# Species tree for RF03054 # Generated from Rfam version 15.00 | +--Eukaryota (4) | | | +--Metazoa (2) | | | | | +--Arthropoda (2) | | | | | +--Hexapoda (2) | | | | | +--Insecta (2) | | | | | +--Pterygota (2) | | | | | +--Neoptera (2) | | | | | +--Endopterygota (2) | | | | | +--Coleoptera (1) | | | | | | | +--Polyphaga (1) | | | | | | | +--Cucujiformia (1) | | | | | | | +--Curculionidae (1) | | | | | | | +--Scolytinae (1) | | | | | | | +--Dendroctonus ponderosae (mountain pine beetle) (1) | | | | | +--Diptera (1) | | | | | +--Brachycera (1) | | | | | +--Muscomorpha (1) | | | | | +--Ephydroidea (1) | | | | | +--Drosophilidae (1) | | | | | +--Drosophila (1) | | | | | +--Drosophila kikkawai (1) | | | +--Viridiplantae (2) | | | +--Streptophyta (2) | | | +--Embryophyta (2) | | | +--Tracheophyta (2) | | | +--Spermatophyta (2) | | | +--Magnoliophyta (2) | | | +--Liliopsida (2) | | | +--Poales (2) | | | +--Poaceae (2) | | | +--BEPclade (2) | | | +--Ehrhartoideae (2) | | | +--Oryzeae (2) | | | +--Oryza sativa Indica Group (2) | +--Bacteria (271) | +--Actinobacteria (1) | | | +--Acidimicrobidae (1) | | | +--Acidimicrobiales (1) | | | +--Acidimicrobineae (1) | | | +--Acidimicrobiaceae (1) | | | +--Ilumatobacter fluminis (1) | +--Proteobacteria (136) | | | +--Alphaproteobacteria (27) | | | | | +--Rhizobiales (12) | | | | | | | +--unclassifiedRhizobiales (1) | | | | | | | | | +--Pseudorhodoplanes sinuspersici (1) | | | | | | | +--Hyphomicrobiaceae (1) | | | | | | | | | +--Devosia chinhatensis (1) | | | | | | | +--Rhizobiaceae (7) | | | | | | | | | +--Rhizobium/Agrobacteriumgroup (6) | | | | | | | | | | | +--Agrobacterium vitis S4 (2) | | | | | | | | | | | +--Rhizobium daejeonense (2) | | | | | | | | | | | +--Rhizobium sp. RU36D (2) | | | | | | | | | +--Sinorhizobium/Ensifergroup (1) | | | | | | | | | +--Sinorhizobium meliloti 1021 (1) | | | | | | | +--Bradyrhizobiaceae (1) | | | | | | | | | +--Rhodopseudomonas sp. R-45977 (1) | | | | | | | +--Phyllobacteriaceae (2) | | | | | | | +--Mesorhizobium sp. B7 (2) | | | | | +--Rhodospirillales (5) | | | | | | | +--Acetobacteraceae (4) | | | | | | | | | +--Roseomonas sp. N75 (1) | | | | | | | | | +--Acetobacter pomorum DM001 (1) | | | | | | | | | +--Roseomonas rosea (1) | | | | | | | | | +--Gluconacetobacter saccharivorans (1) | | | | | | | +--Rhodospirillaceae (1) | | | | | | | +--Telmatospirillum siberiense (1) | | | | | +--Rhodobacterales (10) | | | | | +--Rhodobacteraceae (10) | | | | | +--Yangia sp. CCB-MM3 (1) | | | | | +--Aquimixticola soesokkakensis (1) | | | | | +--Haematobacter massiliensis (2) | | | | | +--Labrenzia aggregata (1) | | | | | +--Ponticoccus sp. SJ5A-1 (1) | | | | | +--Pannonibacter phragmitetus (1) | | | | | +--Celeribacter indicus (1) | | | | | +--Paracoccus aestuarii (2) | | | +--Gammaproteobacteria (43) | | | | | +--Alteromonadales (8) | | | | | | | +--Alteromonadaceae (8) | | | | | | | +--Marinobacterium stanieri (2) | | | | | | | +--Alteromonas lipolytica (1) | | | | | | | +--Marinobacterium nitratireducens (4) | | | | | | | +--Marinobacter lutaoensis (1) | | | | | +--Vibrionales (11) | | | | | | | +--Vibrionaceae (11) | | | | | | | +--Vibrio sp. qd031 (1) | | | | | | | +--Vibrio sp. G21 (3) | | | | | | | +--Vibrio furnissii (3) | | | | | | | +--Vibrio (2) | | | | | | | | | +--Vibrio rumoiensis 1S-45 (2) | | | | | | | +--Photobacterium halotolerans (2) | | | | | +--Enterobacterales (3) | | | | | | | +--Yersiniaceae (1) | | | | | | | | | +--Rahnella (1) | | | | | | | | | +--Rahnella aquatilis CIP 78.65 = ATCC 33071 (1) | | | | | | | +--Enterobacteriaceae (2) | | | | | | | +--Mangrovibacter sp. MFB070 (2) | | | | | +--Enterobacteriales (4) | | | | | | | +--Enterobacteriaceae (4) | | | | | | | +--Serratia sp. ATCC 39006 (1) | | | | | | | +--Erwinia billingiae (1) | | | | | | | +--Enterobacter gergoviae (2) | | | | | +--Oceanospirillales (5) | | | | | | | +--Hahellaceae (1) | | | | | | | | | +--Endozoicomonas elysicola (1) | | | | | | | +--Oleiphilaceae (2) | | | | | | | | | +--Oleiphilus messinensis (2) | | | | | | | +--Halomonadaceae (1) | | | | | | | | | +--Halotalea alkalilenta (1) | | | | | | | +--Oceanospirillaceae (1) | | | | | | | +--Marinomonas (1) | | | | | | | +--Marinomonas ushuaiensis DSM 15871 (1) | | | | | +--Pseudomonadales (12) | | | | | +--Pseudomonadaceae (5) | | | | | | | +--Pseudomonas pachastrellae (2) | | | | | | | +--Pseudomonas sp. M47T1 (1) | | | | | | | +--Pseudomonas putida KT2440 (2) | | | | | +--Moraxellaceae (7) | | | | | +--Acinetobacter sp. ADP1 (2) | | | | | +--Acinetobacter populi (3) | | | | | +--Acinetobacter marinus (2) | | | +--Betaproteobacteria (66) | | | +--Burkholderiales (64) | | | | | +--Alcaligenaceae (2) | | | | | | | +--Pigmentiphaga litoralis (2) | | | | | +--Thiomonas sp. S10 (1) | | | | | +--Rubrivivax sp. (2) | | | | | +--Tepidicella xavieri (2) | | | | | +--unclassifiedBurkholderiales (3) | | | | | | | +--BurkholderialesGeneraincertaesedis (3) | | | | | | | +--Xylophilus sp. Leaf220 (3) | | | | | +--Oxalobacteraceae (1) | | | | | | | +--Herbaspirillum seropedicae SmR1 (1) | | | | | +--Leptothrix mobilis (2) | | | | | +--Burkholderiaceae (14) | | | | | | | +--Burkholderia phenazinium (1) | | | | | | | +--Burkholderia xenovorans LB400 (1) | | | | | | | +--Cupriavidus basilensis (1) | | | | | | | +--Burkholderia sp. TNe-841 (1) | | | | | | | +--Burkholderia sp. Leaf177 (1) | | | | | | | +--Cupriavidus sp. USMAA2-4 (3) | | | | | | | +--Burkholderia graminis C4D1M (1) | | | | | | | +--Cupriavidus metallidurans CH34 (1) | | | | | | | +--Ralstonia eutropha H16 (2) | | | | | | | +--Cupriavidus sp. HPC(L) (1) | | | | | | | +--Burkholderia tropica (1) | | | | | +--Methylibium sp. NS21 (1) | | | | | +--Ideonella dechloratans (1) | | | | | +--Comamonadaceae (35) | | | | | +--Lampropedia cohaerens (2) | | | | | +--Hylemonella gracilis ATCC 19624 (2) | | | | | +--Comamonas terrigena (2) | | | | | +--Acidovorax temperans (1) | | | | | +--Acidovorax sp. Leaf160 (2) | | | | | +--Delftia acidovorans SPH-1 (2) | | | | | +--Acidovorax valerianellae (2) | | | | | +--Pseudacidovorax intermedius (2) | | | | | +--Variovorax sp. JS1663 (2) | | | | | +--Variovorax paradoxus (3) | | | | | +--Acidovorax avenae subsp. avenae ATCC 19860 (2) | | | | | +--Acidovorax sp. CF316 (2) | | | | | +--Hydrogenophaga sp. IBVHS1 (2) | | | | | +--Variovorax sp. PAMC 28711 (2) | | | | | +--Comamonas (2) | | | | | | | +--Comamonas aquatica DA1877 (2) | | | | | +--Variovorax sp. Root473 (2) | | | | | +--Acidovorax sp. MR-S7 (2) | | | | | +--Rhodoferax saidenbachensis (1) | | | +--Rhodocyclales (2) | | | +--Rhodocyclaceae (2) | | | +--Azoarcus indigens (2) | +--Terrabacteriagroup (1) | | | +--Actinobacteria (1) | | | +--Acidimicrobiia (1) | | | +--Acidimicrobiales (1) | | | +--Acidimicrobiaceae (1) | | | +--Ilumatobacter (1) | | | +--Ilumatobacter coccineus YM16-304 (1) | +--Pseudomonadota (133) | +--Alphaproteobacteria (29) | | | +--Hyphomicrobiales (12) | | | | | +--Stappiaceae (1) | | | | | | | +--Labrenzia (1) | | | | | | | +--Labrenzia sp. 011 (1) | | | | | +--Rhizobiaceae (2) | | | | | | | +--Ciceribacter (2) | | | | | | | +--Ciceribacter sp. L1K22 (2) | | | | | +--Aurantimonadaceae (2) | | | | | | | +--Jiella endophytica (2) | | | | | +--Segnochrobactraceae (1) | | | | | | | +--Segnochrobactrum spirostomi (1) | | | | | +--Phyllobacteriaceae (6) | | | | | +--Zhengella mangrovi (2) | | | | | +--Aquibium carbonis (2) | | | | | +--Chelativorans petroleitrophicus (2) | | | +--Rhodospirillales (3) | | | | | +--Acetobacteraceae (3) | | | | | +--Pararoseomonas indoligenes (1) | | | | | +--Roseomonas nepalensis (1) | | | | | +--Endobacter medicaginis (1) | | | +--Rhodobacterales (14) | | | +--Roseobacteraceae (1) | | | | | +--Roseibacterium persicicum (1) | | | +--Rhodobacterales bacterium (1) | | | +--Paracoccaceae (12) | | | +--Qingshengfaniella alkalisoli (1) | | | +--Mangrovicoccus algicola (1) | | | +--Meridianimarinicoccus roseus (1) | | | +--Pseudooceanicola spongiae (1) | | | +--Paracoccus liaowanqingii (2) | | | +--Paracoccus aestuariivivens (2) | | | +--Pseudooceanicola algae (1) | | | +--Tritonibacter litoralis (1) | | | +--Marinibacterium profundimaris (1) | | | +--Pseudooceanicola albus (1) | +--Gammaproteobacteria (31) | | | +--Alteromonadales (3) | | | | | +--Alteromonadaceae (3) | | | | | +--Hydrocarboniclastica marina (2) | | | | | +--Alginatibacterium sediminis (1) | | | +--Vibrionales (5) | | | | | +--Vibrionaceae (5) | | | | | +--Vibrio viridaestus (2) | | | | | +--Vibrio ziniensis (3) | | | +--Enterobacterales (3) | | | | | +--Yersiniaceae (1) | | | | | | | +--Rouxiella badensis (1) | | | | | +--Enterobacteriaceae (1) | | | | | | | +--Klebsiella/Raoultellagroup (1) | | | | | | | +--Klebsiella (1) | | | | | | | +--Klebsiellapneumoniae (1) | | | | | | | +--Klebsiella pneumoniae subsp. pneumoniae (strain HS11286) (1) | | | | | +--Erwiniaceae (1) | | | | | +--Pantoea (1) | | | | | +--Pantoea sp. Eser (1) | | | +--Cellvibrionales (1) | | | | | +--Halieaceae (1) | | | | | +--Haliea (1) | | | | | +--Haliea sp. (1) | | | +--Moraxellales (1) | | | | | +--Moraxellaceae (1) | | | | | +--Aquirhabdus parva (1) | | | +--Oceanospirillales (9) | | | | | +--Natronospirillaceae (1) | | | | | | | +--Natronospirillum operosum (1) | | | | | +--Saccharospirillaceae (1) | | | | | | | +--Saccharospirillum (1) | | | | | | | +--Saccharospirillum sp. MSK14-1 (1) | | | | | +--Halomonadaceae (2) | | | | | | | +--Halomonas (2) | | | | | | | +--Halomonas sp. PA5 (2) | | | | | +--Oceanospirillaceae (5) | | | | | +--Thalassolituus (2) | | | | | | | +--Thalassolituus sp. C2-1 (2) | | | | | +--Marinomonas transparens (2) | | | | | +--Marinomonas piezotolerans (1) | | | +--Pseudomonadales (9) | | | +--Marinobacteraceae (2) | | | | | +--Marinobacter (2) | | | | | +--Marinobacter sp. R17 (2) | | | +--Pseudomonadaceae (7) | | | +--Pseudomonas (5) | | | | | +--Pseudomonas sp. OIL-1 (2) | | | | | +--Pseudomonas sp. GV071 (1) | | | | | +--Pseudomonas sp. SSM44 (2) | | | +--Halopseudomonas laoshanensis (2) | +--Betaproteobacteria (73) | +--Burkholderiales (67) | | | +--Burkholderialesgeneraincertaesedis (7) | | | | | +--Thiomonas (1) | | | | | | | +--Thiomonas sp. X19 (1) | | | | | +--Xylophilus rhododendri (2) | | | | | +--Aquabacterium lacunae (1) | | | | | +--Aquabacterium olei (1) | | | | | +--Aquabacterium soli (2) | | | +--Alcaligenaceae (7) | | | | | +--Pigmentiphaga (2) | | | | | | | +--Pigmentiphaga sp. NML030171 (2) | | | | | +--Verticiella sediminum (4) | | | | | +--Derxia (1) | | | | | +--Derxia gummosa DSM 723 (1) | | | +--Burkholderiaceae (5) | | | | | +--Cupriavidus (2) | | | | | | | +--Cupriavidus gilardii J11 (2) | | | | | +--Cupriavidus agavae (1) | | | | | +--Paraburkholderia fynbosensis (1) | | | | | +--Pararobbsia silviterrae (1) | | | +--Sphaerotilaceae (2) | | | | | +--Piscinibacter (1) | | | | | | | +--Piscinibacter sp. HJYY11 (1) | | | | | +--Rubrivivax pictus (1) | | | +--Oxalobacteraceae (4) | | | | | +--Noviherbaspirillum pedocola (1) | | | | | +--Herbaspirillum (2) | | | | | | | +--Herbaspirillum sp. Sphag64 (1) | | | | | | | +--Herbaspirillum sp. meg3 (1) | | | | | +--Noviherbaspirillum humi (1) | | | +--Comamonadaceae (42) | | | +--Ramlibacter pinisoli (1) | | | +--Hydrogenophaga (4) | | | | | +--Hydrogenophaga sp. BPS33 (2) | | | | | +--Hydrogenophaga sp. RAC07 (2) | | | +--Ramlibacter aurantiacus (1) | | | +--Variovorax (13) | | | | | +--Variovorax sp. PDC80 (2) | | | | | +--Variovorax sp. CF079 (2) | | | | | +--Variovorax sp. (3) | | | | | +--Variovorax sp. OV329 (1) | | | | | +--Variovorax sp. Sphag1AA (2) | | | | | +--Variovorax sp. PAMC28562 (1) | | | | | +--Variovorax sp. MHTC-1 (2) | | | +--Paenacidovorax monticola (2) | | | +--Hydrogenophaga crocea (2) | | | +--Variovorax terrae (2) | | | +--Variovorax gossypii (2) | | | +--Ramlibacter rhizophilus (1) | | | +--Comamonas suwonensis (2) | | | +--Ramlibacter cellulosilyticus (1) | | | +--Corticibacter populi (2) | | | +--Ramlibacter agri (1) | | | +--Comamonas (4) | | | | | +--Comamonas sp. 26 (2) | | | | | +--Comamonas sp. BIGb0124 (2) | | | +--Caenimonas sedimenti (1) | | | +--Comamonas antarctica (1) | | | +--Ottowia oryzae (2) | +--Rhodocyclales (4) | | | +--Rhodocyclaceae (1) | | | | | +--Azospira inquinata (1) | | | +--Zoogloeaceae (3) | | | +--Uliginosibacterium (1) | | | | | +--Uliginosibacterium sp. TH139 (1) | | | +--Parazoarcus (2) | | | +--Parazoarcus communis SWub3 = DSM 12120 (2) | +--Neisseriales (2) | +--Neisseriaceae (2) | +--Craterilacuibacter sinensis (2)