# Species tree for RF02344 # Generated from Rfam version 15.00 | +--Eukaryota (15) | | | +--Sar (8) | | | | | +--Alveolata (8) | | | | | +--Dinophyceae (8) | | | | | +--Suessiales (8) | | | | | +--Symbiodiniaceae (8) | | | | | +--Effrenium voratum (8) | | | +--Metazoa (3) | | | | | +--Chordata (2) | | | | | | | +--Craniata (2) | | | | | | | +--Vertebrata (2) | | | | | | | +--Euteleostomi (2) | | | | | | | +--Archosauria (2) | | | | | | | +--Dinosauria (2) | | | | | | | +--Saurischia (2) | | | | | | | +--Theropoda (2) | | | | | | | +--Coelurosauria (2) | | | | | | | +--Aves (2) | | | | | | | +--Neognathae (2) | | | | | | | +--Anseriformes (1) | | | | | | | | | +--Anatidae (1) | | | | | | | | | +--Anser cygnoides (Chinese goose) (1) | | | | | | | +--Cuculiformes (1) | | | | | | | +--Coccyzidae (1) | | | | | | | +--Piaya cayana (squirrel cuckoo) (1) | | | | | +--Arthropoda (1) | | | | | +--Crustacea (1) | | | | | +--Ostracoda (1) | | | | | +--Podocopa (1) | | | | | +--Podocopida (1) | | | | | +--Darwinulocopina (1) | | | | | +--Darwinuloidea (1) | | | | | +--Darwinulidae (1) | | | | | +--Darwinula stevensoni (1) | | | +--Viridiplantae (4) | | | +--Streptophyta (4) | | | +--Embryophyta (4) | | | +--Tracheophyta (4) | | | +--Spermatophyta (4) | | | +--Magnoliophyta (4) | | | +--eudicotyledons (4) | | | +--coreeudicotyledons (4) | | | +--Caryophyllales (4) | | | +--Amaranthaceae (4) | | | +--Beta vulgaris subsp. vulgaris (4) | +--Bacteria (793) | +--Proteobacteria (425) | | | +--Alphaproteobacteria (420) | | | | | +--Polymorphum gilvum SL003B-26A1 (2) | | | | | +--Rhizobiales (344) | | | | | | | +--Bartonellaceae (2) | | | | | | | | | +--Bartonella apis (1) | | | | | | | | | +--Bartonella (1) | | | | | | | | | +--Bartonella tamiae Th239 (1) | | | | | | | +--Brucellaceae (27) | | | | | | | | | +--Paenochrobactrum gallinarii (2) | | | | | | | | | +--Ochrobactrum (5) | | | | | | | | | | | +--Ochrobactrum intermedium 229E (5) | | | | | | | | | +--Pseudochrobactrum saccharolyticum (2) | | | | | | | | | +--Brucella melitensis biovar Abortus 2308 (2) | | | | | | | | | +--Ochrobactrum rhizosphaerae (5) | | | | | | | | | +--Ochrobactrum gallinifaecis (4) | | | | | | | | | +--Ochrobactrum anthropi ATCC 49188 (5) | | | | | | | | | +--Mycoplana dimorpha (2) | | | | | | | +--Aurantimonadaceae (33) | | | | | | | | | +--Aurantimonas manganoxydans SI85-9A1 (3) | | | | | | | | | +--Martelella sp. AD-3 (3) | | | | | | | | | +--Aurantimonas altamirensis (1) | | | | | | | | | +--Aureimonas sp. Leaf454 (4) | | | | | | | | | +--Aurantimonas sp. Leaf443 (2) | | | | | | | | | +--Martelella endophytica (3) | | | | | | | | | +--Aureimonas sp. Leaf324 (4) | | | | | | | | | +--Aureimonas sp. AU20 (1) | | | | | | | | | +--Aureimonas sp. Leaf460 (5) | | | | | | | | | +--Fulvimarina pelagi HTCC2506 (1) | | | | | | | | | +--Martelella (3) | | | | | | | | | | | +--Martelella mediterranea DSM 17316 (3) | | | | | | | | | +--Martelella mediterranea (3) | | | | | | | +--Phyllobacteriaceae (104) | | | | | | | | | +--Pseudaminobacter salicylatoxidans (4) | | | | | | | | | +--Hoeflea marina (2) | | | | | | | | | +--Mesorhizobium sp. LC103 (4) | | | | | | | | | +--Mesorhizobium sp. ORS3428 (4) | | | | | | | | | +--Phyllobacterium myrsinacearum (4) | | | | | | | | | +--Hoeflea olei (1) | | | | | | | | | +--Mesorhizobium australicum (4) | | | | | | | | | +--Mesorhizobium sp. LSHC420B00 (4) | | | | | | | | | +--Mesorhizobium albiziae (4) | | | | | | | | | +--Mesorhizobium sp. Root554 (3) | | | | | | | | | +--Pseudaminobacter manganicus (3) | | | | | | | | | +--Aquamicrobium lusatiense (3) | | | | | | | | | +--Mesorhizobium sp. BD68 (3) | | | | | | | | | +--Aminobacter sp. MSH1 (5) | | | | | | | | | +--Hoeflea phototrophica DFL-43 (1) | | | | | | | | | +--Phyllobacterium leguminum (4) | | | | | | | | | +--Mesorhizobium sp. WSM3876 (5) | | | | | | | | | +--Nitratireductor (5) | | | | | | | | | | | +--Nitratireductor indicus C115 (5) | | | | | | | | | +--Mesorhizobium australicum WSM2073 (5) | | | | | | | | | +--Nitratireductor sp. Pht-3B (4) | | | | | | | | | +--Nitratireductor basaltis (1) | | | | | | | | | +--Phyllobacterium sp. YR531 (5) | | | | | | | | | +--Mesorhizobium sp. B7 (2) | | | | | | | | | +--Mesorhizobium sp. UASWS1009 (5) | | | | | | | | | +--Mesorhizobium sp. Root157 (4) | | | | | | | | | +--Paramesorhizobium deserti (6) | | | | | | | | | +--Mesorhizobium (6) | | | | | | | | | | | +--Mesorhizobium alhagi CCNWXJ12-2 (6) | | | | | | | | | +--Hoeflea sp. IMCC20628 (2) | | | | | | | | | +--Hoeflea sp. JG120-1 (1) | | | | | | | +--unclassifiedRhizobiales (1) | | | | | | | | | +--Candidatus Tokpelaia hoelldoblerii (1) | | | | | | | +--Hyphomicrobiaceae (5) | | | | | | | | | +--Maritalea myrionectae (1) | | | | | | | | | +--Prosthecomicrobium pneumaticum (2) | | | | | | | | | +--Prosthecomicrobium litoralum (2) | | | | | | | +--Cohaesibacter gelatinilyticus (1) | | | | | | | +--Rhizobiaceae (168) | | | | | | | | | +--Kaistia (4) | | | | | | | | | | | +--Kaistia soli DSM 19436 (4) | | | | | | | | | +--Shinella sp. DC-196 (3) | | | | | | | | | +--Rhizobium/Agrobacteriumgroup (135) | | | | | | | | | | | +--Rhizobium alkalisoli (5) | | | | | | | | | | | +--Rhizobium sp. Leaf306 (5) | | | | | | | | | | | +--Rhizobium sp. Root482 (4) | | | | | | | | | | | +--Rhizobium borbori (3) | | | | | | | | | | | +--Rhizobium tibeticum (6) | | | | | | | | | | | +--Rhizobium sp. RU36D (5) | | | | | | | | | | | +--Rhizobium sp. Root149 (5) | | | | | | | | | | | +--Rhizobium sp. YS-1r (3) | | | | | | | | | | | +--Rhizobium oryzae (5) | | | | | | | | | | | +--Rhizobium sp. NT-26 (4) | | | | | | | | | | | +--Rhizobium (5) | | | | | | | | | | | | | +--Rhizobiumgallicum (5) | | | | | | | | | | | | | +--Rhizobium gallicum bv. gallicum R602 (5) | | | | | | | | | | | +--Rhizobium giardinii (8) | | | | | | | | | | | +--Rhizobium sp. CCBAU 85046 (6) | | | | | | | | | | | +--Rhizobium oryziradicis (4) | | | | | | | | | | | +--Rhizobium etli CFN 42 (6) | | | | | | | | | | | +--Rhizobium sp. Leaf371 (5) | | | | | | | | | | | +--Pseudorhizobium pelagicum (5) | | | | | | | | | | | +--Agrobacterium vitis S4 (6) | | | | | | | | | | | +--Rhizobium cellulosilyticum (6) | | | | | | | | | | | +--Rhizobium phaseoli (7) | | | | | | | | | | | +--Agrobacterium (2) | | | | | | | | | | | | | +--Agrobacterium albertimagni AOL15 (2) | | | | | | | | | | | +--Rhizobium daejeonense (3) | | | | | | | | | | | +--Pararhizobium polonicum (6) | | | | | | | | | | | +--Rhizobium sp. Root1212 (4) | | | | | | | | | | | +--Rhizobium sp. JC85 (4) | | | | | | | | | | | +--Agrobacterium tumefaciens str. C58 (3) | | | | | | | | | | | +--Rhizobium sp. LC145 (5) | | | | | | | | | | | +--Rhizobium sp. PDO1-076 (5) | | | | | | | | | +--Sinorhizobium/Ensifergroup (26) | | | | | | | | | +--Sinorhizobium terangae (5) | | | | | | | | | +--Sinorhizobium saheli (7) | | | | | | | | | +--Sinorhizobium meliloti 1021 (6) | | | | | | | | | +--Ensifer sp. YIC4027 (4) | | | | | | | | | +--Sinorhizobium fredii NGR234 (4) | | | | | | | +--Cohaesibacter sp. DQHS-21 (3) | | | | | +--Rhizobiales bacterium 8.047 (5) | | | | | +--Rhodobacterales (69) | | | | | +--Rhodobacteraceae (69) | | | | | +--Maliponia aquimaris (1) | | | | | +--Loktanella koreensis (1) | | | | | +--Loktanella tamlensis (1) | | | | | +--Oceanicola nanhaiensis (1) | | | | | +--Thioclava indica (1) | | | | | +--Roseisalinus antarcticus (1) | | | | | +--Antarctobacter heliothermus (1) | | | | | +--Palleronia marisminoris (2) | | | | | +--Halocynthiibacter arcticus (1) | | | | | +--Sulfitobacter pseudonitzschiae (1) | | | | | +--Thalassobius mediterraneus (1) | | | | | +--Litoreibacter (1) | | | | | | | +--Litoreibacter arenae DSM 19593 (1) | | | | | +--Roseibium hamelinense (1) | | | | | +--Thioclava dalianensis (1) | | | | | +--Stappia sp. CC-SPIO-10 (2) | | | | | +--Rhodovulum thermophilus (1) | | | | | +--Donghicola xiamenensis (1) | | | | | +--Paracoccus aminovorans (1) | | | | | +--Loktanella marina (2) | | | | | +--Paracoccus (2) | | | | | | | +--Paracoccus aminophilus JCM 7686 (2) | | | | | +--Pseudopelagicola gijangensis (1) | | | | | +--Paracoccus thiocyanatus (1) | | | | | +--Paracoccus halophilus (1) | | | | | +--Thioclava (1) | | | | | | | +--Thioclava pacifica DSM 10166 (1) | | | | | +--Loktanella sp. 3ANDIMAR09 (1) | | | | | +--Candidatus Rhodobacter lobularis (1) | | | | | +--Ahrensia marina (1) | | | | | +--Stappia indica (2) | | | | | +--Oceanicola granulosus HTCC2516 (1) | | | | | +--Roseibium sp. TrichSKD4 (1) | | | | | +--Loktanella salsilacus (2) | | | | | +--Paracoccus sp. NB88 (2) | | | | | +--Labrenzia sp. YC6927 (3) | | | | | +--Catellibacterium aquatile (2) | | | | | +--Tropicibacter naphthalenivorans (1) | | | | | +--Ketogulonicigenium robustum (1) | | | | | +--Antarctobacter sp. JLT354-W (1) | | | | | +--Oceanicola marinus (1) | | | | | +--Aestuariivita atlantica (1) | | | | | +--Roseivivax sp. BH87090 (1) | | | | | +--Loktanella fryxellensis (1) | | | | | +--Paracoccus sp. MJ17 (1) | | | | | +--Paracoccus sp. J56 (1) | | | | | +--Ketogulonigenium vulgarum WSH-001 (1) | | | | | +--Rhodobacteraceae bacterium PD-2 (1) | | | | | +--Loktanella atrilutea (1) | | | | | +--Donghicola sp. KarMa (1) | | | | | +--Ahrensia sp. R2A130 (1) | | | | | +--Paracoccus denitrificans PD1222 (1) | | | | | +--Loktanella sediminum (1) | | | | | +--Labrenzia aggregata (1) | | | | | +--Labrenzia alba (2) | | | | | +--Rhodobacter sp. LPB0142 (1) | | | | | +--Pannonibacter phragmitetus (2) | | | | | +--Roseovarius crassostreae (1) | | | | | +--Stappia sp. ES.058 (2) | | | +--alpha proteobacterium KMM 9023 (1) | | | +--alpha proteobacterium UBF-P1 (4) | +--Pseudomonadota (368) | +--Alphaproteobacteria (368) | +--Hyphomicrobiales (332) | | | +--Breoghaniaceae (2) | | | | | +--Breoghania (2) | | | | | +--Breoghania sp. L-A4 (2) | | | +--Brucellaceae (11) | | | | | +--Falsochrobactrum shanghaiense (4) | | | | | +--Falsochrobactrum ovis (3) | | | | | +--Brucella/Ochrobactrumgroup (4) | | | | | +--Brucella endophytica (4) | | | +--Hyphomicrobialesincertaesedis (2) | | | | | +--Tokpelaia (2) | | | | | +--Candidatus Tokpelaia sp. JSC161 (1) | | | | | +--Candidatus Tokpelaia sp. JSC085 (1) | | | +--Pleomorphomonadaceae (2) | | | | | +--Hartmannibacter diazotrophicus (1) | | | | | +--Pleomorphomonas diazotrophica (1) | | | +--Stappiaceae (10) | | | | | +--Roseibium aquae (1) | | | | | +--Stappia sediminis (1) | | | | | +--Labrenzia (3) | | | | | | | +--Labrenzia sp. THAF82 (2) | | | | | | | +--Labrenzia sp. 011 (1) | | | | | +--Roseibium alexandrii (1) | | | | | +--Stappia albiluteola (2) | | | | | +--Pannonibacter (2) | | | | | +--Pannonibacter sp. XCT-53 (2) | | | +--Devosiaceae (1) | | | | | +--Pelagibacterium lentulum (1) | | | +--Aurantimonadaceae (23) | | | | | +--Aureimonas endophytica (3) | | | | | +--Aureimonas fodinaquatilis (1) | | | | | +--Aureimonas jatrophae (1) | | | | | +--Aureimonas glaciei (1) | | | | | +--Martelella alba (4) | | | | | +--Fulvimarina endophytica (2) | | | | | +--Aurantimonas aggregata (2) | | | | | +--Jiella endophytica (1) | | | | | +--Aurantimonas marianensis (1) | | | | | +--Aureimonas leprariae (6) | | | | | +--Aureimonas pseudogalii (1) | | | +--Phyllobacteriaceae (131) | | | | | +--Mesorhizobium microcysteis (4) | | | | | +--Hoeflea prorocentri (2) | | | | | +--Mesorhizobium zhangyense (6) | | | | | +--Phyllobacterium (4) | | | | | | | +--Phyllobacterium sp. YR620 (4) | | | | | +--Aquibium carbonis (2) | | | | | +--Phyllobacterium endophyticum (6) | | | | | +--Mesorhizobium waimense (6) | | | | | +--Nitratireductor aestuarii (7) | | | | | +--Oricola cellulosilytica (2) | | | | | +--Nitratireductor mangrovi (2) | | | | | +--Tianweitania populi (4) | | | | | +--Roseitalea porphyridii (2) | | | | | +--Oricola thermophila (2) | | | | | +--Chelativorans petroleitrophicus (2) | | | | | +--Mesorhizobium wenxiniae (4) | | | | | +--Nitratireductor (2) | | | | | | | +--Nitratireductor sp. StC3 (2) | | | | | +--Mesorhizobium ephedrae (5) | | | | | +--Mesorhizobium denitrificans (2) | | | | | +--Phyllobacterium zundukense (6) | | | | | +--Zhengella mangrovi (2) | | | | | +--Tianweitania sediminis (2) | | | | | +--Pseudaminobacter arsenicus (4) | | | | | +--Mesorhizobium (25) | | | | | | | +--Mesorhizobium sp. NBSH29 (2) | | | | | | | +--Mesorhizobium sp. J18 (3) | | | | | | | +--Mesorhizobium sp. 8 (4) | | | | | | | +--Mesorhizobium sp. (1) | | | | | | | +--Mesorhizobium sp. YM1C-6-2 (4) | | | | | | | +--Mesorhizobium sp. Root172 (5) | | | | | | | +--Mesorhizobium sp. L-8-10 (6) | | | | | +--Aquamicrobium (3) | | | | | | | +--Aquamicrobium aerolatum DSM 21857 (3) | | | | | +--Oryzicola mucosus (7) | | | | | +--Mesorhizobium soli (4) | | | | | +--Pseudohoeflea suaedae (1) | | | | | +--Pseudaminobacter soli (6) | | | | | +--Mesorhizobium sanjuanii (3) | | | | | +--Aminobacter (4) | | | | | +--Aminobacter sp. J15 (4) | | | +--Hyphomicrobiaceae (4) | | | | | +--Limoniibacter endophyticus (4) | | | +--Notoacmeibacteraceae (1) | | | | | +--Notoacmeibacter marinus (1) | | | +--Kaistiaceae (5) | | | | | +--Kaistia (3) | | | | | | | +--Kaistia sp. 32K (3) | | | | | +--Kaistia hirudinis (2) | | | +--Rhizobiaceae (134) | | | | | +--Ciceribacter (4) | | | | | | | +--Ciceribacter sp. L1K22 (2) | | | | | | | +--Ciceribacter selenitireducens ATCC BAA-1503 (2) | | | | | +--Ciceribacter lividus (2) | | | | | +--Sinorhizobium/Ensifergroup (8) | | | | | | | +--Ensifer (5) | | | | | | | | | +--Ensifer sp. M14 (5) | | | | | | | +--Sinorhizobium (3) | | | | | | | +--Sinorhizobium sp. BG8 (3) | | | | | +--Endobacterium cereale (5) | | | | | +--Shinella (3) | | | | | | | +--Shinella sp. WSJ-2 (3) | | | | | +--Rhizobium/Agrobacteriumgroup (104) | | | | | | | +--Rhizobium straminoryzae (4) | | | | | | | +--Neorhizobium lilium (4) | | | | | | | +--Rhizobium deserti (4) | | | | | | | +--Pararhizobium mangrovi (2) | | | | | | | +--Agrobacterium (3) | | | | | | | | | +--Agrobacterium sp. AGB01 (3) | | | | | | | +--Rhizobium metallidurans (6) | | | | | | | +--Rhizobium (48) | | | | | | | | | +--Rhizobium sp. JAB6 (3) | | | | | | | | | +--Rhizobium sp. RU20A (3) | | | | | | | | | +--Rhizobium sp. NFR07 (8) | | | | | | | | | +--Rhizobium sp. SEMIA4064 (3) | | | | | | | | | +--Rhizobium sp. BK275 (4) | | | | | | | | | +--Rhizobium sp. AC44/96 (5) | | | | | | | | | +--Rhizobium sp. BK251 (4) | | | | | | | | | +--Rhizobium sp. P32RR-XVIII (9) | | | | | | | | | +--Rhizobium sp. BG4 (4) | | | | | | | | | +--Rhizobium sp. BK376 (5) | | | | | | | +--Pararhizobium antarcticum (6) | | | | | | | +--Rhizobium setariae (4) | | | | | | | +--Rhizobium tumorigenes (4) | | | | | | | +--Neorhizobium (12) | | | | | | | | | +--Neorhizobium sp. SOG26 (4) | | | | | | | | | +--Neorhizobium sp. S3-V5DH (3) | | | | | | | | | +--Neorhizobiumgalegae (5) | | | | | | | | | +--Neorhizobium galegae bv. orientalis str. HAMBI 540 (5) | | | | | | | +--Agrobacterium bohemicum (3) | | | | | | | +--Rhizobium album (4) | | | | | +--Gellertiella hungarica (3) | | | | | +--Georhizobium profundi (2) | | | | | +--Mycoplana azooxidifex (3) | | | +--Cohaesibacteraceae (6) | | | +--Cohaesibacter celericrescens (2) | | | +--Cohaesibacter (4) | | | +--Cohaesibacter sp. ES.047 (2) | | | +--Cohaesibacter sp. CAU 1516 (2) | +--Rhodobacterales (36) | +--Rhodobacterales bacterium (2) | +--Roseobacteraceae (9) | | | +--Maritimibacter fusiformis (1) | | | +--Salibaculum griseiflavum (1) | | | +--Thalassococcus profundi (1) | | | +--Octadecabacter (2) | | | | | +--Octadecabacter sp. SW4 (2) | | | +--Palleronia abyssalis (1) | | | +--Litoreibacter ponti (1) | | | +--Salipiger (1) | | | | | +--Salipiger sp. IMCC34102 (1) | | | +--Oceanicola (1) | | | +--Oceanicola sp. 22II-s10i (1) | +--Paracoccaceae (25) | +--Marivivensgroup (5) | | | +--Marivivens niveibacter (3) | | | +--Marivivens (2) | | | +--Marivivens sp. JLT3646 (2) | +--Pseudothioclava arenosa (1) | +--Yoonia litorea (1) | +--Paracoccaceae bacterium (1) | +--Paracoccus aurantiacus (1) | +--Aliiroseovarius sediminilitoris (1) | +--Gemmobacter fulvus (1) | +--Pseudooceanicola lipolyticus (1) | +--Pseudooceanicola algae (1) | +--Antarcticimicrobium sediminis (1) | +--Pelagovum pacificum (1) | +--Falsigemmobacter intermedius (1) | +--Fuscibacter oryzae (1) | +--Litorivita pollutaquae (1) | +--Pseudooceanicola spongiae (1) | +--Gemmobacter lutimaris (1) | +--Aliiroseovarius pelagivivens (1) | +--Paracoccus shanxieyensis (2) | +--Pseudoroseicyclus aestuarii (1) | +--Marinibacterium profundimaris (1)