# Species tree for RF00080 # Generated from Rfam version 15.00 | +--bacterium M-07 (1) | +--Eukaryota (25) | | | +--Metazoa (13) | | | | | +--Nematoda (3) | | | | | | | +--Chromadorea (3) | | | | | | | +--Spirurida (2) | | | | | | | | | +--Filarioidea (2) | | | | | | | | | +--Onchocercidae (2) | | | | | | | | | +--Brugia timori (2) | | | | | | | +--Rhabditida (1) | | | | | | | +--Panagrolaimoidea (1) | | | | | | | +--Panagrolaimidae (1) | | | | | | | +--Panagrolaimus superbus (1) | | | | | +--Chordata (5) | | | | | | | +--Craniata (5) | | | | | | | +--Vertebrata (5) | | | | | | | +--Euteleostomi (5) | | | | | | | +--Actinopterygii (1) | | | | | | | | | +--Neopterygii (1) | | | | | | | | | +--Teleostei (1) | | | | | | | | | +--Euteleostei (1) | | | | | | | | | +--Protacanthopterygii (1) | | | | | | | | | +--Salmoniformes (1) | | | | | | | | | +--Salmonidae (1) | | | | | | | | | +--Salmoninae (1) | | | | | | | | | +--Hucho hucho (huchen) (1) | | | | | | | +--Archosauria (4) | | | | | | | +--Dinosauria (4) | | | | | | | +--Saurischia (4) | | | | | | | +--Theropoda (4) | | | | | | | +--Coelurosauria (4) | | | | | | | +--Aves (4) | | | | | | | +--Neognathae (4) | | | | | | | +--Passeriformes (4) | | | | | | | +--Corvoidea (2) | | | | | | | | | +--Irenidae (2) | | | | | | | | | +--Chloropsis hardwickii (2) | | | | | | | +--Timaliidae (2) | | | | | | | +--Pteruthius melanotis (2) | | | | | +--Arthropoda (4) | | | | | | | +--Hexapoda (2) | | | | | | | | | +--Insecta (2) | | | | | | | | | +--Pterygota (2) | | | | | | | | | +--Neoptera (2) | | | | | | | | | +--Endopterygota (2) | | | | | | | | | +--Coleoptera (1) | | | | | | | | | | | +--Polyphaga (1) | | | | | | | | | | | +--Cucujiformia (1) | | | | | | | | | | | +--Curculionidae (1) | | | | | | | | | | | +--Dryophthorinae (1) | | | | | | | | | | | +--Rhynchophorus ferrugineus (red palm weevil) (1) | | | | | | | | | +--Diptera (1) | | | | | | | | | +--Brachycera (1) | | | | | | | | | +--Muscomorpha (1) | | | | | | | | | +--Ephydroidea (1) | | | | | | | | | +--Drosophilidae (1) | | | | | | | | | +--Drosophila (1) | | | | | | | | | +--Drosophila kikkawai (1) | | | | | | | +--Crustacea (1) | | | | | | | | | +--Ostracoda (1) | | | | | | | | | +--Podocopa (1) | | | | | | | | | +--Podocopida (1) | | | | | | | | | +--Darwinulocopina (1) | | | | | | | | | +--Darwinuloidea (1) | | | | | | | | | +--Darwinulidae (1) | | | | | | | | | +--Darwinula stevensoni (1) | | | | | | | +--Chelicerata (1) | | | | | | | +--Arachnida (1) | | | | | | | +--Acari (1) | | | | | | | +--Acariformes (1) | | | | | | | +--Sarcoptiformes (1) | | | | | | | +--Oribatida (1) | | | | | | | +--Brachypylina (1) | | | | | | | +--Oppioidea (1) | | | | | | | +--Oppiidae (1) | | | | | | | +--Oppiella nova (1) | | | | | +--Annelida (1) | | | | | +--Polychaeta (1) | | | | | +--Scolecida (1) | | | | | +--Capitellida (1) | | | | | +--Capitellidae (1) | | | | | +--Capitella teleta (1) | | | +--Fungi (1) | | | | | +--Fungiincertaesedis (1) | | | | | +--Basalfungallineages (1) | | | | | +--Mucoromycotina (1) | | | | | +--Mucorales (1) | | | | | +--Mucoraceae (1) | | | | | +--Rhizopus delemar (1) | | | +--Viridiplantae (8) | | | | | +--Streptophyta (8) | | | | | +--Embryophyta (7) | | | | | | | +--Tracheophyta (7) | | | | | | | +--Spermatophyta (7) | | | | | | | +--Magnoliophyta (7) | | | | | | | +--Liliopsida (1) | | | | | | | | | +--Poales (1) | | | | | | | | | +--Poaceae (1) | | | | | | | | | +--BEPclade (1) | | | | | | | | | +--Ehrhartoideae (1) | | | | | | | | | +--Oryzeae (1) | | | | | | | | | +--Oryza sativa Indica Group (1) | | | | | | | +--eudicotyledons (6) | | | | | | | +--coreeudicotyledons (4) | | | | | | | | | +--Caryophyllales (1) | | | | | | | | | | | +--Amaranthaceae (1) | | | | | | | | | | | +--Beta vulgaris subsp. vulgaris (1) | | | | | | | | | +--rosids (2) | | | | | | | | | | | +--fabids (1) | | | | | | | | | | | | | +--Fabales (1) | | | | | | | | | | | | | +--Fabaceae (1) | | | | | | | | | | | | | +--Papilionoideae (1) | | | | | | | | | | | | | +--Trifolieae (1) | | | | | | | | | | | | | +--Medicago truncatula (barrel medic) (1) | | | | | | | | | | | +--malvids (1) | | | | | | | | | | | +--Malvales (1) | | | | | | | | | | | +--Malvaceae (1) | | | | | | | | | | | +--Grewioideae (1) | | | | | | | | | | | +--Corchorus olitorius (1) | | | | | | | | | +--asterids (1) | | | | | | | | | +--lamiids (1) | | | | | | | | | +--Lamiales (1) | | | | | | | | | +--Gesneriaceae (1) | | | | | | | | | +--Cyrtandroideae (1) | | | | | | | | | +--Didymocarpeae (1) | | | | | | | | | +--Boea hygrometrica (1) | | | | | | | +--Ranunculales (2) | | | | | | | +--Papaveraceae (2) | | | | | | | +--Papaver nudicaule (2) | | | | | +--Streptophytina (1) | | | | | +--Zygnemophyceae (1) | | | | | +--Zygnematophycidae (1) | | | | | +--Desmidiales (1) | | | | | +--Closteriaceae (1) | | | | | +--Closterium (1) | | | | | +--Closteriumperacerosum-strigosum-littoralecomplex (1) | | | | | +--Closterium sp. NIES-67 (1) | | | +--Opisthokonta (3) | | | +--Metazoa (1) | | | | | +--Eumetazoa (1) | | | | | +--Bilateria (1) | | | | | +--Protostomia (1) | | | | | +--Ecdysozoa (1) | | | | | +--Nematoda (1) | | | | | +--Chromadorea (1) | | | | | +--Rhabditida (1) | | | | | +--Rhabditina (1) | | | | | +--Rhabditomorpha (1) | | | | | +--Rhabditoidea (1) | | | | | +--Rhabditidae (1) | | | | | +--Rhabditidaeincertaesedis (1) | | | | | +--Diploscapter pachys (1) | | | +--Fungi (2) | | | +--Dikarya (1) | | | | | +--Ascomycota (1) | | | | | +--saccharomyceta (1) | | | | | +--Pezizomycotina (1) | | | | | +--leotiomyceta (1) | | | | | +--sordariomyceta (1) | | | | | +--Sordariomycetes (1) | | | | | +--Hypocreomycetidae (1) | | | | | +--Hypocreales (1) | | | | | +--Cordycipitaceae (1) | | | | | +--Beauveria (1) | | | | | +--Beauveria bassiana D1-5 (1) | | | +--Fungiincertaesedis (1) | | | +--Mucoromycota (1) | | | +--Mucoromycotina (1) | | | +--Mucoromycetes (1) | | | +--Mucorales (1) | | | +--Mucorineae (1) | | | +--Mucoraceae (1) | | | +--Apophysomyces (1) | | | +--Apophysomyces sp. BC1034 (1) | +--Bacteria (1112) | | | +--Bdellovibrionota (1) | | | | | +--Bdellovibrionia (1) | | | | | +--Bdellovibrionales (1) | | | | | +--Pseudobdellovibrionaceae (1) | | | | | +--Bdellovibrio (1) | | | | | +--Bdellovibrio sp. SKB1291214 (1) | | | +--Thermodesulfobacteriota (1) | | | | | +--Desulfovibrionia (1) | | | | | +--Desulfovibrionales (1) | | | | | +--Desulfovibrionaceae (1) | | | | | +--Nitratidesulfovibrio (1) | | | | | +--Nitratidesulfovibrio sp. HK-II (1) | | | +--Proteobacteria (578) | | | | | +--Alphaproteobacteria (108) | | | | | | | +--Rhizobiales (9) | | | | | | | | | +--Hyphomicrobiaceae (3) | | | | | | | | | | | +--Maritalea myrionectae (1) | | | | | | | | | | | +--Blastochloris viridis (1) | | | | | | | | | | | +--Hyphomicrobium denitrificans ATCC 51888 (1) | | | | | | | | | +--Rhodobiaceae (2) | | | | | | | | | | | +--Roseospirillum parvum (1) | | | | | | | | | | | +--Tepidicaulis marinus (1) | | | | | | | | | +--Xanthobacteraceae (1) | | | | | | | | | | | +--Xanthobacter autotrophicus Py2 (1) | | | | | | | | | +--Phyllobacteriaceae (2) | | | | | | | | | | | +--Parvibaculum lavamentivorans DS-1 (1) | | | | | | | | | | | +--Mesorhizobium sp. UASWS1009 (1) | | | | | | | | | +--Bradyrhizobiaceae (1) | | | | | | | | | +--Rhodoblastus acidophilus (1) | | | | | | | +--Caulobacterales (16) | | | | | | | | | +--Caulobacteraceae (16) | | | | | | | | | +--Brevundimonas sp. AAP58 (1) | | | | | | | | | +--Brevundimonas sp. Root1279 (1) | | | | | | | | | +--Caulobacter crescentus NA1000 (1) | | | | | | | | | +--Brevundimonas sp. SH203 (1) | | | | | | | | | +--Caulobacter crescentus CB15 (1) | | | | | | | | | +--Asticcacaulis sp. AC466 (1) | | | | | | | | | +--Brevundimonas halotolerans (1) | | | | | | | | | +--Caulobacter sp. FWC38 (1) | | | | | | | | | +--Asticcacaulis excentricus CB 48 (1) | | | | | | | | | +--Phenylobacterium zucineum HLK1 (1) | | | | | | | | | +--Brevundimonas naejangsanensis (1) | | | | | | | | | +--Asticcacaulis (1) | | | | | | | | | | | +--Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 (1) | | | | | | | | | +--Brevundimonas (1) | | | | | | | | | | | +--Brevundimonas abyssalis TAR-001 (1) | | | | | | | | | +--Phenylobacterium sp. Root1277 (1) | | | | | | | | | +--Brevundimonas sp. Root1423 (2) | | | | | | | +--Rhodospirillales (22) | | | | | | | | | +--Acetobacteraceae (3) | | | | | | | | | | | +--Stella humosa (1) | | | | | | | | | | | +--Rhodovastum atsumiense (1) | | | | | | | | | | | +--Acetobacter pomorum DM001 (1) | | | | | | | | | +--Rhodospirillaceae bacterium LM22 (1) | | | | | | | | | +--Rhodospirillaceae (18) | | | | | | | | | +--Azospirillum sp. B510 (1) | | | | | | | | | +--Magnetospirillum marisnigri (1) | | | | | | | | | +--Magnetospirillum magneticum AMB-1 (1) | | | | | | | | | +--Telmatospirillum siberiense (1) | | | | | | | | | +--Azospirillum doebereinerae (1) | | | | | | | | | +--Caenispirillum bisanense (1) | | | | | | | | | +--Rhodospirillum rubrum ATCC 11170 (1) | | | | | | | | | +--Phaeospirillum fulvum (1) | | | | | | | | | +--Pararhodospirillum (1) | | | | | | | | | | | +--Pararhodospirillum photometricum DSM 122 (1) | | | | | | | | | +--Skermanella aerolata (1) | | | | | | | | | +--Caenispirillum (1) | | | | | | | | | | | +--Caenispirillum salinarum AK4 (1) | | | | | | | | | +--Azospirillum sp. TSH58 (1) | | | | | | | | | +--Azospirillum amazonense Y2 (1) | | | | | | | | | +--Insolitospirillum peregrinum (1) | | | | | | | | | +--Roseospira marina (1) | | | | | | | | | +--Elstera litoralis (1) | | | | | | | | | +--Magnetospirillum (1) | | | | | | | | | | | +--Magnetospirillumgryphiswaldense (1) | | | | | | | | | | | +--Magnetospirillum gryphiswaldense MSR-1 v2 (1) | | | | | | | | | +--Oceanibaculum (1) | | | | | | | | | +--Oceanibaculum indicum P24 (1) | | | | | | | +--Sphingomonadales (57) | | | | | | | | | +--Erythrobacteraceae (9) | | | | | | | | | | | +--Erythrobacter sp. SG61-1L (1) | | | | | | | | | | | +--Porphyrobacter mercurialis (2) | | | | | | | | | | | +--Altererythrobacter atlanticus (1) | | | | | | | | | | | +--Altererythrobacter indicus (1) | | | | | | | | | | | +--Erythrobacter sp. UST081027-248 (1) | | | | | | | | | | | +--Altererythrobacter sp. Root672 (1) | | | | | | | | | | | +--Croceicoccus naphthovorans (2) | | | | | | | | | +--Sphingomonadaceae (48) | | | | | | | | | +--Blastomonas sp. AAP25 (1) | | | | | | | | | +--Novosphingobium sp. AP12 (1) | | | | | | | | | +--Novosphingobium sp. LL02 (1) | | | | | | | | | +--Sphingomonas sp. KC8 (2) | | | | | | | | | +--Novosphingobium sp. Leaf2 (1) | | | | | | | | | +--Novosphingobium sp. ST904 (1) | | | | | | | | | +--Sphingomonas wittichii RW1 (1) | | | | | | | | | +--Sphingomonas sp. Root710 (1) | | | | | | | | | +--Sphingobium sp. 469 (1) | | | | | | | | | +--Sphingobium japonicum UT26S (1) | | | | | | | | | +--Novosphingobium (1) | | | | | | | | | | | +--Novosphingobium tardaugens NBRC 16725 (1) | | | | | | | | | +--Novosphingobium sp. LE124 (1) | | | | | | | | | +--Sphingobium sp. TCM1 (1) | | | | | | | | | +--Novosphingobium sp. HU1-AH51 (1) | | | | | | | | | +--Sphingobium xenophagum (1) | | | | | | | | | +--Sphingomonas sp. IC081 (1) | | | | | | | | | +--Sphingomonas sp. Root720 (1) | | | | | | | | | +--Novosphingobium malaysiense (1) | | | | | | | | | +--Sphingomonas sp. SRS2 (1) | | | | | | | | | +--Sphingomonas melonis (1) | | | | | | | | | +--Sphingomonas sp. CJ70 (1) | | | | | | | | | +--Sphingomonas sp. VC-230 (1) | | | | | | | | | +--Sphingopyxis sp. BZ30 (1) | | | | | | | | | +--Sphingobium sp. BA-3 (1) | | | | | | | | | +--Sphingobium sp. SYK-6 (1) | | | | | | | | | +--Sphingomonas sp. SKA58 (1) | | | | | | | | | +--Sphingopyxis (1) | | | | | | | | | | | +--Sphingopyxis sp. enrichment culture clone 03SU3-P (1) | | | | | | | | | +--Sphingobium amiense (1) | | | | | | | | | +--Sphingomonas sp. Root241 (1) | | | | | | | | | +--Sphingopyxis alaskensis RB2256 (1) | | | | | | | | | +--Sphingomonas sp. WG (1) | | | | | | | | | +--Sphingobium sp. Chen 16-4 (1) | | | | | | | | | +--Sphingosinicella soli (1) | | | | | | | | | +--Novosphingobium sp. AAP83 (1) | | | | | | | | | +--Sphingopyxis sp. MC1 (1) | | | | | | | | | +--Sphingomonas koreensis (1) | | | | | | | | | +--Sphingomonas sp. MCT13 (1) | | | | | | | | | +--Sphingobium sp. EP60837 (1) | | | | | | | | | +--Sphingobium sp. TKS (2) | | | | | | | | | +--Sphingobium sp. C100 (1) | | | | | | | | | +--Novosphingobium sp. Rr 2-17 (1) | | | | | | | | | +--Sphingobium (4) | | | | | | | | | | | +--Sphingobium herbicidovorans NBRC 16415 (1) | | | | | | | | | | | +--Sphingobium czechense LL01 (1) | | | | | | | | | | | +--Sphingobium japonicum BiD32 (1) | | | | | | | | | | | +--Sphingobium ummariense RL-3 (1) | | | | | | | | | +--Pacificimonas flava (1) | | | | | | | +--Rhodobacterales (4) | | | | | | | +--Hyphomonadaceae (1) | | | | | | | | | +--Hyphomonas sp. L-53-1-40 (1) | | | | | | | +--Rhodobacteraceae (3) | | | | | | | +--Labrenzia sp. YC6927 (1) | | | | | | | +--Aquimixticola soesokkakensis (1) | | | | | | | +--Ketogulonigenium vulgarum WSH-001 (1) | | | | | +--Gammaproteobacteria (232) | | | | | | | +--Solimonas sp. NAA16 (1) | | | | | | | +--Enterobacterales (23) | | | | | | | | | +--Yersiniaceae (3) | | | | | | | | | | | +--Serratia sp. DD3 (1) | | | | | | | | | | | +--Ewingella (1) | | | | | | | | | | | | | +--Ewingella americana ATCC 33852 (1) | | | | | | | | | | | +--Chania (1) | | | | | | | | | | | +--Chania multitudinisentens RB-25 (1) | | | | | | | | | +--Pectobacteriaceae (2) | | | | | | | | | | | +--Sodalis praecaptivus (1) | | | | | | | | | | | +--Sodalis sp. TME1 (1) | | | | | | | | | +--Enterobacteriaceae (7) | | | | | | | | | | | +--Escherichia (1) | | | | | | | | | | | | | +--Escherichia vulneris NBRC 102420 (1) | | | | | | | | | | | +--Klebsiella sp. RIT-PI-d (1) | | | | | | | | | | | +--unclassifiedEnterobacteriaceae (1) | | | | | | | | | | | | | +--Enterobacteriaceae bacterium strain FGI 57 (1) | | | | | | | | | | | +--Klebsiella michiganensis (1) | | | | | | | | | | | +--Atlantibacter (1) | | | | | | | | | | | | | +--Atlantibacter hermannii NBRC 105704 (1) | | | | | | | | | | | +--Mangrovibacter sp. MFB070 (1) | | | | | | | | | | | +--Buttiauxella (1) | | | | | | | | | | | +--Buttiauxella agrestis ATCC 33320 (1) | | | | | | | | | +--Morganellaceae (6) | | | | | | | | | | | +--Xenorhabdus (2) | | | | | | | | | | | | | +--Xenorhabdus szentirmaii DSM 16338 (1) | | | | | | | | | | | | | +--Xenorhabdus bovienii str. kraussei Quebec (1) | | | | | | | | | | | +--Moellerella (1) | | | | | | | | | | | | | +--Moellerella wisconsensis ATCC 35017 (1) | | | | | | | | | | | +--Morganella (1) | | | | | | | | | | | | | +--Morganellamorganii (1) | | | | | | | | | | | | | +--Morganella morganii subsp. morganii KT (1) | | | | | | | | | | | +--Providencia (2) | | | | | | | | | | | +--Providencia sneebia DSM 19967 (2) | | | | | | | | | +--unclassifiedEnterobacterales (1) | | | | | | | | | | | +--Plesiomonas (1) | | | | | | | | | | | +--Plesiomonas shigelloides 302-73 (1) | | | | | | | | | +--Erwiniaceae (2) | | | | | | | | | | | +--Erwinia iniecta (1) | | | | | | | | | | | +--Erwinia gerundensis (1) | | | | | | | | | +--Hafniaceae (2) | | | | | | | | | +--Hafnia (2) | | | | | | | | | +--Hafnia alvei FB1 (2) | | | | | | | +--Aeromonadales (5) | | | | | | | | | +--Aeromonadaceae (5) | | | | | | | | | +--Tolumonas auensis DSM 9187 (1) | | | | | | | | | +--Oceanimonas doudoroffii (1) | | | | | | | | | +--Oceanimonas sp. GK1 (1) | | | | | | | | | +--Oceanisphaera sp. V1-41 (1) | | | | | | | | | +--Aeromonas hydrophila subsp. hydrophila ATCC 7966 (1) | | | | | | | +--Gallaecimonas sp. 3-C-1 (1) | | | | | | | +--Alteromonadales (20) | | | | | | | | | +--Ferrimonadaceae (2) | | | | | | | | | | | +--Ferrimonas balearica DSM 9799 (1) | | | | | | | | | | | +--Ferrimonas marina (1) | | | | | | | | | +--Pseudoalteromonadaceae (1) | | | | | | | | | | | +--Pseudoalteromonas sp. S4498 (1) | | | | | | | | | +--Shewanellaceae (8) | | | | | | | | | | | +--Shewanella frigidimarina NCIMB 400 (1) | | | | | | | | | | | +--Shewanella sp. P1-14-1 (1) | | | | | | | | | | | +--Shewanella woodyi ATCC 51908 (1) | | | | | | | | | | | +--Shewanella denitrificans OS217 (1) | | | | | | | | | | | +--Shewanella mangrovi (1) | | | | | | | | | | | +--Shewanella fodinae (1) | | | | | | | | | | | +--Shewanella algae (1) | | | | | | | | | | | +--Shewanella amazonensis SB2B (1) | | | | | | | | | +--Idiomarinaceae (1) | | | | | | | | | | | +--Idiomarina planktonica (1) | | | | | | | | | +--Alteromonadaceae (8) | | | | | | | | | +--Marinobacter sp. AC-23 (1) | | | | | | | | | +--Marinobacter sp. BSs20148 (1) | | | | | | | | | +--Aestuariibacter aggregatus (1) | | | | | | | | | +--Agarivorans (1) | | | | | | | | | | | +--Agarivorans albus MKT 106 (1) | | | | | | | | | +--Marinobacter sp. ZS2-30 (1) | | | | | | | | | +--Alteromonas hispanica (1) | | | | | | | | | +--Marinobacter litoralis (1) | | | | | | | | | +--Alishewanella (1) | | | | | | | | | +--Alishewanella agri BL06 (1) | | | | | | | +--Legionellales (1) | | | | | | | | | +--Legionellaceae (1) | | | | | | | | | +--Legionella feeleii (1) | | | | | | | +--Alteromonadales bacterium MLST1 (1) | | | | | | | +--Celerinatantimonadaceae (1) | | | | | | | | | +--Celerinatantimonas diazotrophica (1) | | | | | | | +--Xanthomonadales (38) | | | | | | | | | +--Rhodanobacteraceae (8) | | | | | | | | | | | +--Rhodanobacter sp. OK091 (1) | | | | | | | | | | | +--Luteibacter sp. UNCMF366Tsu5.1 (1) | | | | | | | | | | | +--Rhodanobacter sp. C06 (1) | | | | | | | | | | | +--Oleiagrimonas soli (1) | | | | | | | | | | | +--Rhodanobacter sp. B05 (1) | | | | | | | | | | | +--Rhodanobacter (1) | | | | | | | | | | | | | +--Rhodanobacter fulvus Jip2 (1) | | | | | | | | | | | +--Frateuria (1) | | | | | | | | | | | | | +--Frateuria aurantia DSM 6220 (1) | | | | | | | | | | | +--Dokdonella (1) | | | | | | | | | | | +--Dokdonella koreensis DS-123 (1) | | | | | | | | | +--Sinobacteraceae (2) | | | | | | | | | | | +--Steroidobacter denitrificans (1) | | | | | | | | | | | +--Steroidobacter sp. ZUMI 37 (1) | | | | | | | | | +--Xanthomonadaceae (27) | | | | | | | | | | | +--Aquimonas voraii (1) | | | | | | | | | | | +--Dyella sp. ATSB10 (1) | | | | | | | | | | | +--Dokdonella sp. PYM5-11 (1) | | | | | | | | | | | +--Dyella soli (2) | | | | | | | | | | | +--Stenotrophomonas sp. BIIR7 (1) | | | | | | | | | | | +--Panacagrimonas perspica (1) | | | | | | | | | | | +--Frateuria terrea (1) | | | | | | | | | | | +--Stenotrophomonas (1) | | | | | | | | | | | | | +--Stenotrophomonas maltophilia K279a (1) | | | | | | | | | | | +--Xanthomonas campestris pv. campestris str. ATCC 33913 (1) | | | | | | | | | | | +--Rhodanobacter sp. MO64 (1) | | | | | | | | | | | +--Pseudofulvimonas gallinarii (1) | | | | | | | | | | | +--Dokdonella sp. LM 2-5 (1) | | | | | | | | | | | +--Arenimonas (1) | | | | | | | | | | | | | +--Arenimonas metalli CF5-1 (1) | | | | | | | | | | | +--Stenotrophomonas terrae (1) | | | | | | | | | | | +--Dokdonella sp. CC-YHH031 (1) | | | | | | | | | | | +--Lysobacter sp. A03 (1) | | | | | | | | | | | +--Pseudoxanthomonas taiwanensis (1) | | | | | | | | | | | +--Stenotrophomonas koreensis (1) | | | | | | | | | | | +--Thermomonas haemolytica (1) | | | | | | | | | | | +--Dokdonella fugitiva (1) | | | | | | | | | | | +--Xanthomonas oryzae pv. oryzae KACC10331 (1) | | | | | | | | | | | +--Stenotrophomonas daejeonensis (1) | | | | | | | | | | | +--Fulvimonas soli (1) | | | | | | | | | | | +--Luteibacter anthropi (1) | | | | | | | | | | | +--Rhodanobacter lindaniclasticus (1) | | | | | | | | | | | +--Lysobacter (1) | | | | | | | | | | | +--Lysobacter concretionis Ko07 = DSM 16239 (1) | | | | | | | | | +--Pseudomonas boreopolis (1) | | | | | | | +--Enterobacteriales (26) | | | | | | | | | +--primary endosymbiont of Sitophilus oryzae (1) | | | | | | | | | +--Enterobacteriaceae (25) | | | | | | | | | +--Serratia fonticola (2) | | | | | | | | | +--Gibbsiella quercinecans (1) | | | | | | | | | +--Xenorhabdus koppenhoeferi (1) | | | | | | | | | +--Dickeya dadantii 3937 (1) | | | | | | | | | +--Enterobacter gergoviae (1) | | | | | | | | | +--Citrobacter freundii (1) | | | | | | | | | +--Xenorhabdus japonica (1) | | | | | | | | | +--Arsenophonus nasoniae (son-killer infecting Nasonia vitripennis) (1) | | | | | | | | | +--Xenorhabdus cabanillasii (1) | | | | | | | | | +--Cedecea neteri (1) | | | | | | | | | +--Enterobacter (1) | | | | | | | | | | | +--Enterobacter cloacae SCF1 (1) | | | | | | | | | +--Serratia ficaria (1) | | | | | | | | | +--Serratia sp. ATCC 39006 (1) | | | | | | | | | +--Yersinia pestis CO92 (1) | | | | | | | | | +--Brenneria goodwinii (1) | | | | | | | | | +--Edwardsiella hoshinae (1) | | | | | | | | | +--Cronobacter sakazakii ATCC BAA-894 (1) | | | | | | | | | +--Xenorhabdus innexi (1) | | | | | | | | | +--Serratia rubidaea (1) | | | | | | | | | +--Providencia stuartii (1) | | | | | | | | | +--Serratia (1) | | | | | | | | | | | +--Serratia symbiotica str. Tucson (1) | | | | | | | | | +--Escherichia blattae DSM 4481 (1) | | | | | | | | | +--Yersinia ruckeri (1) | | | | | | | | | +--Serratia odorifera DSM 4582 (1) | | | | | | | +--Oceanospirillales (23) | | | | | | | | | +--Oleibacter marinus (1) | | | | | | | | | +--Marinomonas aquimarina (1) | | | | | | | | | +--Oceanospirillum linum (1) | | | | | | | | | +--Oceanospirillaceae (5) | | | | | | | | | | | +--Marinomonas spartinae (1) | | | | | | | | | | | +--Marinospirillum (1) | | | | | | | | | | | | | +--Marinospirillum alkaliphilum DSM 21637 (1) | | | | | | | | | | | +--Marinobacterium sp. AK27 (1) | | | | | | | | | | | +--Marinomonas (1) | | | | | | | | | | | | | +--Marinomonas ushuaiensis DSM 15871 (1) | | | | | | | | | | | +--Thalassolituus (1) | | | | | | | | | | | +--Thalassolituus oleivorans MIL-1 (1) | | | | | | | | | +--Marinomonas pollencensis (1) | | | | | | | | | +--Bermanella marisrubri (1) | | | | | | | | | +--Pseudospirillum japonicum (1) | | | | | | | | | +--Hahellaceae (4) | | | | | | | | | | | +--Endozoicomonas numazuensis (1) | | | | | | | | | | | +--Hahella chejuensis KCTC 2396 (1) | | | | | | | | | | | +--Zooshikella ganghwensis (1) | | | | | | | | | | | +--Endozoicomonas elysicola (1) | | | | | | | | | +--Saccharospirillaceae (1) | | | | | | | | | | | +--Gynuella (1) | | | | | | | | | | | +--Gynuella sunshinyii YC6258 (1) | | | | | | | | | +--Endozoicomonaceae (1) | | | | | | | | | | | +--Parendozoicomonas haliclonae (1) | | | | | | | | | +--Halomonadaceae (3) | | | | | | | | | | | +--Halomonas pacifica (1) | | | | | | | | | | | +--Chromohalobacter salexigens DSM 3043 (1) | | | | | | | | | | | +--Halomonas sp. N12 (1) | | | | | | | | | +--Marinomonas mediterranea MMB-1 (1) | | | | | | | | | +--Alcanivoracaceae (1) | | | | | | | | | | | +--Alcanivorax borkumensis SK2 (1) | | | | | | | | | +--unclassifiedOceanospirillales (1) | | | | | | | | | +--Oceanospirillales bacterium LUC14_002_19_P2 (1) | | | | | | | +--Pseudomonadales (64) | | | | | | | | | +--Pseudomonadaceae (47) | | | | | | | | | | | +--Pseudomonas sp. M30-35 (1) | | | | | | | | | | | +--Pseudomonas salomonii (1) | | | | | | | | | | | +--Pseudomonas aeruginosa PAO1 (2) | | | | | | | | | | | +--Pseudomonas sp. StFLB209 (1) | | | | | | | | | | | +--Serpens flexibilis (1) | | | | | | | | | | | +--Rugamonas rubra (1) | | | | | | | | | | | +--Pseudomonas jinjuensis (1) | | | | | | | | | | | +--Pseudomonas saudiphocaensis (1) | | | | | | | | | | | +--Pseudomonas fluorescens SBW25 (1) | | | | | | | | | | | +--Pseudomonas stutzeri A1501 (1) | | | | | | | | | | | +--Pseudomonas indica (1) | | | | | | | | | | | +--Pseudomonas sp. FeS53a (1) | | | | | | | | | | | +--Pseudomonas syringae pv. tomato str. DC3000 (2) | | | | | | | | | | | +--Pseudomonas sp. M47T1 (1) | | | | | | | | | | | +--Pseudomonas sp. 21C1 (1) | | | | | | | | | | | +--Pseudomonas (4) | | | | | | | | | | | | | +--Pseudomonasaeruginosagroup (1) | | | | | | | | | | | | | | | +--Pseudomonas resinovorans NBRC 106553 (1) | | | | | | | | | | | | | +--Pseudomonas taeanensis MS-3 (1) | | | | | | | | | | | | | +--Pseudomonas knackmussii B13 (2) | | | | | | | | | | | +--Pseudomonas graminis (2) | | | | | | | | | | | +--Pseudomonas oryzihabitans (1) | | | | | | | | | | | +--Pseudomonas asplenii (1) | | | | | | | | | | | +--Pseudomonas fulva 12-X (2) | | | | | | | | | | | +--Oblitimonas alkaliphila (1) | | | | | | | | | | | +--Pseudomonas pachastrellae (1) | | | | | | | | | | | +--Pseudomonas corrugata (1) | | | | | | | | | | | +--Pseudomonas fluorescens HK44 (1) | | | | | | | | | | | +--Pseudomonas xinjiangensis (1) | | | | | | | | | | | +--Pseudomonas panipatensis (2) | | | | | | | | | | | +--Pseudomonas putida KT2440 (1) | | | | | | | | | | | +--Pseudomonas agarici (1) | | | | | | | | | | | +--Pseudomonas sp. TTU2014-080ASC (2) | | | | | | | | | | | +--Pseudomonas cremoricolorata (1) | | | | | | | | | | | +--Pseudomonas stutzeri (1) | | | | | | | | | | | +--Pseudomonas rhizosphaerae (1) | | | | | | | | | | | +--Pseudomonas sp. HPB0071 (2) | | | | | | | | | | | +--Pseudomonas sp. BZ93 (1) | | | | | | | | | | | +--Pseudomonas guineae (1) | | | | | | | | | | | +--Pseudomonas sp. BAY1663 (1) | | | | | | | | | | | +--Azomonas macrocytogenes (1) | | | | | | | | | +--Moraxellaceae (17) | | | | | | | | | +--Enhydrobacter aerosaccus (1) | | | | | | | | | +--Acinetobacter sp. ADP1 (1) | | | | | | | | | +--Acinetobacter sp. ANC 4558 (1) | | | | | | | | | +--Acinetobacter sp. TGL-Y2 (1) | | | | | | | | | +--Acinetobacter sp. CIP 102637 (1) | | | | | | | | | +--Acinetobacter larvae (1) | | | | | | | | | +--Acinetobacter populi (1) | | | | | | | | | +--Acinetobacter qingfengensis (1) | | | | | | | | | +--Acinetobacter sp. G30 (1) | | | | | | | | | +--Acinetobacter (8) | | | | | | | | | +--Acinetobacter gerneri DSM 14967 = CIP 107464 (1) | | | | | | | | | +--Acinetobacter calcoaceticus PHEA-2 (1) | | | | | | | | | +--Acinetobacter nectaris CIP 110549 (2) | | | | | | | | | +--Acinetobacter baumannii ATCC 19606 (1) | | | | | | | | | +--Acinetobacter guillouiae NIPH 991 (2) | | | | | | | | | +--Acinetobacter brisouii CIP 110357 (1) | | | | | | | +--Nevskiales (1) | | | | | | | | | +--Sinobacteraceae (1) | | | | | | | | | +--Hydrocarboniphaga (1) | | | | | | | | | +--Hydrocarboniphaga effusa AP103 (1) | | | | | | | +--Vibrionales (17) | | | | | | | | | +--Vibrionaceae (17) | | | | | | | | | +--Photobacterium jeanii (1) | | | | | | | | | +--Vibrio furnissii (1) | | | | | | | | | +--Photobacterium lipolyticum (1) | | | | | | | | | +--Photobacterium profundum SS9 (1) | | | | | | | | | +--Photobacterium sp. Gung47 (1) | | | | | | | | | +--Vibrio nigripulchritudo (1) | | | | | | | | | +--Vibrio cholerae O1 biovar El Tor str. N16961 (1) | | | | | | | | | +--Photobacterium ganghwense (1) | | | | | | | | | +--Photobacterium proteolyticum (1) | | | | | | | | | +--Vibrio fischeri ES114 (1) | | | | | | | | | +--Vibrio sp. F10 (1) | | | | | | | | | +--Photobacterium halotolerans (1) | | | | | | | | | +--Vibrio ishigakensis (1) | | | | | | | | | +--Photobacterium sp. CECT 7614 (1) | | | | | | | | | +--Vibrio (1) | | | | | | | | | | | +--Vibrio ezurae NBRC 102218 (1) | | | | | | | | | +--Enterovibrio sp. sw014 (1) | | | | | | | | | +--Photobacterium damselae subsp. damselae CIP 102761 (1) | | | | | | | +--Thiotrichales (1) | | | | | | | | | +--Thiotrichaceae (1) | | | | | | | | | +--Thiothrix caldifontis (1) | | | | | | | +--Chromatiales (9) | | | | | | | +--Ectothiorhodospiraceae (4) | | | | | | | | | +--Oceanococcus atlanticus (1) | | | | | | | | | +--Thioalkalivibrio denitrificans (1) | | | | | | | | | +--Alkalilimnicola ehrlichii (2) | | | | | | | +--Chromatiaceae (5) | | | | | | | +--Marichromatium purpuratum 984 (1) | | | | | | | +--Rheinheimera sp. F8 (2) | | | | | | | +--Allochromatium vinosum DSM 180 (1) | | | | | | | +--Thiocapsa marina 5811 (1) | | | | | +--beta proteobacterium KL-9 (1) | | | | | +--Betaproteobacteria (234) | | | | | | | +--unclassifiedBetaproteobacteria (2) | | | | | | | | | +--beta proteobacterium AAP65 (1) | | | | | | | | | +--Betaproteobacteria bacterium UKL13-2 (1) | | | | | | | +--Methylophilales (1) | | | | | | | | | +--Methylophilaceae (1) | | | | | | | | | +--Methylovorus sp. MM1 (1) | | | | | | | +--Burkholderiales (195) | | | | | | | | | +--Rubrivivax sp. (1) | | | | | | | | | +--Roseateles depolymerans (1) | | | | | | | | | +--Leptothrix cholodnii SP-6 (1) | | | | | | | | | +--Leptothrix mobilis (1) | | | | | | | | | +--Piscinibacter aquaticus (1) | | | | | | | | | +--Comamonadaceae (51) | | | | | | | | | | | +--Comamonas terrigena (2) | | | | | | | | | | | +--Acidovorax delafieldii 2AN (1) | | | | | | | | | | | +--Acidovorax sp. Leaf160 (1) | | | | | | | | | | | +--Delftia acidovorans SPH-1 (1) | | | | | | | | | | | +--Acidovorax sp. RAC01 (1) | | | | | | | | | | | +--Pseudacidovorax intermedius (1) | | | | | | | | | | | +--Variovorax sp. JS1663 (1) | | | | | | | | | | | +--Acidovorax avenae subsp. avenae ATCC 19860 (1) | | | | | | | | | | | +--Variovorax paradoxus (1) | | | | | | | | | | | +--Acidovorax caeni (1) | | | | | | | | | | | +--Polaromonas sp. CG9_12 (1) | | | | | | | | | | | +--Pseudorhodoferax sp. Leaf267 (1) | | | | | | | | | | | +--Acidovorax sp. CF316 (1) | | | | | | | | | | | +--Hydrogenophaga crassostreae (1) | | | | | | | | | | | +--Variovorax sp. PBL-E5 (1) | | | | | | | | | | | +--Giesbergeria anulus (1) | | | | | | | | | | | +--Variovorax sp. Root473 (1) | | | | | | | | | | | +--Polaromonas vacuolata (1) | | | | | | | | | | | +--Diaphorobacter sp. J5-51 (1) | | | | | | | | | | | +--Rhodoferax saidenbachensis (1) | | | | | | | | | | | +--Acidovorax sp. NA3 (1) | | | | | | | | | | | +--Lampropedia cohaerens (1) | | | | | | | | | | | +--Hylemonella gracilis ATCC 19624 (1) | | | | | | | | | | | +--Ramlibacter tataouinensis (1) | | | | | | | | | | | +--Pelomonas puraquae (3) | | | | | | | | | | | +--Comamonas sp. SP35 (1) | | | | | | | | | | | +--Polaromonas naphthalenivorans CJ2 (1) | | | | | | | | | | | +--Acidovorax sp. 12322-1 (1) | | | | | | | | | | | +--Acidovorax temperans (1) | | | | | | | | | | | +--Pseudorhodoferax sp. Leaf274 (2) | | | | | | | | | | | +--Acidovorax valerianellae (2) | | | | | | | | | | | +--Pelomonas saccharophila (1) | | | | | | | | | | | +--Ramlibacter sp. Leaf400 (1) | | | | | | | | | | | +--Malikia granosa (1) | | | | | | | | | | | +--Hydrogenophaga sp. H7 (1) | | | | | | | | | | | +--Kinneretia asaccharophila (1) | | | | | | | | | | | +--Acidovorax anthurii (1) | | | | | | | | | | | +--Rhodoferax fermentans (1) | | | | | | | | | | | +--Variovorax sp. PBS-H4 (1) | | | | | | | | | | | +--Rhodoferax koreense (1) | | | | | | | | | | | +--Polaromonas sp. JS666 (1) | | | | | | | | | | | +--Hydrogenophaga sp. A37 (1) | | | | | | | | | | | +--Variovorax sp. PAMC 28711 (2) | | | | | | | | | | | +--Ramlibacter sp. BXN5-27 (1) | | | | | | | | | | | +--Rhodoferax (1) | | | | | | | | | | | +--Rhodoferax antarcticus ANT.BR (1) | | | | | | | | | +--Alcaligenaceae (27) | | | | | | | | | | | +--Pusillimonas sp. MJ07 (1) | | | | | | | | | | | +--Pusillimonas terrae (1) | | | | | | | | | | | +--Pusillimonas noertemannii (1) | | | | | | | | | | | +--Bordetella genomosp. 9 (1) | | | | | | | | | | | +--Bordetella pertussis Tohama I (1) | | | | | | | | | | | +--Candidimonas nitroreducens (1) | | | | | | | | | | | +--Pusillimonas sp. PB3-7B (1) | | | | | | | | | | | +--Bordetella hinzii (2) | | | | | | | | | | | +--Alcaligenes sp. EGD-AK7 (1) | | | | | | | | | | | +--Alcaligenes sp. GR24-5 (1) | | | | | | | | | | | +--Bordetella sp. AU9919 (2) | | | | | | | | | | | +--Bordetella sp. N (2) | | | | | | | | | | | +--Pigmentiphaga litoralis (1) | | | | | | | | | | | +--Kerstersia gyiorum (1) | | | | | | | | | | | +--Bordetella sp. H567 (1) | | | | | | | | | | | +--Castellaniella (1) | | | | | | | | | | | | | +--Castellaniella defragrans 65Phen (1) | | | | | | | | | | | +--Pelistega indica (1) | | | | | | | | | | | +--Pusillimonas sp. B201 (1) | | | | | | | | | | | +--Bordetella trematum (1) | | | | | | | | | | | +--Orrella dioscoreae (1) | | | | | | | | | | | +--Bordetella avium 197N (1) | | | | | | | | | | | +--Paenalcaligenes hominis (1) | | | | | | | | | | | +--Pelistega europaea (1) | | | | | | | | | | | +--Advenella (1) | | | | | | | | | | | +--Advenella mimigardefordensis DPN7 (1) | | | | | | | | | +--Sphaerotilus natans subsp. sulfidovorans (1) | | | | | | | | | +--Oxalobacteraceae bacterium IMCC9480 (1) | | | | | | | | | +--Alcaligenaceae bacterium BZ59 (1) | | | | | | | | | +--Paucibacter toxinivorans (1) | | | | | | | | | +--Roseateles aquatilis (2) | | | | | | | | | +--Oxalobacteraceae (24) | | | | | | | | | | | +--Massilia sp. Leaf139 (1) | | | | | | | | | | | +--Duganella sp. Leaf126 (1) | | | | | | | | | | | +--Massilia sp. D5 (1) | | | | | | | | | | | +--Oxalicibacterium solurbis (1) | | | | | | | | | | | +--Massilia sp. KIM (1) | | | | | | | | | | | +--Janthinobacterium sp. KBS0711 (1) | | | | | | | | | | | +--Herbaspirillum seropedicae SmR1 (1) | | | | | | | | | | | +--Janthinobacterium (1) | | | | | | | | | | | | | +--Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 (1) | | | | | | | | | | | +--Herminiimonas arsenicoxydans (1) | | | | | | | | | | | +--Herbaspirillum sp. TSA66 (1) | | | | | | | | | | | +--Collimonas fungivorans Ter331 (1) | | | | | | | | | | | +--Oxalobacter formigenes OXCC13 (1) | | | | | | | | | | | +--Massilia (1) | | | | | | | | | | | | | +--Massilia timonae CCUG 45783 (1) | | | | | | | | | | | +--Herbaspirillum sp. YR522 (1) | | | | | | | | | | | +--Noviherbaspirillum sp. Root189 (2) | | | | | | | | | | | +--Herminiimonas fonticola (1) | | | | | | | | | | | +--Duganella sp. Root198D2 (1) | | | | | | | | | | | +--Massilia sp. NR 4-1 (1) | | | | | | | | | | | +--Oxalicibacterium flavum (1) | | | | | | | | | | | +--Massilia sp. 333-1-0411 (1) | | | | | | | | | | | +--Massilia sp. WF1 (1) | | | | | | | | | | | +--Undibacterium oligocarboniphilum (1) | | | | | | | | | | | +--Massilia sp. Root351 (1) | | | | | | | | | +--unclassifiedBurkholderiales (8) | | | | | | | | | | | +--BurkholderialesGeneraincertaesedis (8) | | | | | | | | | | | +--Ideonella sakaiensis (1) | | | | | | | | | | | +--Mitsuaria sp. 7 (1) | | | | | | | | | | | +--Aquabacterium sp. NJ1 (1) | | | | | | | | | | | +--Rhizobacter sp. Root1221 (1) | | | | | | | | | | | +--Rhizobacter sp. Root404 (1) | | | | | | | | | | | +--Rubrivivax (1) | | | | | | | | | | | | | +--Rubrivivax gelatinosus IL144 (1) | | | | | | | | | | | +--Rhizobacter sp. Root29 (1) | | | | | | | | | | | +--Paucibacter sp. KCTC 42545 (1) | | | | | | | | | +--Sphaerotilus hippei (1) | | | | | | | | | +--Aquabacterium commune (1) | | | | | | | | | +--Oxalobacteraceae bacterium Cr9-30 (1) | | | | | | | | | +--Burkholderiaceae (68) | | | | | | | | | | | +--Burkholderia xenovorans LB400 (2) | | | | | | | | | | | +--Ralstonia sp. PBA (1) | | | | | | | | | | | +--Burkholderia sp. TNe-841 (1) | | | | | | | | | | | +--Burkholderia sediminicola (3) | | | | | | | | | | | +--Paucimonas lemoignei (1) | | | | | | | | | | | +--Paraburkholderia ribeironis (2) | | | | | | | | | | | +--Candidatus Burkholderia kirkii UZHbot1 (1) | | | | | | | | | | | +--Burkholderia graminis C4D1M (2) | | | | | | | | | | | +--Burkholderia glathei (2) | | | | | | | | | | | +--Burkholderia sp. IMER-B1-49 (2) | | | | | | | | | | | +--Cupriavidus sp. ASC-64 (2) | | | | | | | | | | | +--Burkholderia sp. LMG 22936 (2) | | | | | | | | | | | +--Burkholderia sp. PO-04-17-38 (1) | | | | | | | | | | | +--Burkholderia phymatum STM815 (1) | | | | | | | | | | | +--Burkholderia phenazinium (2) | | | | | | | | | | | +--Burkholderia sp. SRS-W-2-2016 (2) | | | | | | | | | | | +--Burkholderia glumae BGR1 (1) | | | | | | | | | | | +--Burkholderia sp. NKMU-JPY345 (1) | | | | | | | | | | | +--Cupriavidus metallidurans CH34 (1) | | | | | | | | | | | +--Burkholderia caryophylli (1) | | | | | | | | | | | +--Burkholderia sp. ATSB16 (1) | | | | | | | | | | | +--Limnobacter sp. MED105 (1) | | | | | | | | | | | +--Cupriavidus basilensis (1) | | | | | | | | | | | +--Ralstonia solanacearum GMI1000 (1) | | | | | | | | | | | +--Paraburkholderia ginsengiterrae (1) | | | | | | | | | | | +--Ralstonia eutropha H16 (1) | | | | | | | | | | | +--Chitinimonas (1) | | | | | | | | | | | | | +--Chitinimonas taiwanensis DSM 18899 (1) | | | | | | | | | | | +--Cupriavidus sp. HPC(L) (1) | | | | | | | | | | | +--Pandoraea pnomenusa (1) | | | | | | | | | | | +--Burkholderia sp. OLGA172 (2) | | | | | | | | | | | +--Burkholderia andropogonis (2) | | | | | | | | | | | +--Burkholderia sacchari (2) | | | | | | | | | | | +--Burkholderia sp. J1 (1) | | | | | | | | | | | +--Burkholderia (8) | | | | | | | | | | | | | +--Burkholderia pseudomallei K96243 (1) | | | | | | | | | | | | | +--Burkholderia singularis (1) | | | | | | | | | | | | | +--Burkholderia glumae PG1 (1) | | | | | | | | | | | | | +--Burkholderia dolosa AUO158 (2) | | | | | | | | | | | | | +--Burkholderia seminalis (2) | | | | | | | | | | | | | +--Burkholderia multivorans ATCC 17616 (1) | | | | | | | | | | | +--Burkholderia sp. JPY461 (1) | | | | | | | | | | | +--Burkholderia soli (1) | | | | | | | | | | | +--Burkholderia sp. Leaf177 (2) | | | | | | | | | | | +--Burkholderia megapolitana (2) | | | | | | | | | | | +--Cupriavidus sp. USMAA2-4 (1) | | | | | | | | | | | +--Burkholderia sp. IMER-B1-33 (1) | | | | | | | | | | | +--Burkholderia tropica (1) | | | | | | | | | | | +--Ralstonia solanacearum IPO1609 (1) | | | | | | | | | | | +--Burkholderia sp. lig30 (1) | | | | | | | | | | | +--Candidatus Burkholderia verschuerenii (2) | | | | | | | | | +--Methylibium petroleiphilum PM1 (1) | | | | | | | | | +--Ideonella dechloratans (1) | | | | | | | | | +--Methylibium sp. NS21 (1) | | | | | | | +--Rhodocyclales (15) | | | | | | | | | +--Rhodocyclaceae (15) | | | | | | | | | +--Thauera sp. 27 (1) | | | | | | | | | +--Azoarcus tolulyticus (1) | | | | | | | | | +--Azoarcus sp. BH72 (1) | | | | | | | | | +--Azoarcus indigens (2) | | | | | | | | | +--Thauera (3) | | | | | | | | | | | +--Thauera linaloolentis 47Lol = DSM 12138 (1) | | | | | | | | | | | +--Thauera terpenica 58Eu (2) | | | | | | | | | +--Propionivibrio dicarboxylicus (1) | | | | | | | | | +--Rugosibacter aromaticivorans (1) | | | | | | | | | +--Aromatoleum aromaticum EbN1 (1) | | | | | | | | | +--Azoarcus sp. KH32C (1) | | | | | | | | | +--Azoarcus communis (1) | | | | | | | | | +--Denitratisoma oestradiolicum (1) | | | | | | | | | +--Azoarcus sp. NSC3 (1) | | | | | | | +--Neisseriales (17) | | | | | | | | | +--Chromobacteriaceae (4) | | | | | | | | | | | +--Vogesella sp. EB (1) | | | | | | | | | | | +--Chromobacteriumgroup (2) | | | | | | | | | | | | | +--Chromobacterium sp. LK11 (2) | | | | | | | | | | | +--Vogesella sp. LIG4 (1) | | | | | | | | | +--Neisseriaceae (13) | | | | | | | | | +--Formivibrio citricus (1) | | | | | | | | | +--Pseudogulbenkiania sp. NH8B (2) | | | | | | | | | +--Laribacter hongkongensis HLHK9 (1) | | | | | | | | | +--Neisseria (1) | | | | | | | | | | | +--Neisseria sp. oral taxon 020 str. F0370 (1) | | | | | | | | | +--Crenobacter luteus (1) | | | | | | | | | +--Vitreoscilla filiformis (1) | | | | | | | | | +--Microvirgula aerodenitrificans (1) | | | | | | | | | +--Neisseria arctica (1) | | | | | | | | | +--Silvimonas terrae (1) | | | | | | | | | +--Chromobacterium violaceum ATCC 12472 (1) | | | | | | | | | +--Jeongeupia sp. HS-3 (1) | | | | | | | | | +--Neisseriaceae bacterium IGB-41 (1) | | | | | | | +--[Polyangium] brachysporum (1) | | | | | | | +--Nitrosomonadales (3) | | | | | | | +--Nitrosomonadaceae (3) | | | | | | | +--Nitrosospira multiformis ATCC 25196 (1) | | | | | | | +--Nitrosovibrio tenuis (1) | | | | | | | +--Nitrosomonas europaea ATCC 19718 (1) | | | | | +--Deltaproteobacteria (1) | | | | | | | +--Syntrophobacterales (1) | | | | | | | +--Syntrophaceae (1) | | | | | | | +--Desulfobacca acetoxidans DSM 11109 (1) | | | | | +--gamma proteobacterium HdN1 (1) | | | | | +--gamma proteobacterium TUD-JY37 (1) | | | +--PVCgroup (1) | | | | | +--Planctomycetota (1) | | | | | +--Planctomycetia (1) | | | | | +--Isosphaerales (1) | | | | | +--Isosphaeraceae (1) | | | | | +--Tautonia sociabilis (1) | | | +--Terrabacteriagroup (59) | | | | | +--Firmicutes (16) | | | | | | | +--Clostridia (3) | | | | | | | | | +--Clostridiales (3) | | | | | | | | | +--unclassifiedClostridiales (1) | | | | | | | | | | | +--unclassifiedClostridiales(miscellaneous) (1) | | | | | | | | | | | +--Clostridiales bacterium oral taxon 876 str. F0540 (1) | | | | | | | | | +--Clostridiaceae (2) | | | | | | | | | +--Clostridium sp. BL8 (1) | | | | | | | | | +--Thermobrachium (1) | | | | | | | | | +--Thermobrachium celere DSM 8682 (1) | | | | | | | +--Bacilli (13) | | | | | | | +--Bacillales (13) | | | | | | | +--Bacillaceae (11) | | | | | | | | | +--Bacillus sp. SGD-V-76 (2) | | | | | | | | | +--Quasibacillus thermotolerans (1) | | | | | | | | | +--Bacillus (2) | | | | | | | | | | | +--Bacillus lehensis G1 (1) | | | | | | | | | | | +--Bacillus azotoformans LMG 9581 (1) | | | | | | | | | +--Bacillus weihaiensis (1) | | | | | | | | | +--Bacillus sp. FJAT-27916 (1) | | | | | | | | | +--Bacillus sp. FJAT-27986 (1) | | | | | | | | | +--Bacillus sp. FJAT-18017 (1) | | | | | | | | | +--Bacillus sp. FJAT-27231 (1) | | | | | | | | | +--Psychrobacillus sp. FJAT-21963 (1) | | | | | | | +--Listeriaceae (2) | | | | | | | +--Listeria booriae (1) | | | | | | | +--Brochothrix (1) | | | | | | | +--Brochothrix campestris FSL F6-1037 (1) | | | | | +--Bacillota (43) | | | | | +--Clostridia (3) | | | | | | | +--Peptostreptococcales (1) | | | | | | | | | +--Natronincolaceae (1) | | | | | | | | | +--Alkaliphilus (1) | | | | | | | | | +--Alkaliphilus sp. B6464 (1) | | | | | | | +--Eubacteriales (2) | | | | | | | +--Clostridiaceae (2) | | | | | | | +--Caloramator (1) | | | | | | | | | +--Caloramator sp. E03 (1) | | | | | | | +--Clostridiaceae bacterium 14S0207 (1) | | | | | +--Bacilli (40) | | | | | +--Bacillales (40) | | | | | +--Paenibacillaceae (2) | | | | | | | +--Paenibacillus (1) | | | | | | | | | +--Paenibacillus sp. PvR098 (1) | | | | | | | +--Paenibacillus sabuli (1) | | | | | +--Bacillaceae (32) | | | | | | | +--Peribacillus saganii (1) | | | | | | | +--Neobacillus piezotolerans (1) | | | | | | | +--Oceanobacillus zhaokaii (1) | | | | | | | +--Oceanobacillus piezotolerans (1) | | | | | | | +--Psychrobacillus glaciei (1) | | | | | | | +--Peribacillus cavernae (1) | | | | | | | +--Falsibacillus albus (1) | | | | | | | +--Metabacillus sediminilitoris (1) | | | | | | | +--Metabacillus lacus (1) | | | | | | | +--Oceanobacillus bengalensis (1) | | | | | | | +--Lederbergia citrea (1) | | | | | | | +--Mangrovibacillus cuniculi (1) | | | | | | | +--Virgibacillus indicus (1) | | | | | | | +--Bacillaceae bacterium SAS-127 (1) | | | | | | | +--Niallia taxi (1) | | | | | | | +--Domibacillus epiphyticus (1) | | | | | | | +--Bacillus (10) | | | | | | | | | +--Bacillus sp. FJAT-49711 (1) | | | | | | | | | +--Bacillus sp. FJAT-50079 (1) | | | | | | | | | +--Bacillus sp. 165 (1) | | | | | | | | | +--Bacillus sp. B1-b2 (1) | | | | | | | | | +--Bacillus sp. V5-8f (1) | | | | | | | | | +--Bacillus sp. PK3_68 (1) | | | | | | | | | +--Bacillus sp. AFS018417 (1) | | | | | | | | | +--Bacillus sp. V59.32b (1) | | | | | | | | | +--Bacillus sp. AFS040349 (1) | | | | | | | | | +--Bacillus sp. FJAT-49736 (1) | | | | | | | +--Shouchella lonarensis (1) | | | | | | | +--Calidifontibacillus/Schinkiagroup (1) | | | | | | | | | +--Calidifontibacillus erzurumensis (1) | | | | | | | +--Priestia taiwanensis (2) | | | | | | | +--Ectobacillus ponti (1) | | | | | | | +--Metabacillus arenae (1) | | | | | +--Listeriaceae (2) | | | | | | | +--Listeria kieliensis (1) | | | | | | | +--Listeria (1) | | | | | | | +--Listeria fleischmannii subsp. fleischmannii (1) | | | | | +--Thermoactinomycetaceae (4) | | | | | +--Paenactinomyces guangxiensis (1) | | | | | +--Desmospora (1) | | | | | | | +--Desmospora activa DSM 45169 (1) | | | | | +--Polycladospora coralii (1) | | | | | +--Thermoactinomyces mirandus (1) | | | +--Firmicutes (52) | | | | | +--Clostridia (7) | | | | | | | +--Thermoanaerobacterales (1) | | | | | | | | | +--Thermoanaerobacteraceae (1) | | | | | | | | | +--Moorellagroup (1) | | | | | | | | | +--Moorella thermoacetica (1) | | | | | | | +--Halanaerobiales (1) | | | | | | | | | +--Halobacteroidaceae (1) | | | | | | | | | +--Acetohalobium arabaticum DSM 5501 (1) | | | | | | | +--Clostridiales (5) | | | | | | | +--Peptococcaceae (1) | | | | | | | | | +--Desulfotomaculum ruminis DSM 2154 (1) | | | | | | | +--Clostridiaceae (4) | | | | | | | +--Caloramator australicus RC3 (1) | | | | | | | +--Clostridium chromoreductans (1) | | | | | | | +--Caloramator fervidus (1) | | | | | | | +--Thermohalobacter berrensis (1) | | | | | +--Lactobacillales (2) | | | | | | | +--Streptococcaceae (1) | | | | | | | | | +--Lactococcus garvieae Lg2 (1) | | | | | | | +--Carnobacteriaceae (1) | | | | | | | +--Agitococcus lubricus (1) | | | | | +--Bacillales (43) | | | | | +--Staphylococcus saccharolyticus (1) | | | | | +--Thermoactinomycetaceae bacterium NariEX (1) | | | | | +--Planococcaceae (1) | | | | | | | +--Jeotgalibacillus alimentarius (1) | | | | | +--Staphylococcus epidermidis RP62A (1) | | | | | +--Listeriaceae (3) | | | | | | | +--Listeria grayi DSM 20601 (1) | | | | | | | +--Brochothrix thermosphacta (1) | | | | | | | +--Listeria monocytogenes EGD-e (1) | | | | | +--Bacillaceae (32) | | | | | | | +--Bacillus megaterium QM B1551 (1) | | | | | | | +--Bacillus asahii (1) | | | | | | | +--Bacillus shackletonii (1) | | | | | | | +--Oceanobacillus profundus (1) | | | | | | | +--Bacillus sp. BL4-6 (1) | | | | | | | +--Bacillus oleronius (1) | | | | | | | +--Bacillus sporothermodurans (1) | | | | | | | +--Bacillus deserti (1) | | | | | | | +--Bacillus psychrosaccharolyticus (1) | | | | | | | +--Bacillus nealsonii (1) | | | | | | | +--Bacillus [pallidus] (1) | | | | | | | +--Bacillus ginsengihumi (1) | | | | | | | +--Bacillus fortis (1) | | | | | | | +--Bacillus licheniformis ATCC 14580 (1) | | | | | | | +--Bacillus circulans (1) | | | | | | | +--Bacillus safensis (1) | | | | | | | +--Bacillus marisflavi (1) | | | | | | | +--Ornithinibacillus sp. G8B(2010) (1) | | | | | | | +--Bacillus foraminis (1) | | | | | | | +--Bacillus pseudomycoides (1) | | | | | | | +--Geobacillus sp. E265 (1) | | | | | | | +--Bacillus vietnamensis (1) | | | | | | | +--Bacillus lentus (1) | | | | | | | +--Bacillus (2) | | | | | | | | | +--Bacillus cereus ATCC 14579 (1) | | | | | | | | | +--Bacillus anthracis str. 'Ames Ancestor' (1) | | | | | | | +--Bacillus aquimaris (1) | | | | | | | +--Bacillus sp. A24(2010) (1) | | | | | | | +--Bacillus litoralis (2) | | | | | | | +--Bacillus sp. Y1 (1) | | | | | | | +--Bacillus subtilis subsp. subtilis str. 168 (1) | | | | | | | +--Ornithinibacillus sp. J8B(2010) (1) | | | | | +--Paenibacillaceae (3) | | | | | | | +--Brevibacillus laterosporus LMG 15441 (1) | | | | | | | +--Aneurinibacillusgroup (1) | | | | | | | | | +--Ammoniphilus oxalaticus (1) | | | | | | | +--Paenibacillus sp. 598K (1) | | | | | +--Staphylococcus aureus subsp. aureus NCTC 8325 (1) | | | +--Pseudomonadota (420) | | | +--Alphaproteobacteria (102) | | | | | +--Alphaproteobacteria bacterium PA2 (1) | | | | | +--Maricaulales (2) | | | | | | | +--Maricaulaceae (2) | | | | | | | +--Marinicauda salina (1) | | | | | | | +--Alkalicaulis satelles (1) | | | | | +--Rhodospirillales (18) | | | | | | | +--Acetobacteraceae (3) | | | | | | | | | +--Acetobacter (1) | | | | | | | | | | | +--Acetobacter sp. DsW_54 (1) | | | | | | | | | +--Oleomonas cavernae (1) | | | | | | | | | +--Acidocella aromatica (1) | | | | | | | +--Kiloniellaceae (1) | | | | | | | | | +--Kiloniellaceae bacterium (1) | | | | | | | +--Zavarziniaceae (2) | | | | | | | | | +--Zavarzinia aquatilis (1) | | | | | | | | | +--Zavarzinia compransoris (1) | | | | | | | +--Azospirillaceae (3) | | | | | | | | | +--Azospirillum griseum (1) | | | | | | | | | +--Azospirillum thermophilum (1) | | | | | | | | | +--Nitrospirillum (1) | | | | | | | | | +--Nitrospirillum amazonense CBAmc (1) | | | | | | | +--Thalassobaculaceae (1) | | | | | | | | | +--Thalassobaculum fulvum (1) | | | | | | | +--Dongiaceae (2) | | | | | | | | | +--Aliidongia dinghuensis (1) | | | | | | | | | +--Hypericibacter adhaerens (1) | | | | | | | +--Rhodospirillaceae (6) | | | | | | | +--Marivibrio halodurans (1) | | | | | | | +--Hwanghaeella grinnelliae (1) | | | | | | | +--Pacificispira spongiicola (1) | | | | | | | +--Magnetospirillum (1) | | | | | | | | | +--Magnetospirillum aberrantis SpK (1) | | | | | | | +--Rhodospirillaceae bacterium LM-1 (1) | | | | | | | +--Elstera cyanobacteriorum (1) | | | | | +--alpha proteobacterium U9-1i (1) | | | | | +--Emcibacterales (1) | | | | | | | +--Govaniaceae (1) | | | | | | | +--Govania unica (1) | | | | | +--Sphingomonadales (54) | | | | | | | +--Erythrobacteraceae (9) | | | | | | | | | +--Altererythrobacter (2) | | | | | | | | | | | +--Altererythrobacter sp. TH136 (1) | | | | | | | | | | | +--Altererythrobacter sp. B11 (1) | | | | | | | | | +--Croceibacterium xixiisoli (1) | | | | | | | | | +--Qipengyuania algicida (1) | | | | | | | | | +--Croceicoccus pelagius (1) | | | | | | | | | +--Erythrobacter/Porphyrobactergroup (1) | | | | | | | | | | | +--Erythrobacter (1) | | | | | | | | | | | +--Erythrobacter sp. 3-20A1M (1) | | | | | | | | | +--Tsuneonella aeria (1) | | | | | | | | | +--Altericroceibacterium endophyticum (1) | | | | | | | | | +--Aurantiacibacter xanthus (1) | | | | | | | +--Sphingosinicellaceae (3) | | | | | | | | | +--Sphingosinicella humi (1) | | | | | | | | | +--Sphingosinicella ginsenosidimutans (1) | | | | | | | | | +--Glacieibacterium frigidum (1) | | | | | | | +--Sphingomonadaceae (42) | | | | | | | +--Sphingopyxis (2) | | | | | | | | | +--Sphingopyxis sp. MG (1) | | | | | | | | | +--Sphingopyxis sp. QXT-31 (1) | | | | | | | +--Sphingomonas montanisoli (1) | | | | | | | +--Sphingomonas oleivorans (1) | | | | | | | +--Novosphingobium flavum (1) | | | | | | | +--Sphingomonas guangdongensis (1) | | | | | | | +--Sphingopyxis lindanitolerans (1) | | | | | | | +--Novosphingobium guangzhouense (1) | | | | | | | +--Sphingopyxis italica (1) | | | | | | | +--Rhizorhabdus dicambivorans (1) | | | | | | | +--Sphingomonas chungangi (1) | | | | | | | +--Sphingomonas suaedae (1) | | | | | | | +--Novosphingobium chloroacetimidivorans (1) | | | | | | | +--Sphingomonas metalli (1) | | | | | | | +--Sphingobium phenoxybenzoativorans (1) | | | | | | | +--Novosphingobium (4) | | | | | | | | | +--Novosphingobium sp. (1) | | | | | | | | | +--Novosphingobium sp. CF614 (1) | | | | | | | | | +--Novosphingobium sp. 9U (1) | | | | | | | | | +--Novosphingobium sp. PC22D (1) | | | | | | | +--Sphingosinithalassobacter tenebrarum (1) | | | | | | | +--Sphingomonas tagetis (1) | | | | | | | +--Sphingomonas (7) | | | | | | | | | +--Sphingomonas sp. YR710 (1) | | | | | | | | | +--Sphingomonas parapaucimobilis NBRC 15100 (1) | | | | | | | | | +--Sphingomonas sp. IBVSS2 (1) | | | | | | | | | +--Sphingomonas sp. JC676 (1) | | | | | | | | | +--Sphingomonas sp. G-3-2-10 (1) | | | | | | | | | +--Sphingomonas sp. OV641 (1) | | | | | | | | | +--Sphingomonas sp. AP4-R1 (1) | | | | | | | +--Sphingomonas lacunae (1) | | | | | | | +--Sphingomonas paeninsulae (1) | | | | | | | +--Novosphingobium endophyticum (1) | | | | | | | +--Sphingorhabdus pulchriflava (1) | | | | | | | +--Sphingomonadaceae bacterium G21617-S1 (1) | | | | | | | +--Sphingobium algorifonticola (1) | | | | | | | +--Sphingomonas cavernae (1) | | | | | | | +--Sphingobium (6) | | | | | | | | | +--Sphingobium sp. SCG-1 (1) | | | | | | | | | +--Sphingobium sp. YR768 (1) | | | | | | | | | +--Sphingobium sp. CAP-1 (1) | | | | | | | | | +--Sphingobium sp. RAC03 (1) | | | | | | | | | +--Sphingobium sp. YG1 (1) | | | | | | | | | +--Sphingobium yanoikuyae ATCC 51230 (1) | | | | | | | +--Novosphingobium fluoreni (1) | | | | | +--Hyphomicrobiales (11) | | | | | | | +--Parvibaculaceae (2) | | | | | | | | | +--Kaustia mangrovi (1) | | | | | | | | | +--Parvibaculum sedimenti (1) | | | | | | | +--Kaistiaceae (1) | | | | | | | | | +--Kaistia hirudinis (1) | | | | | | | +--Pleomorphomonadaceae (2) | | | | | | | | | +--Methylobrevis albus (1) | | | | | | | | | +--Pleomorphomonas diazotrophica (1) | | | | | | | +--Rhizobiaceae (2) | | | | | | | | | +--Rhizobium/Agrobacteriumgroup (2) | | | | | | | | | +--Rhizobium metallidurans (2) | | | | | | | +--Hyphomicrobialesincertaesedis (1) | | | | | | | | | +--Vineibacter terrae (1) | | | | | | | +--Boseaceae (1) | | | | | | | | | +--Bosea spartocytisi (1) | | | | | | | +--Ancalomicrobiaceae (1) | | | | | | | | | +--Siculibacillus lacustris (1) | | | | | | | +--Reyranellaceae (1) | | | | | | | +--Reyranella soli (1) | | | | | +--Caulobacterales (14) | | | | | +--Caulobacteraceae (13) | | | | | | | +--Phenylobacterium soli (2) | | | | | | | +--Phenylobacterium deserti (1) | | | | | | | +--Caulobacter (2) | | | | | | | | | +--Caulobacter sp. 17J65-9 (1) | | | | | | | | | +--Caulobacter sp. Root655 (1) | | | | | | | +--Phenylobacterium glaciei (1) | | | | | | | +--Phenylobacterium parvum (1) | | | | | | | +--Caulobacteraceae bacterium (2) | | | | | | | +--Brevundimonas (1) | | | | | | | | | +--Brevundimonas sp. (1) | | | | | | | +--Phenylobacterium hankyongense (1) | | | | | | | +--Asticcacaulis endophyticus (1) | | | | | | | +--Brevundimonas goettingensis (1) | | | | | +--Caulobacteralesincertaesedis (1) | | | | | +--Candidatus Phycosocius bacilliformis (1) | | | +--Proteobacteria bacterium 228 (1) | | | +--Gammaproteobacteria (109) | | | | | +--Enterobacterales (10) | | | | | | | +--Yersiniaceae (1) | | | | | | | | | +--Chimaeribacter arupi (1) | | | | | | | +--Pectobacteriaceae (2) | | | | | | | | | +--Affinibrenneria salicis (1) | | | | | | | | | +--Acerihabitans arboris (1) | | | | | | | +--Enterobacteriaceae (3) | | | | | | | | | +--Kosakonia (1) | | | | | | | | | | | +--Kosakonia cowanii JCM 10956 = DSM 18146 (1) | | | | | | | | | +--Citrobacter (1) | | | | | | | | | | | +--Citrobacter sp. JGM124 (1) | | | | | | | | | +--Tenebrionibacter/Tenebrionicolagroup (1) | | | | | | | | | +--Tenebrionibacter intestinalis (1) | | | | | | | +--Morganellaceae (2) | | | | | | | | | +--Providencia (1) | | | | | | | | | | | +--Providencia heimbachae ATCC 35613 (1) | | | | | | | | | +--Proteus (1) | | | | | | | | | +--Proteus myxofaciens ATCC 19692 (1) | | | | | | | +--Budviciaceae (1) | | | | | | | | | +--Limnobaculum parvum (1) | | | | | | | +--Hafniaceae (1) | | | | | | | +--Enterobacillus tribolii (1) | | | | | +--Steroidobacterales (1) | | | | | | | +--Steroidobacteraceae (1) | | | | | | | +--Steroidobacter agaridevorans (1) | | | | | +--Aeromonadales (1) | | | | | | | +--Aeromonadaceae (1) | | | | | | | +--Oceanisphaera avium (1) | | | | | +--Moraxellales (6) | | | | | | | +--Moraxellaceae (6) | | | | | | | +--Psychrobacter (1) | | | | | | | | | +--Psychrobacter sp. KH172YL61 (1) | | | | | | | +--Acinetobacter defluvii (1) | | | | | | | +--Amnimonas aquatica (1) | | | | | | | +--Aquirhabdus parva (1) | | | | | | | +--Fluviicoccus keumensis (1) | | | | | | | +--Acinetobacter (1) | | | | | | | +--Acinetobacter indicus CIP 110367 (1) | | | | | +--Nevskiales (6) | | | | | | | +--Nevskiaceae (6) | | | | | | | +--Sinimarinibacterium (1) | | | | | | | | | +--Sinimarinibacterium sp. CAU 1509 (1) | | | | | | | +--Solimonas terrae (1) | | | | | | | +--Solimonas marina (1) | | | | | | | +--Stenotrophobium rhamnosiphilum (1) | | | | | | | +--Solimonas fluminis (1) | | | | | | | +--Stagnimonas aquatica (1) | | | | | +--Alteromonadales (10) | | | | | | | +--Moritellaceae (1) | | | | | | | | | +--Moritella (1) | | | | | | | | | +--Moritella sp. Urea-trap-13 (1) | | | | | | | +--Ferrimonadaceae (2) | | | | | | | | | +--Ferrimonas aestuarii (1) | | | | | | | | | +--Ferrimonas sediminicola (1) | | | | | | | +--Pseudoalteromonadaceae (1) | | | | | | | | | +--Pseudoalteromonas (1) | | | | | | | | | +--Pseudoalteromonas sp. NC201 (1) | | | | | | | +--Shewanellaceae (1) | | | | | | | | | +--Shewanella salipaludis (1) | | | | | | | +--Idiomarinaceae (1) | | | | | | | | | +--Aliidiomarina soli (1) | | | | | | | +--Alteromonadaceae (4) | | | | | | | +--Paraglaciecola (1) | | | | | | | | | +--Paraglaciecola mesophila KMM 241 (1) | | | | | | | +--Neptunicella marina (1) | | | | | | | +--Alteromonas/Salinimonasgroup (2) | | | | | | | +--Alteromonas (1) | | | | | | | | | +--Alteromonas sp. KUL42 (1) | | | | | | | +--Alteromonas pelagimontana (1) | | | | | +--Vibrionales (5) | | | | | | | +--Vibrionaceae (5) | | | | | | | +--Vibrio toranzoniae (1) | | | | | | | +--Vibrio paucivorans (1) | | | | | | | +--Veronia nyctiphanis (1) | | | | | | | +--Vibrio ziniensis (1) | | | | | | | +--Vibrio (1) | | | | | | | +--Vibrio tapetis subsp. tapetis (1) | | | | | +--Gammaproteobacteriaincertaesedis (1) | | | | | | | +--CandidatusCompetibacteraceae (1) | | | | | | | +--Plasticicumulans lactativorans (1) | | | | | +--Cellvibrionales (3) | | | | | | | +--Cellvibrionaceae (2) | | | | | | | | | +--Simiduia aestuariiviva (1) | | | | | | | | | +--Cellvibrio polysaccharolyticus (1) | | | | | | | +--Halieaceae (1) | | | | | | | +--Haliea (1) | | | | | | | +--Haliea sp. (1) | | | | | +--Xanthomonadales (22) | | | | | | | +--Rhodanobacteraceae (11) | | | | | | | | | +--Aerosticca soli (1) | | | | | | | | | +--Luteibacter (1) | | | | | | | | | | | +--Luteibacter sp. Sphag1AF (1) | | | | | | | | | +--Dyella (2) | | | | | | | | | | | +--Dyella sp. OK004 (1) | | | | | | | | | | | +--Dyella sp. AD56 (1) | | | | | | | | | +--Ahniella affigens (1) | | | | | | | | | +--Mizugakiibacter sediminis (1) | | | | | | | | | +--Rhodanobacter (2) | | | | | | | | | | | +--Rhodanobacter sp. ANJX3 (1) | | | | | | | | | | | +--Rhodanobacter sp. MP7CTX1 (1) | | | | | | | | | +--Dyella choica (1) | | | | | | | | | +--Dyella dinghuensis (1) | | | | | | | | | +--Dyella tabacisoli (1) | | | | | | | +--Xanthomonadaceae (11) | | | | | | | +--Coralloluteibacterium stylophorae (1) | | | | | | | +--Thermomonas carbonis (1) | | | | | | | +--Lysobacter lacus (1) | | | | | | | +--Pseudolysobacter antarcticus (1) | | | | | | | +--Rehaibacterium terrae (1) | | | | | | | +--Pseudoxanthomonas (1) | | | | | | | | | +--Pseudoxanthomonas sp. (1) | | | | | | | +--Pseudoxanthomonas composti (1) | | | | | | | +--Luteimonas chenhongjianii (1) | | | | | | | +--Lysobacter (2) | | | | | | | | | +--Lysobacter sp. N42 (1) | | | | | | | | | +--Lysobacter sp. TY2-98 (1) | | | | | | | +--Alkalisalibacterium limincola (1) | | | | | +--Gammaproteobacteria bacterium ESL0073 (2) | | | | | +--Thiotrichales (1) | | | | | | | +--Thiotrichaceae (1) | | | | | | | +--Candidatus Thiothrix singaporensis (1) | | | | | +--Chromatiales (4) | | | | | | | +--Ectothiorhodospiraceae (2) | | | | | | | | | +--Candidatus Macondimonas diazotrophica (1) | | | | | | | | | +--Thioalkalivibrio (1) | | | | | | | | | +--Thioalkalivibrio paradoxus ARh 1 (1) | | | | | | | +--Chromatiaceae (1) | | | | | | | | | +--Imhoffiella purpurea (1) | | | | | | | +--Wenzhouxiangellaceae (1) | | | | | | | +--Wenzhouxiangella (1) | | | | | | | +--Wenzhouxiangella sp. XN24 (1) | | | | | +--Oceanospirillales (8) | | | | | | | +--Natronospirillaceae (1) | | | | | | | | | +--Natronospirillum operosum (1) | | | | | | | +--Alcanivoracaceae (1) | | | | | | | | | +--Alloalcanivorax marinus (1) | | | | | | | +--Oceanospirillaceae (5) | | | | | | | | | +--Nitrincola tapanii (1) | | | | | | | | | +--Parathalassolituus penaei (1) | | | | | | | | | +--Marinospirillum celere (1) | | | | | | | | | +--Marinomonas piezotolerans (1) | | | | | | | | | +--Marinomonas transparens (1) | | | | | | | +--Pleioneaceae (1) | | | | | | | +--Aliikangiella marina (1) | | | | | +--Pseudomonadales (29) | | | | | +--Marinobacteraceae (1) | | | | | | | +--Marinobacter confluentis (1) | | | | | +--Pseudomonadaceae (28) | | | | | +--Pseudomonas kuykendallii (1) | | | | | +--Halopseudomonas phragmitis (1) | | | | | +--Pseudomonas matsuisoli (1) | | | | | +--Entomomonas asaccharolytica (1) | | | | | +--Halopseudomonas laoshanensis (1) | | | | | +--Thiopseudomonas denitrificans (1) | | | | | +--Halopseudomonas salegens (1) | | | | | +--Pseudomonas pharmacofabricae (1) | | | | | +--Halopseudomonas yangmingensis (1) | | | | | +--Pseudomonas (16) | | | | | | | +--Pseudomonas sp. URIL14HWK12:I9 (1) | | | | | | | +--Pseudomonas sp. HLS-6 (1) | | | | | | | +--Pseudomonas sp. OIL-1 (1) | | | | | | | +--Pseudomonas sp. ABC1 (1) | | | | | | | +--Pseudomonas sp. TAD18 (1) | | | | | | | +--Pseudomonas sp. MRSN 12121 (2) | | | | | | | +--Pseudomonas sp. SSM44 (1) | | | | | | | +--Pseudomonas sp. Boi14 (2) | | | | | | | +--Pseudomonas sp. GD03985 (1) | | | | | | | +--Pseudomonas sp. 1239 (1) | | | | | | | +--Pseudomonas sp. v388 (1) | | | | | | | +--Pseudomonas sp. GV071 (1) | | | | | | | +--Pseudomonas sp. 8AS (1) | | | | | | | +--Pseudomonas sp. SDI (1) | | | | | +--Pseudomonas mangrovi (1) | | | | | +--Pseudomonas carbonaria (1) | | | | | +--Pseudomonas cavernae (1) | | | +--Betaproteobacteria (206) | | | | | +--Betaproteobacteria bacterium SCN2 (1) | | | | | +--Burkholderiales (181) | | | | | | | +--Burkholderiales bacterium PBB1 (1) | | | | | | | +--Alcaligenaceae (22) | | | | | | | | | +--Pusillimonas (1) | | | | | | | | | | | +--Pusillimonas sp. ANT_WB101 (1) | | | | | | | | | +--Verticiella sediminum (2) | | | | | | | | | +--Paracandidimonas soli (1) | | | | | | | | | +--Corticimicrobacter populi (1) | | | | | | | | | +--Pigmentiphaga aceris (2) | | | | | | | | | +--Bordetella genomosp. 5 (1) | | | | | | | | | +--Pigmentiphaga humi (1) | | | | | | | | | +--Orrella marina (1) | | | | | | | | | +--Achromobacter kerstersii (2) | | | | | | | | | +--Pigmentiphaga (1) | | | | | | | | | | | +--Pigmentiphaga sp. NML030171 (1) | | | | | | | | | +--Bordetella genomosp. 7 (1) | | | | | | | | | +--Bordetella (1) | | | | | | | | | | | +--Bordetella sp. 02P26C-1 (1) | | | | | | | | | +--Candidimonas (2) | | | | | | | | | | | +--Candidimonas sp. SYP-B2681 (2) | | | | | | | | | +--Pollutimonas nitritireducens (1) | | | | | | | | | +--Pelistega ratti (1) | | | | | | | | | +--Derxia (1) | | | | | | | | | | | +--Derxia gummosa DSM 723 (1) | | | | | | | | | +--Alcaligenaceae bacterium 429 (1) | | | | | | | | | +--Achromobacter (1) | | | | | | | | | +--Achromobacter sp. AONIH1 (1) | | | | | | | +--Burkholderiales bacterium PBB4 (1) | | | | | | | +--Burkholderialesgeneraincertaesedis (5) | | | | | | | | | +--Aquabacterium (1) | | | | | | | | | | | +--Aquabacterium sp. (1) | | | | | | | | | +--Xylophilus rhododendri (1) | | | | | | | | | +--Aquabacterium soli (1) | | | | | | | | | +--Aquabacterium lacunae (1) | | | | | | | | | +--Rhizobacter (1) | | | | | | | | | +--Rhizobacter sp. AJA081-3 (1) | | | | | | | +--Burkholderiales bacterium PBB6 (1) | | | | | | | +--Sphaerotilaceae (18) | | | | | | | | | +--Schlegelella koreensis (2) | | | | | | | | | +--Inhella crocodyli (1) | | | | | | | | | +--Rubrivivax albus (1) | | | | | | | | | +--Ideonella livida (1) | | | | | | | | | +--Roseateles (5) | | | | | | | | | | | +--Mitsuaria sp. PDC51 (1) | | | | | | | | | | | +--Roseateles sp. DAIF2 (1) | | | | | | | | | | | +--Paucibacter sp. KBW04 (1) | | | | | | | | | | | +--Pelomonas sp. HMWF004 (1) | | | | | | | | | | | +--Mitsuaria sp. WAJ17 (1) | | | | | | | | | +--Inhella proteolytica (1) | | | | | | | | | +--Caldimonas caldifontis (1) | | | | | | | | | +--Ideonella aquatica (1) | | | | | | | | | +--Inhella gelatinilytica (1) | | | | | | | | | +--Rubrivivax pictus (1) | | | | | | | | | +--Rubrivivax (1) | | | | | | | | | | | +--Rubrivivax sp. A210 (1) | | | | | | | | | +--Azohydromonas caseinilytica (2) | | | | | | | +--Oxalobacteraceae (34) | | | | | | | | | +--Undibacterium luofuense (1) | | | | | | | | | +--Telluriagroup (8) | | | | | | | | | | | +--Pseudoduganella armeniaca (1) | | | | | | | | | | | +--Pseudoduganella ginsengisoli (1) | | | | | | | | | | | +--Massilia (1) | | | | | | | | | | | | | +--Massilia sp. Root335 (1) | | | | | | | | | | | +--Rugamonas rivuli (1) | | | | | | | | | | | +--Rugamonas brunnea (1) | | | | | | | | | | | +--Massilia forsythiae (1) | | | | | | | | | | | +--Duganella (2) | | | | | | | | | | | +--Duganella sp. CF517 (1) | | | | | | | | | | | +--Duganella sp. 1224 (1) | | | | | | | | | +--Noviherbaspirillum pedocola (1) | | | | | | | | | +--Noviherbaspirillum cavernae (1) | | | | | | | | | +--Noviherbaspirillum sedimenti (1) | | | | | | | | | +--Glaciimonas (1) | | | | | | | | | | | +--Glaciimonas sp. PCH181 (1) | | | | | | | | | +--Undibacterium piscinae (1) | | | | | | | | | +--Noviherbaspirillum denitrificans (1) | | | | | | | | | +--Noviherbaspirillum humi (1) | | | | | | | | | +--Janthinobacterium (1) | | | | | | | | | | | +--Janthinobacterium sp. 17J80-10 (1) | | | | | | | | | +--Oxalobacteraceae bacterium CAVE-383 (1) | | | | | | | | | +--Noviherbaspirillum galbum (1) | | | | | | | | | +--Solimicrobium silvestre (1) | | | | | | | | | +--Undibacterium rugosum (1) | | | | | | | | | +--Undibacterium nitidum (1) | | | | | | | | | +--Herbaspirillum (3) | | | | | | | | | | | +--Herbaspirillum sp. SJZ107 (1) | | | | | | | | | | | +--Herbaspirillum sp. Sphag64 (1) | | | | | | | | | | | +--Herbaspirillum sp. meg3 (1) | | | | | | | | | +--Noviherbaspirillum saxi (1) | | | | | | | | | +--Glaciimonas soli (1) | | | | | | | | | +--Herminiimonas (1) | | | | | | | | | | | +--Herminiimonas sp. (1) | | | | | | | | | +--Undibacterium terreum (1) | | | | | | | | | +--Undibacterium jejuense (1) | | | | | | | | | +--Undibacterium (1) | | | | | | | | | | | +--Undibacterium sp. KW1 (1) | | | | | | | | | +--Oxalobacteraceae bacterium OM1 (2) | | | | | | | | | +--Undibacterium fentianense (1) | | | | | | | +--Burkholderiales bacterium PBB3 (1) | | | | | | | +--Burkholderiaceae (46) | | | | | | | | | +--Trinickia terrae (1) | | | | | | | | | +--Trinickia dinghuensis (1) | | | | | | | | | +--Paraburkholderia lacunae (1) | | | | | | | | | +--Paraburkholderia panacisoli (2) | | | | | | | | | +--Paraburkholderia dinghuensis (1) | | | | | | | | | +--Pandoraea terrae (1) | | | | | | | | | +--Paraburkholderia caffeinitolerans (2) | | | | | | | | | +--Paraburkholderia eburnea (1) | | | | | | | | | +--Zeimonas arvi (1) | | | | | | | | | +--Paraburkholderia acidisoli (1) | | | | | | | | | +--Caballeronia novacaledonica (2) | | | | | | | | | +--Formosimonas limnophila (1) | | | | | | | | | +--Trinickia fusca (1) | | | | | | | | | +--Burkholderia (1) | | | | | | | | | | | +--Burkholderia sp. WAC0059 (1) | | | | | | | | | +--Paraburkholderia monticola (2) | | | | | | | | | +--Cupriavidus (2) | | | | | | | | | | | +--Cupriavidus sp. YR651 (1) | | | | | | | | | | | +--Cupriavidus gilardii J11 (1) | | | | | | | | | +--Paraburkholderia ultramafica (2) | | | | | | | | | +--Cupriavidus agavae (1) | | | | | | | | | +--Paraburkholderia (5) | | | | | | | | | | | +--Paraburkholderia sp. LEh10 (1) | | | | | | | | | | | +--Paraburkholderia sp. BL23I1N1 (1) | | | | | | | | | | | +--Paraburkholderia sp. BL10I2N1 (2) | | | | | | | | | | | +--Paraburkholderia sp. DHOC27 (1) | | | | | | | | | +--Caballeronia (2) | | | | | | | | | | | +--Caballeronia sp. SBC1 (2) | | | | | | | | | +--Paraburkholderia fynbosensis (2) | | | | | | | | | +--Paraburkholderia saeva (2) | | | | | | | | | +--Paraburkholderia steynii (2) | | | | | | | | | +--Cupriavidus yeoncheonensis (1) | | | | | | | | | +--Paraburkholderia tagetis (1) | | | | | | | | | +--Caballeronia concitans (2) | | | | | | | | | +--Pararobbsia silviterrae (2) | | | | | | | | | +--Paraburkholderia acidiphila (1) | | | | | | | | | +--Chitinasiproducens palmae (2) | | | | | | | +--Sutterellaceae (1) | | | | | | | | | +--Mesosutterella multiformis (1) | | | | | | | +--Comamonadaceae (51) | | | | | | | +--Comamonas flocculans (2) | | | | | | | +--Oryzisolibacter propanilivorax (1) | | | | | | | +--Variovorax (8) | | | | | | | | | +--Variovorax sp. PDC80 (2) | | | | | | | | | +--Variovorax sp. CF079 (1) | | | | | | | | | +--Variovorax sp. (1) | | | | | | | | | +--Variovorax sp. Sphag1AA (1) | | | | | | | | | +--Variovorax sp. OV329 (1) | | | | | | | | | +--Variovorax sp. PAMC28562 (1) | | | | | | | | | +--Variovorax sp. MHTC-1 (1) | | | | | | | +--Paenacidovorax monticola (1) | | | | | | | +--Hydrogenophaga crocea (1) | | | | | | | +--Variovorax terrae (1) | | | | | | | +--Ramlibacter (1) | | | | | | | | | +--Ramlibacter sp. (1) | | | | | | | +--Simplicispira hankyongi (1) | | | | | | | +--Ramlibacter humi (1) | | | | | | | +--Ramlibacter lithotrophicus (1) | | | | | | | +--Ramlibacter rhizophilus (1) | | | | | | | +--Acidovorax (2) | | | | | | | | | +--Acidovorax sp. (1) | | | | | | | | | +--Acidovorax sp. HDW3 (1) | | | | | | | +--Caenimonas aquaedulcis (1) | | | | | | | +--Ramlibacter agri (1) | | | | | | | +--Comamonas (3) | | | | | | | | | +--Comamonas sp. 26 (1) | | | | | | | | | +--Comamonas sp. JNW (2) | | | | | | | +--Ottowia oryzae (1) | | | | | | | +--Hydrogenophaga (3) | | | | | | | | | +--Hydrogenophaga taeniospiralis CCUG 15921 (1) | | | | | | | | | +--Hydrogenophaga sp. IBVHS2 (1) | | | | | | | | | +--Hydrogenophaga sp. BPS33 (1) | | | | | | | +--Ramlibacter pinisoli (1) | | | | | | | +--Polaromonas (4) | | | | | | | | | +--Polaromonas sp. (1) | | | | | | | | | +--Polaromonas sp. Pch-P (1) | | | | | | | | | +--Polaromonas sp. OV174 (1) | | | | | | | | | +--Polaromonas sp. A23 (1) | | | | | | | +--Ramlibacter monticola (1) | | | | | | | +--Simplicispira (1) | | | | | | | | | +--Simplicispira sp. 125 (1) | | | | | | | +--Curvibacter (1) | | | | | | | | | +--Curvibacter sp. AEP1-3 (1) | | | | | | | +--Rhodoferax sediminis (1) | | | | | | | +--Hydrogenophaga aromaticivorans (1) | | | | | | | +--Polaromonas eurypsychrophila (1) | | | | | | | +--Melaminivora alkalimesophila (1) | | | | | | | +--Hydrogenophaga borbori (1) | | | | | | | +--Ramlibacter cellulosilyticus (1) | | | | | | | +--Diaphorobacter aerolatus (1) | | | | | | | +--Comamonas antarctica (2) | | | | | | | +--Caenimonas (1) | | | | | | | | | +--Caenimonas koreensis DSM 17982 (1) | | | | | | | +--Rhodoferax (2) | | | | | | | | | +--Rhodoferax sp. OV413 (1) | | | | | | | | | +--Rhodoferax sp. TH121 (1) | | | | | | | +--Ramlibacter algicola (1) | | | | | +--Rhodocyclales (12) | | | | | | | +--Rhodocyclaceae (3) | | | | | | | | | +--Rhodocyclaceae bacterium (1) | | | | | | | | | +--Niveibacterium umoris (1) | | | | | | | | | +--Azospira inquinata (1) | | | | | | | +--Zoogloeaceae (9) | | | | | | | +--Pseudothauera nasutitermitis (1) | | | | | | | +--Uliginosibacterium (1) | | | | | | | | | +--Uliginosibacterium sp. TH139 (1) | | | | | | | +--Pseudothauera lacus (1) | | | | | | | +--Thauera (1) | | | | | | | | | +--Thauera sp. K11 (1) | | | | | | | +--Pseudothauera rhizosphaerae (1) | | | | | | | +--Zoogloea dura (1) | | | | | | | +--Parazoarcus (1) | | | | | | | | | +--Parazoarcus communis SWub3 = DSM 12120 (1) | | | | | | | +--Nitrogeniibacter mangrovi (1) | | | | | | | +--Zoogloea oleivorans (1) | | | | | +--Betaproteobacteria bacterium SCN1 (1) | | | | | +--Neisseriales (9) | | | | | | | +--Chromobacteriaceae (2) | | | | | | | | | +--Aquitalea (1) | | | | | | | | | | | +--Aquitalea sp. FJL05 (1) | | | | | | | | | +--Paludibacterium paludis (1) | | | | | | | +--Neisseriaceae (2) | | | | | | | | | +--Craterilacuibacter sinensis (1) | | | | | | | | | +--Neisseria (1) | | | | | | | | | +--Neisseria sp. 51.81 (1) | | | | | | | +--Chitinibacteraceae (5) | | | | | | | +--Chitinimonas (1) | | | | | | | | | +--Chitinimonas sp. BJB300 (1) | | | | | | | +--Iodobacter ciconiae (1) | | | | | | | +--Chitinimonas arctica (1) | | | | | | | +--Chitiniphilus eburneus (2) | | | | | +--Betaproteobacteria bacterium (1) | | | | | +--Nitrosomonadales (1) | | | | | +--Methylophilaceae (1) | | | | | +--Methylophilaceae bacterium (1) | | | +--Pseudomonadota bacterium (1) | | | +--Hydrogenophilia (1) | | | +--Hydrogenophilaliaincertaesedis (1) | | | +--Pelomicrobium methylotrophicum (1) | +--Viruses (1) | +--Duplodnaviria (1) | +--Heunggongvirae (1) | +--Uroviricota (1) | +--Caudoviricetes (1) | +--Acinetobacter phage MD-2021a (1)