lactobacillus secaliphilus (1) | | | | | +--Lactobacillus apis (1) | | | +--Fructobacillus fructosus KCTC 3544 (1) | +--Bacillales (99) | | | +--Staphylococcus carnosus subsp. carnosus TM300 (1) | | | +--Staphylococcus pseudintermedius (1) | | | +--Staphylococcus saprophyticus (1) | | | +--Staphylococcus cohnii subsp. cohnii (1) | | | +--Staphylococcus simiae CCM 7213 (1) | | | +--Staphylococcus capitis (1) | | | +--Planococcaceae (3) | | | | | +--Planomicrobium glaciei (1) | | | | | +--'Jeotgalibacillus soli' Cunha et al. 2011 (1) | | | | | +--Jeotgalibacillus campisalis (1) | | | +--Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (1) | | | +--Staphylococcus succinus (1) | | | +--Staphylococcus epidermidis RP62A (1) | | | +--Listeriaceae (2) | | | | | +--Listeria grayi DSM 20601 (1) | | | | | +--Listeria monocytogenes EGD-e (1) | | | +--Macrococcus caseolyticus JCSC5402 (1) | | | +--BacillalesFamilyXI.IncertaeSedis (1) | | | | | +--Gemella sp. WAL 1945J (1) | | | +--Paenibacillaceae (2) | | | | | +--Paenibacillus naphthalenovorans (1) | | | | | +--Aneurinibacillusgroup (1) | | | | | +--Aneurinibacillus migulanus (1) | | | +--Bacillaceae (75) | | | | | +--Bacillus sp. NIOC03 (1) | | | | | +--Oceanobacillus iheyensis HTE831 (1) | | | | | +--Bacillus pseudalcaliphilus (1) | | | | | +--Virgibacillus pantothenticus (1) | | | | | +--Bacillus niacini (1) | | | | | +--Bacillus sporothermodurans (1) | | | | | +--Bacillus coagulans 36D1 (1) | | | | | +--Bacillus galactosidilyticus (1) | | | | | +--Bacillus atrophaeus 1942 (1) | | | | | +--Bacillus pseudofirmus OF4 (1) | | | | | +--Bacillus thermoamylovorans (1) | | | | | +--Virgibacillus sp. CC-YMP-6 (1) | | | | | +--Bacillus methanolicus MGA3 (1) | | | | | +--Bacillus beveridgei (1) | | | | | +--Bacillus litoralis (1) | | | | | +--Bacillus indicus (1) | | | | | +--Virgibacillus chiguensis (1) | | | | | +--Bacillus koreensis (1) | | | | | +--Aeribacillus pallidus (1) | | | | | +--Gracilibacillus sp. K170 (1) | | | | | +--Bacillus subterraneus (1) | | | | | +--Bacillus megaterium QM B1551 (1) | | | | | +--Caldalkalibacillus thermarum TA2.A1 (1) | | | | | +--Bacillus sp. BL4-6 (1) | | | | | +--Bacillus ginsengihumi (1) | | | | | +--Bacillus amyloliquefaciens FZB42 (1) | | | | | +--Bacillus okhensis (1) | | | | | +--Bacillus macyae (1) | | | | | +--Bacillus badius (1) | | | | | +--Bacillus marisflavi (1) | | | | | +--Virgibacillus sp. SK37 (1) | | | | | +--Bacillus halodurans C-125 (1) | | | | | +--Geobacillus debilis (1) | | | | | +--Bacillus selenitireducens MLS10 (1) | | | | | +--Halobacillus mangrovi (1) | | | | | +--Bacillus sp. 2_A_57_CT2 (1) | | | | | +--Bacillus pumilus SAFR-032 (1) | | | | | +--Virgibacillus necropolis (1) | | | | | +--Geobacillus kaustophilus HTA426 (1) | | | | | +--Bacillus shackletonii (1) | | | | | +--Bacillus krulwichiae (1) | | | | | +--Sediminibacillus halophilus (1) | | | | | +--Bacillus arseniciselenatis (1) | | | | | +--Geobacillus sp. WCH70 (1) | | | | | +--Bacillus licheniformis ATCC 14580 (1) | | | | | +--Bacillus sp. 1NLA3E (1) | | | | | +--Bacillus vietnamensis (1) | | | | | +--Halobacillus karajensis (1) | | | | | +--Bacillus smithii (1) | | | | | +--Oceanobacillus oncorhynchi (1) | | | | | +--Bacillus arsenicus (1) | | | | | +--Bacillus subtilis subsp. subtilis str. 168 (1) | | | | | +--Bacillus clausii KSM-K16 (1) | | | | | +--Anaerobacillus alkalilacustre (1) | | | | | +--Bacillus endophyticus (1) | | | | | +--Salimicrobium sp. ISL-25 (1) | | | | | +--Geobacillus sp. Y4.1MC1 (1) | | | | | +--Bacillus cellulosilyticus DSM 2522 (1) | | | | | +--Bacillus circulans (1) | | | | | +--Halobacillus halophilus DSM 2266 (1) | | | | | +--Geobacillus thermodenitrificans NG80-2 (1) | | | | | +--Ornithinibacillus sp. G8B(2010) (1) | | | | | +--Bacillus aminovorans (1) | | | | | +--Oceanobacillus picturae (1) | | | | | +--Bacillus sp. NIOC16 (1) | | | | | +--Bacillus (6) | | | | | | | +--Bacillus cereus Rock4-18 (1) | | | | | | | +--Bacillus cytotoxicus NVH 391-98 (1) | | | | | | | +--Bacillus cereus ATCC 14579 (1) | | | | | | | +--Bacillus cereus Rock3-44 (1) | | | | | | | +--Bacillus gaemokensis (1) | | | | | | | +--Bacillus anthracis str. 'Ames Ancestor' (1) | | | | | +--Anoxybacillus flavithermus (1) | | | | | +--Anoxybacillus amylolyticus (1) | | | | | +--Anoxybacillus flavithermus WK1 (1) | | | | | +--Terribacillus aidingensis (1) | | | +--Staphylococcus hyicus (1) | | | +--Staphylococcus aureus subsp. aureus NCTC 8325 (1) | | | +--Staphylococcus haemolyticus JCSC1435 (1) | | | +--Staphylococcus microti (1) | | | +--Thermoactinomycetaceae (2) | | | +--Thermoactinomyces vulgaris (1) | | | +--Seinonella peptonophila (1) | +--Erysipelotrichi (2) | +--Erysipelotrichales (2) | +--Erysipelotrichaceae (1) | | | +--Turicibacter sanguinis PC909 (1) | +--Clostridium spiroforme DSM 1552 (1)