# Species tree for RF01057 # Generated from Rfam version 15.00 | +--bacterium M-07 (1) | +--Eukaryota (23) | | | +--Alveolata (1) | | | | | +--Apicomplexa (1) | | | | | +--Aconoidasida (1) | | | | | +--Haemosporida (1) | | | | | +--Plasmodium (1) | | | | | +--Plasmodium yoelii yoelii (1) | | | +--Metazoa (9) | | | | | +--Nematoda (1) | | | | | | | +--Chromadorea (1) | | | | | | | +--Rhabditida (1) | | | | | | | +--Strongylida (1) | | | | | | | +--Strongyloidea (1) | | | | | | | +--Strongylidae (1) | | | | | | | +--Cyathostominae (1) | | | | | | | +--Cylicocyclus nassatus (1) | | | | | +--Chordata (5) | | | | | | | +--Craniata (5) | | | | | | | +--Vertebrata (5) | | | | | | | +--Euteleostomi (5) | | | | | | | +--Testudines (5) | | | | | | | +--Cryptodira (5) | | | | | | | +--Testudinoidea (5) | | | | | | | +--Chelydridae (5) | | | | | | | +--Platysternon megacephalum (big-headed turtle) (5) | | | | | +--Arthropoda (3) | | | | | +--Crustacea (3) | | | | | +--Ostracoda (3) | | | | | +--Podocopa (3) | | | | | +--Podocopida (3) | | | | | +--Darwinulocopina (3) | | | | | +--Darwinuloidea (3) | | | | | +--Darwinulidae (3) | | | | | +--Darwinula stevensoni (3) | | | +--Fungi (5) | | | | | +--Dikarya (1) | | | | | | | +--Ascomycota (1) | | | | | | | +--Pezizomycotina (1) | | | | | | | +--Eurotiomycetes (1) | | | | | | | +--Chaetothyriomycetidae (1) | | | | | | | +--Chaetothyriales (1) | | | | | | | +--Herpotrichiellaceae (1) | | | | | | | +--Capronia peltigerae (1) | | | | | +--Fungiincertaesedis (4) | | | | | +--Basalfungallineages (4) | | | | | +--Mucoromycotina (4) | | | | | +--Mucorales (3) | | | | | | | +--Mucoraceae (3) | | | | | | | +--Rhizopus delemar (2) | | | | | | | +--Rhizopus oryzae (1) | | | | | +--Mortierellales (1) | | | | | +--Mortierellaceae (1) | | | | | +--Mortierella gamsii (1) | | | +--Rhizaria (1) | | | | | +--Foraminifera (1) | | | | | +--Reticulomyxidae (1) | | | | | +--Reticulomyxa filosa (1) | | | +--Viridiplantae (6) | | | | | +--Streptophyta (6) | | | | | +--Embryophyta (5) | | | | | | | +--Tracheophyta (5) | | | | | | | +--Spermatophyta (5) | | | | | | | +--Magnoliophyta (5) | | | | | | | +--eudicotyledons (5) | | | | | | | +--coreeudicotyledons (4) | | | | | | | | | +--rosids (2) | | | | | | | | | | | +--malvids (2) | | | | | | | | | | | +--Malvales (2) | | | | | | | | | | | +--Malvaceae (2) | | | | | | | | | | | +--Grewioideae (2) | | | | | | | | | | | +--Corchorus olitorius (2) | | | | | | | | | +--asterids (2) | | | | | | | | | +--lamiids (2) | | | | | | | | | +--Lamiales (2) | | | | | | | | | +--Gesneriaceae (2) | | | | | | | | | +--Cyrtandroideae (2) | | | | | | | | | +--Didymocarpeae (2) | | | | | | | | | +--Boea hygrometrica (2) | | | | | | | +--Ranunculales (1) | | | | | | | +--Papaveraceae (1) | | | | | | | +--Papaver nudicaule (1) | | | | | +--Streptophytina (1) | | | | | +--Zygnemophyceae (1) | | | | | +--Zygnematophycidae (1) | | | | | +--Desmidiales (1) | | | | | +--Closteriaceae (1) | | | | | +--Closterium (1) | | | | | +--Closteriumperacerosum-strigosum-littoralecomplex (1) | | | | | +--Closterium sp. NIES-67 (1) | | | +--Opisthokonta (1) | | | +--Fungi (1) | | | +--Fungiincertaesedis (1) | | | +--Mucoromycota (1) | | | +--Mucoromycotina (1) | | | +--Mucoromycetes (1) | | | +--Mucorales (1) | | | +--Mucorineae (1) | | | +--Mucoraceae (1) | | | +--Apophysomyces (1) | | | +--Apophysomyces sp. BC1034 (1) | +--Bacteria (1348) | | | +--Actinobacteria (74) | | | | | +--Actinobacteridae (74) | | | | | +--Actinomycetales (74) | | | | | +--Propionibacterineae (4) | | | | | | | +--Nocardioidaceae (4) | | | | | | | +--Kribbella sp. XMU198 (1) | | | | | | | +--Kribbella flavida DSM 17836 (1) | | | | | | | +--Nocardioides sp. (1) | | | | | | | +--Marmoricola sp. Gsoil 818 (1) | | | | | +--Streptosporangineae (10) | | | | | | | +--Thermomonosporaceae (4) | | | | | | | | | +--Actinomadura coerulea (1) | | | | | | | | | +--Actinoallomurus iriomotensis (1) | | | | | | | | | +--Actinomadura verrucosospora (1) | | | | | | | | | +--Actinomadura latina (1) | | | | | | | +--Streptosporangiaceae (6) | | | | | | | +--Streptosporangium roseum DSM 43021 (1) | | | | | | | +--Streptosporangium album (1) | | | | | | | +--Planobispora longispora (1) | | | | | | | +--Microbispora sp. NN276 (1) | | | | | | | +--Streptosporangium carneum (1) | | | | | | | +--Planobispora rosea (1) | | | | | +--Pseudonocardineae (28) | | | | | | | +--Actinosynnemataceae (5) | | | | | | | | | +--Saccharothrix algeriensis (1) | | | | | | | | | +--Lentzea albidocapillata (1) | | | | | | | | | +--Saccharothrix australiensis (1) | | | | | | | | | +--Umezawaea tangerina (1) | | | | | | | | | +--Lechevalieria aerocolonigenes (1) | | | | | | | +--Actinophytocola sp. QAIII60 (1) | | | | | | | +--Pseudonocardiaceae (22) | | | | | | | +--Amycolatopsis sp. SF26 (1) | | | | | | | +--Pseudonocardia thermophila (1) | | | | | | | +--Amycolatopsis mediterranei U32 (1) | | | | | | | +--Kibdelosporangium sp. KLBMP 1111 (2) | | | | | | | +--Kibdelosporangium aridum (2) | | | | | | | +--Actinomycetospora corticicola (1) | | | | | | | +--Amycolatopsis halophila YIM 93223 (1) | | | | | | | +--Amycolatopsis sp. RM579 (1) | | | | | | | +--Pseudonocardia hydrocarbonoxydans (1) | | | | | | | +--Prauserella sp. Ms498 (1) | | | | | | | +--Crossiella cryophila (1) | | | | | | | +--Kutzneria sp. 744 (1) | | | | | | | +--Pseudonocardia endophytica (1) | | | | | | | +--Kutzneria kofuensis (1) | | | | | | | +--Kibdelosporangium albatum (1) | | | | | | | +--Amycolatopsis saalfeldensis (1) | | | | | | | +--Pseudonocardia oroxyli (1) | | | | | | | +--Amycolatopsis sp. KLBMP 1221 (1) | | | | | | | +--Amycolatopsis fastidiosa (1) | | | | | | | +--Pseudonocardia sp. KT2142 (1) | | | | | +--Micromonosporineae (29) | | | | | | | +--Micromonosporaceae bacterium NBRC 104875 (1) | | | | | | | +--Micromonosporaceae (26) | | | | | | | | | +--Dactylosporangium matsuzakiense (1) | | | | | | | | | +--Asanoa sp. 210121 (1) | | | | | | | | | +--Couchioplanes caeruleus subsp. caeruleus (1) | | | | | | | | | +--Longispora fulva (1) | | | | | | | | | +--Actinoplanes digitatis (2) | | | | | | | | | +--Actinoplanes sp. OR16 (1) | | | | | | | | | +--Actinoplanes regularis (2) | | | | | | | | | +--Actinoplanes consettensis (2) | | | | | | | | | +--Actinoplanes philippinensis (1) | | | | | | | | | +--Actinoplanes sp. N902-109 (2) | | | | | | | | | +--Actinoplanes tereljensis (1) | | | | | | | | | +--Actinoplanes sp. SE50/110 (1) | | | | | | | | | +--Pseudosporangium ferrugineum (2) | | | | | | | | | +--Actinoplanes cyaneus (1) | | | | | | | | | +--Actinoplanes utahensis (1) | | | | | | | | | +--Actinoplanes italicus (1) | | | | | | | | | +--Dactylosporangium variesporum (1) | | | | | | | | | +--Micromonospora carbonacea (1) | | | | | | | | | +--Actinoplanes campanulatus (1) | | | | | | | | | +--Actinoplanes ianthinogenes subsp. octamycini (1) | | | | | | | | | +--Actinoplanes derwentensis (1) | | | | | | | +--Micromonosporaceae bacterium Sco-B14 (1) | | | | | | | +--Phytohabitans sp. K11-0047 (1) | | | | | +--Frankineae (3) | | | | | +--Frankiaceae (3) | | | | | +--Frankia sp. EI5c (1) | | | | | +--Frankia alni ACN14a (1) | | | | | +--Frankia sp. R43 (1) | | | +--Bathymodiolus heckerae thiotrophic gill symbiont (1) | | | +--Bdellovibrionota (1) | | | | | +--Oligoflexia (1) | | | | | +--Oligoflexia bacterium (1) | | | +--Proteobacteria (639) | | | | | +--Alphaproteobacteria (3) | | | | | | | +--Rhizobiales (2) | | | | | | | | | +--Hyphomicrobiaceae (1) | | | | | | | | | | | +--Dichotomicrobium thermohalophilum (1) | | | | | | | | | +--Bradyrhizobiaceae (1) | | | | | | | | | +--Bosea sp. TND4EK4 (1) | | | | | | | +--Caulobacterales (1) | | | | | | | +--Caulobacteraceae (1) | | | | | | | +--Caulobacteraceae bacterium OTSz_A_272 (1) | | | | | +--beta proteobacterium MWH-P2sevCIIIb (1) | | | | | +--Thiobacillus prosperus (1) | | | | | +--beta proteobacterium LF4-65 (1) | | | | | +--Deltaproteobacteria (4) | | | | | | | +--Myxococcales (4) | | | | | | | +--Cystobacterineae (4) | | | | | | | +--Cystobacteraceae (3) | | | | | | | | | +--Hyalangium minutum (1) | | | | | | | | | +--Cystobacter ferrugineus (1) | | | | | | | | | +--Stigmatella aurantiaca (1) | | | | | | | +--Myxococcaceae (1) | | | | | | | +--Myxococcus xanthus DK 1622 (1) | | | | | +--Olavius algarvensis Gamma 3 endosymbiont (1) | | | | | +--beta proteobacterium KL-9 (1) | | | | | +--Betaproteobacteria (413) | | | | | | | +--unclassifiedBetaproteobacteria (13) | | | | | | | | | +--beta proteobacterium AAP65 (2) | | | | | | | | | +--Candidatus Accumulibacter aalborgensis (1) | | | | | | | | | +--Betaproteobacteria bacterium MOLA814 (2) | | | | | | | | | +--beta proteobacterium AAP99 (1) | | | | | | | | | +--Candidatus Accumulibacter sp. BA-93 (1) | | | | | | | | | +--Candidatus Accumulibacter sp. BA-94 (1) | | | | | | | | | +--Candidatus Accumulibacter sp. SK-11 (1) | | | | | | | | | +--Betaproteobacteria bacterium UKL13-2 (1) | | | | | | | | | +--Candidatus Accumulibacter sp. SK-02 (1) | | | | | | | | | +--Candidatus Accumulibacter sp. SK-12 (1) | | | | | | | | | +--Betaproteobacteria bacterium SCGC AG-212-J23 (1) | | | | | | | +--Methylophilales (9) | | | | | | | | | +--Methylophilaceae (9) | | | | | | | | | +--Methylovorus glucosetrophus SIP3-4 (1) | | | | | | | | | +--Methylobacillus sp. MM2 (1) | | | | | | | | | +--Methylobacillus flagellatus KT (1) | | | | | | | | | +--Candidatus Methylopumilus planktonicus (1) | | | | | | | | | +--Candidatus Methylopumilus turicensis (1) | | | | | | | | | +--Methylovorus sp. MM1 (1) | | | | | | | | | +--Methylophilaceae bacterium 11 (1) | | | | | | | | | +--Methylotenera versatilis 301 (1) | | | | | | | | | +--Methylotenera mobilis JLW8 (1) | | | | | | | +--Burkholderiales (299) | | | | | | | | | +--Thiomonas sp. S10 (2) | | | | | | | | | +--Rubrivivax sp. (2) | | | | | | | | | +--Tepidicella xavieri (2) | | | | | | | | | +--Roseateles depolymerans (2) | | | | | | | | | +--Tepidimonas taiwanensis (1) | | | | | | | | | +--Leptothrix cholodnii SP-6 (2) | | | | | | | | | +--Comamonadaceae bacterium S4 (2) | | | | | | | | | +--Leptothrix mobilis (1) | | | | | | | | | +--Piscinibacter aquaticus (2) | | | | | | | | | +--Methylibium subsaxonicum (2) | | | | | | | | | +--Comamonadaceae bacterium NML970147 (1) | | | | | | | | | +--Sphaerotilus montanus (1) | | | | | | | | | +--Comamonadaceae (129) | | | | | | | | | | | +--Rhodoferax sp. (2) | | | | | | | | | | | +--Limnohabitans sp. 103DPR2 (2) | | | | | | | | | | | +--Ramlibacter tataouinensis TTB310 (2) | | | | | | | | | | | +--Acidovorax delafieldii 2AN (2) | | | | | | | | | | | +--Acidovorax sp. Leaf160 (2) | | | | | | | | | | | +--Pseudacidovorax intermedius (1) | | | | | | | | | | | +--Variovorax paradoxus (2) | | | | | | | | | | | +--Acidovorax avenae subsp. avenae ATCC 19860 (2) | | | | | | | | | | | +--Acidovorax caeni (2) | | | | | | | | | | | +--Acidovorax sp. CF316 (2) | | | | | | | | | | | +--Variovorax sp. Root473 (2) | | | | | | | | | | | +--Polaromonas vacuolata (2) | | | | | | | | | | | +--Diaphorobacter sp. J5-51 (2) | | | | | | | | | | | +--Pelomonas sp. Root1444 (3) | | | | | | | | | | | +--Acidovorax sp. MR-S7 (2) | | | | | | | | | | | +--Verminephrobacter eiseniae EF01-2 (1) | | | | | | | | | | | +--Rhodoferax saidenbachensis (3) | | | | | | | | | | | +--Pelomonas puraquae (2) | | | | | | | | | | | +--Pelomonas saccharophila (3) | | | | | | | | | | | +--Malikia granosa (2) | | | | | | | | | | | +--Ramlibacter sp. Leaf400 (2) | | | | | | | | | | | +--Hydrogenophaga sp. H7 (1) | | | | | | | | | | | +--Acidovorax anthurii (2) | | | | | | | | | | | +--Rhodoferax koreense (2) | | | | | | | | | | | +--Rhodoferax fermentans (2) | | | | | | | | | | | +--Limnohabitans sp. T6-5 (2) | | | | | | | | | | | +--Variovorax sp. PAMC 28711 (2) | | | | | | | | | | | +--Hydrogenophaga sp. A37 (2) | | | | | | | | | | | +--Comamonadaceae bacterium A1 (1) | | | | | | | | | | | +--Lampropedia (1) | | | | | | | | | | | | | +--Lampropedia hyalina DSM 16112 (1) | | | | | | | | | | | +--Rhodoferax (2) | | | | | | | | | | | | | +--Rhodoferax antarcticus ANT.BR (2) | | | | | | | | | | | +--Comamonas terrigena (2) | | | | | | | | | | | +--Comamonas denitrificans (1) | | | | | | | | | | | +--Delftia acidovorans SPH-1 (2) | | | | | | | | | | | +--Acidovorax sp. RAC01 (2) | | | | | | | | | | | +--Variovorax sp. JS1663 (2) | | | | | | | | | | | +--Rhodoferax ferrireducens T118 (2) | | | | | | | | | | | +--Polaromonas sp. CG9_12 (2) | | | | | | | | | | | +--Variovorax sp. PBL-E5 (2) | | | | | | | | | | | +--Hydrogenophaga crassostreae (2) | | | | | | | | | | | +--Pseudorhodoferax sp. Leaf267 (2) | | | | | | | | | | | +--Limnohabitans sp. Rim28 (2) | | | | | | | | | | | +--Giesbergeria anulus (3) | | | | | | | | | | | +--Comamonas (2) | | | | | | | | | | | | | +--Comamonas aquatica DA1877 (2) | | | | | | | | | | | +--Acidovorax sp. NA3 (2) | | | | | | | | | | | +--Lampropedia cohaerens (1) | | | | | | | | | | | +--Hylemonella gracilis ATCC 19624 (2) | | | | | | | | | | | +--Limnohabitans sp. 2KL-17 (2) | | | | | | | | | | | +--Ramlibacter tataouinensis (2) | | | | | | | | | | | +--Comamonas sp. SP35 (2) | | | | | | | | | | | +--Polaromonas naphthalenivorans CJ2 (2) | | | | | | | | | | | +--Acidovorax sp. 12322-1 (1) | | | | | | | | | | | +--Acidovorax temperans (2) | | | | | | | | | | | +--Pseudorhodoferax sp. Leaf274 (2) | | | | | | | | | | | +--Acidovorax valerianellae (2) | | | | | | | | | | | +--Kinneretia asaccharophila (2) | | | | | | | | | | | +--Schlegelella thermodepolymerans (2) | | | | | | | | | | | +--Variovorax sp. PBS-H4 (3) | | | | | | | | | | | +--Curvibacter sp. PAE-UM (2) | | | | | | | | | | | +--Simplicispira metamorpha (2) | | | | | | | | | | | +--Polaromonas sp. JS666 (2) | | | | | | | | | | | +--Hydrogenophaga sp. IBVHS1 (2) | | | | | | | | | | | +--Ramlibacter sp. BXN5-27 (2) | | | | | | | | | | | +--Limnohabitans sp. 63ED37-2 (2) | | | | | | | | | | | +--Alicycliphilus denitrificans K601 (2) | | | | | | | | | | | +--Limnohabitans sp. B9-3 (2) | | | | | | | | | +--Sphaerotilus natans subsp. sulfidovorans (1) | | | | | | | | | +--Alcaligenaceae (26) | | | | | | | | | | | +--Oligella (1) | | | | | | | | | | | | | +--Oligella urethralis DNF00040 (1) | | | | | | | | | | | +--Pusillimonas sp. MJ07 (1) | | | | | | | | | | | +--Pusillimonas noertemannii (1) | | | | | | | | | | | +--Pusillimonas terrae (1) | | | | | | | | | | | +--Bordetella genomosp. 9 (1) | | | | | | | | | | | +--Bordetella ansorpii (1) | | | | | | | | | | | +--Bordetella pertussis Tohama I (1) | | | | | | | | | | | +--Bordetella hinzii (1) | | | | | | | | | | | +--Alcaligenes sp. EGD-AK7 (1) | | | | | | | | | | | +--Candidimonas nitroreducens (1) | | | | | | | | | | | +--Pusillimonas sp. PB3-7B (1) | | | | | | | | | | | +--Alcaligenes sp. GR24-5 (1) | | | | | | | | | | | +--Bordetella sp. AU9919 (1) | | | | | | | | | | | +--Bordetella sp. N (1) | | | | | | | | | | | +--Pigmentiphaga litoralis (1) | | | | | | | | | | | +--Bordetella sp. H567 (1) | | | | | | | | | | | +--Kerstersia gyiorum (1) | | | | | | | | | | | +--Pelistega indica (1) | | | | | | | | | | | +--Pusillimonas sp. B201 (1) | | | | | | | | | | | +--Castellaniella (1) | | | | | | | | | | | | | +--Castellaniella defragrans 65Phen (1) | | | | | | | | | | | +--Bordetella trematum (1) | | | | | | | | | | | +--Orrella dioscoreae (1) | | | | | | | | | | | +--Bordetella avium 197N (1) | | | | | | | | | | | +--Paenalcaligenes hominis (1) | | | | | | | | | | | +--Pelistega europaea (1) | | | | | | | | | | | +--Advenella (1) | | | | | | | | | | | +--Advenella mimigardefordensis DPN7 (1) | | | | | | | | | +--Oxalobacteraceae bacterium IMCC9480 (1) | | | | | | | | | +--Alcaligenaceae bacterium BZ59 (1) | | | | | | | | | +--Roseateles aquatilis (2) | | | | | | | | | +--Inhella inkyongensis (1) | | | | | | | | | +--Paucibacter toxinivorans (2) | | | | | | | | | +--Thiomonas delicata (1) | | | | | | | | | +--Oxalobacteraceae (27) | | | | | | | | | | | +--Oxalobacter formigenes HOxBLS (1) | | | | | | | | | | | +--Massilia sp. Leaf139 (1) | | | | | | | | | | | +--Duganella sp. Leaf126 (1) | | | | | | | | | | | +--Oxalicibacterium solurbis (1) | | | | | | | | | | | +--Massilia sp. D5 (1) | | | | | | | | | | | +--Janthinobacterium sp. KBS0711 (1) | | | | | | | | | | | +--Massilia sp. KIM (1) | | | | | | | | | | | +--Herbaspirillum seropedicae SmR1 (1) | | | | | | | | | | | +--Janthinobacterium (1) | | | | | | | | | | | | | +--Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 (1) | | | | | | | | | | | +--Herminiimonas arsenicoxydans (1) | | | | | | | | | | | +--Herbaspirillum sp. TSA66 (1) | | | | | | | | | | | +--Oxalobacter formigenes OXCC13 (1) | | | | | | | | | | | +--Collimonas fungivorans Ter331 (1) | | | | | | | | | | | +--Herbaspirillum sp. YR522 (1) | | | | | | | | | | | +--Oxalobacter vibrioformis (1) | | | | | | | | | | | +--Massilia (1) | | | | | | | | | | | | | +--Massilia timonae CCUG 45783 (1) | | | | | | | | | | | +--Massilia sp. CF038 (1) | | | | | | | | | | | +--Herminiimonas fonticola (1) | | | | | | | | | | | +--Noviherbaspirillum sp. Root189 (1) | | | | | | | | | | | +--Duganella sp. Root198D2 (1) | | | | | | | | | | | +--Massilia sp. NR 4-1 (1) | | | | | | | | | | | +--Oxalicibacterium flavum (1) | | | | | | | | | | | +--Massilia sp. 333-1-0411 (1) | | | | | | | | | | | +--Massilia sp. WF1 (1) | | | | | | | | | | | +--Undibacterium oligocarboniphilum (1) | | | | | | | | | | | +--Massilia sp. Root351 (1) | | | | | | | | | | | +--Massilia sp. BSC265 (1) | | | | | | | | | +--unclassifiedBurkholderiales (20) | | | | | | | | | | | +--Burkholderiales bacterium GJ-E10 (1) | | | | | | | | | | | +--BurkholderialesGeneraincertaesedis (19) | | | | | | | | | | | +--Mitsuaria sp. 7 (2) | | | | | | | | | | | +--Ideonella sakaiensis (2) | | | | | | | | | | | +--Aquabacterium sp. NJ1 (1) | | | | | | | | | | | +--Xylophilus sp. Leaf220 (2) | | | | | | | | | | | +--Rhizobacter sp. Root1221 (2) | | | | | | | | | | | +--Rhizobacter sp. Root404 (2) | | | | | | | | | | | +--Rubrivivax (2) | | | | | | | | | | | | | +--Rubrivivax gelatinosus IL144 (2) | | | | | | | | | | | +--Rhizobacter sp. Root29 (2) | | | | | | | | | | | +--Methylibium sp. NZG (2) | | | | | | | | | | | +--Paucibacter sp. KCTC 42545 (2) | | | | | | | | | +--Sphaerotilus hippei (2) | | | | | | | | | +--Aquabacterium commune (1) | | | | | | | | | +--Oxalobacteraceae bacterium Cr9-30 (1) | | | | | | | | | +--Burkholderiaceae (56) | | | | | | | | | | | +--Ralstonia sp. 5_2_56FAA (1) | | | | | | | | | | | +--Burkholderia xenovorans LB400 (1) | | | | | | | | | | | +--Ralstonia sp. PBA (1) | | | | | | | | | | | +--Burkholderia sediminicola (1) | | | | | | | | | | | +--Burkholderia sp. TNe-841 (1) | | | | | | | | | | | +--Paucimonas lemoignei (1) | | | | | | | | | | | +--Paraburkholderia ribeironis (1) | | | | | | | | | | | +--Candidatus Burkholderia kirkii UZHbot1 (1) | | | | | | | | | | | +--Burkholderia graminis C4D1M (1) | | | | | | | | | | | +--Burkholderia glathei (1) | | | | | | | | | | | +--Burkholderia sp. IMER-B1-49 (1) | | | | | | | | | | | +--Polynucleobacter paneuropaeus () (1) | | | | | | | | | | | +--Cupriavidus sp. ASC-64 (1) | | | | | | | | | | | +--Burkholderia sp. LMG 22936 (1) | | | | | | | | | | | +--Burkholderia phenazinium (1) | | | | | | | | | | | +--Burkholderia sp. PO-04-17-38 (1) | | | | | | | | | | | +--Burkholderia phymatum STM815 (2) | | | | | | | | | | | +--Burkholderia sp. SRS-W-2-2016 (1) | | | | | | | | | | | +--Burkholderia sp. NKMU-JPY345 (1) | | | | | | | | | | | +--Burkholderia glumae BGR1 (1) | | | | | | | | | | | +--Cupriavidus metallidurans CH34 (1) | | | | | | | | | | | +--Burkholderia caryophylli (1) | | | | | | | | | | | +--Burkholderia sp. ATSB16 (1) | | | | | | | | | | | +--Limnobacter sp. MED105 (1) | | | | | | | | | | | +--Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 (1) | | | | | | | | | | | +--Cupriavidus basilensis (1) | | | | | | | | | | | +--Ralstonia solanacearum GMI1000 (1) | | | | | | | | | | | +--Paraburkholderia ginsengiterrae (1) | | | | | | | | | | | +--Ralstonia eutropha H16 (1) | | | | | | | | | | | +--Chitinimonas (1) | | | | | | | | | | | | | +--Chitinimonas taiwanensis DSM 18899 (1) | | | | | | | | | | | +--Cupriavidus sp. HPC(L) (1) | | | | | | | | | | | +--Pandoraea pnomenusa (1) | | | | | | | | | | | +--Burkholderia endofungorum (1) | | | | | | | | | | | +--Burkholderia sp. OLGA172 (1) | | | | | | | | | | | +--Burkholderia andropogonis (1) | | | | | | | | | | | +--Burkholderia sp. J1 (1) | | | | | | | | | | | +--Burkholderia sacchari (1) | | | | | | | | | | | +--Burkholderia (6) | | | | | | | | | | | | | +--Burkholderia pseudomallei K96243 (1) | | | | | | | | | | | | | +--Burkholderia singularis (1) | | | | | | | | | | | | | +--Burkholderia glumae PG1 (1) | | | | | | | | | | | | | +--Burkholderia seminalis (1) | | | | | | | | | | | | | +--Burkholderia dolosa AUO158 (1) | | | | | | | | | | | | | +--Burkholderia multivorans ATCC 17616 (1) | | | | | | | | | | | +--Lautropia mirabilis ATCC 51599 (1) | | | | | | | | | | | +--Burkholderia sp. JPY461 (1) | | | | | | | | | | | +--Burkholderia soli (1) | | | | | | | | | | | +--Burkholderia sp. Leaf177 (1) | | | | | | | | | | | +--Burkholderia megapolitana (1) | | | | | | | | | | | +--Cupriavidus sp. USMAA2-4 (1) | | | | | | | | | | | +--Burkholderia sp. IMER-B1-33 (1) | | | | | | | | | | | +--Burkholderia tropica (1) | | | | | | | | | | | +--Ralstonia solanacearum IPO1609 (1) | | | | | | | | | | | +--Burkholderia sp. lig30 (1) | | | | | | | | | | | +--Polynucleobacter sp. VK13 (1) | | | | | | | | | | | +--Candidatus Burkholderia verschuerenii (1) | | | | | | | | | +--Methylibium petroleiphilum PM1 (2) | | | | | | | | | +--Methylibium sp. NS21 (1) | | | | | | | | | +--Ideonella dechloratans (2) | | | | | | | | | +--Sutterellaceae (3) | | | | | | | | | +--Sutterella (3) | | | | | | | | | +--Sutterella wadsworthensis HGA0223 (1) | | | | | | | | | +--Sutterella parvirubra YIT 11816 (1) | | | | | | | | | +--Sutterella sp. CAG:521 (1) | | | | | | | +--Rhodocyclales (43) | | | | | | | | | +--Rhodocyclaceae (43) | | | | | | | | | +--Azoarcus sp. BH72 (2) | | | | | | | | | +--Azoarcus indigens (2) | | | | | | | | | +--Thauera (4) | | | | | | | | | | | +--Thauera linaloolentis 47Lol = DSM 12138 (2) | | | | | | | | | | | +--Thauera terpenica 58Eu (2) | | | | | | | | | +--Dechloromonas denitrificans (2) | | | | | | | | | +--Rugosibacter aromaticivorans (2) | | | | | | | | | +--Methyloversatilis universalis FAM5 (1) | | | | | | | | | +--Petrobacter sp. JHK30 (2) | | | | | | | | | +--Aromatoleum aromaticum EbN1 (2) | | | | | | | | | +--Azoarcus sp. KH32C (2) | | | | | | | | | +--Azoarcus communis (2) | | | | | | | | | +--Denitratisoma oestradiolicum (3) | | | | | | | | | +--Georgfuchsia toluolica (1) | | | | | | | | | +--Thauera sp. 27 (1) | | | | | | | | | +--Azospira restricta (1) | | | | | | | | | +--Azoarcus tolulyticus (2) | | | | | | | | | +--Sterolibacterium denitrificans (1) | | | | | | | | | +--Propionivibrio dicarboxylicus (1) | | | | | | | | | +--Methyloversatilis sp. RAC08 (1) | | | | | | | | | +--Azonexus hydrophilus (2) | | | | | | | | | +--Sulfuritalea (1) | | | | | | | | | | | +--Sulfuritalea hydrogenivorans sk43H (1) | | | | | | | | | +--Zoogloea ramigera (2) | | | | | | | | | +--Rhodocyclus tenuis (1) | | | | | | | | | +--Candidatus Propionivibrio aalborgensis (1) | | | | | | | | | +--Thauera sp. MZ1T (2) | | | | | | | | | +--Azoarcus sp. NSC3 (2) | | | | | | | +--Sulfuricellales (1) | | | | | | | | | +--Sulfuricellaceae (1) | | | | | | | | | +--Sulfuricella (1) | | | | | | | | | +--Sulfuricella denitrificans skB26 (1) | | | | | | | +--Burkholderiales bacterium JOSHI_001 (2) | | | | | | | +--Gallionellales (4) | | | | | | | | | +--Gallionellaceae (4) | | | | | | | | | +--Sideroxydans lithotrophicus ES-1 (1) | | | | | | | | | +--Gallionella capsiferriformans ES-2 (1) | | | | | | | | | +--Ferriphaselus amnicola (1) | | | | | | | | | +--Candidatus Gallionella acididurans (1) | | | | | | | +--Neisseriales (18) | | | | | | | | | +--Chromobacteriaceae (5) | | | | | | | | | | | +--Vogesella sp. EB (1) | | | | | | | | | | | +--Aquaspirillum sp. LM1 (1) | | | | | | | | | | | +--Vogesella sp. LIG4 (1) | | | | | | | | | | | +--Chromobacteriumgroup (1) | | | | | | | | | | | | | +--Chromobacterium sp. LK11 (1) | | | | | | | | | | | +--Andreprevotia (1) | | | | | | | | | | | +--Andreprevotia lacus DSM 23236 (1) | | | | | | | | | +--Neisseriaceae (13) | | | | | | | | | +--Formivibrio citricus (2) | | | | | | | | | +--Pseudogulbenkiania sp. NH8B (1) | | | | | | | | | +--Chromobacterium sp. HT27 (1) | | | | | | | | | +--Laribacter hongkongensis HLHK9 (1) | | | | | | | | | +--Crenobacter luteus (1) | | | | | | | | | +--Vitreoscilla filiformis (1) | | | | | | | | | +--Microvirgula aerodenitrificans (1) | | | | | | | | | +--Vitreoscilla sp. (1) | | | | | | | | | +--Silvimonas terrae (1) | | | | | | | | | +--Chromobacterium violaceum ATCC 12472 (1) | | | | | | | | | +--Jeongeupia sp. HS-3 (1) | | | | | | | | | +--Neisseriaceae bacterium IGB-41 (1) | | | | | | | +--[Polyangium] brachysporum (2) | | | | | | | +--Nitrosomonadales (17) | | | | | | | | | +--Nitrosomonadaceae (16) | | | | | | | | | | | +--Nitrosomonas halophila (1) | | | | | | | | | | | +--Nitrosospira sp. Nsp1 (1) | | | | | | | | | | | +--Nitrosospira multiformis ATCC 25196 (1) | | | | | | | | | | | +--Nitrosomonas communis (1) | | | | | | | | | | | +--Nitrosomonas sp. Nm58 (1) | | | | | | | | | | | +--Nitrosomonas nitrosa (1) | | | | | | | | | | | +--Nitrosospira sp. Nl5 (1) | | | | | | | | | | | +--Nitrosovibrio tenuis (1) | | | | | | | | | | | +--Nitrosomonas oligotropha (1) | | | | | | | | | | | +--Nitrosomonas (1) | | | | | | | | | | | | | +--Nitrosomonas cryotolerans ATCC 49181 (1) | | | | | | | | | | | +--Nitrosovibrio sp. Nv17 (1) | | | | | | | | | | | +--Nitrosomonas sp. Nm51 (1) | | | | | | | | | | | +--Nitrosospira briensis (1) | | | | | | | | | | | +--Nitrosomonas sp. Nm84 (1) | | | | | | | | | | | +--Nitrosomonas europaea ATCC 19718 (1) | | | | | | | | | | | +--Nitrosomonas aestuarii (1) | | | | | | | | | +--Nitrosococcus mobilis (1) | | | | | | | +--Hydrogenophilales (5) | | | | | | | +--Hydrogenophilaceae (5) | | | | | | | +--Thiobacillus plumbophilus (1) | | | | | | | +--Thiobacillus denitrificans (1) | | | | | | | +--Hydrogenophilus thermoluteolus (1) | | | | | | | +--Thiobacillus sp. (1) | | | | | | | +--Thiobacillus denitrificans ATCC 25259 (1) | | | | | +--gamma proteobacterium TUD-JY37 (1) | | | | | +--Olavius algarvensis Gamma 1 endosymbiont (1) | | | | | +--gamma proteobacterium DKE (1) | | | | | +--delta/epsilonsubdivisions (1) | | | | | | | +--Deltaproteobacteria (1) | | | | | | | +--Myxococcales (1) | | | | | | | +--Cystobacterineae (1) | | | | | | | +--Myxococcaceae (1) | | | | | | | +--Corallococcus (1) | | | | | | | +--Corallococcus coralloides DSM 2259 (1) | | | | | +--Zetaproteobacteria (1) | | | | | | | +--Mariprofundales (1) | | | | | | | +--Mariprofundaceae (1) | | | | | | | +--Mariprofundus ferrooxydans PV-1 (1) | | | | | +--gamma proteobacterium SS-5 (1) | | | | | +--gamma proteobacterium NH6-24 (1) | | | | | +--Gammaproteobacteria (205) | | | | | | | +--Solimonas sp. NAA16 (1) | | | | | | | +--Bathymodiolus azoricus thioautotrophic gill symbiont (1) | | | | | | | +--unclassifiedGammaproteobacteria (11) | | | | | | | | | +--Sedimenticola thiotaurini (1) | | | | | | | | | +--Competibacteraceae (2) | | | | | | | | | | | +--CandidatusCompetibacter (1) | | | | | | | | | | | | | +--Candidatus Competibacter denitrificans Run_A_D11 (1) | | | | | | | | | | | +--CandidatusContendobacter (1) | | | | | | | | | | | +--Candidatus Contendobacter odensis Run_B_J11 (1) | | | | | | | | | +--Candidatus Thioglobus autotrophicus (1) | | | | | | | | | +--Solemya velesiana gill symbiont (1) | | | | | | | | | +--endosymbiont of unidentified scaly snail isolate Monju (1) | | | | | | | | | +--Thiolapillus brandeum (1) | | | | | | | | | +--Solemya elarraichensis gill symbiont (1) | | | | | | | | | +--sulfur-oxidizingsymbionts (2) | | | | | | | | | | | +--Candidatus Thiodiazotropha endolucinida (1) | | | | | | | | | | | +--Candidatus Thiodiazotropha endoloripes (1) | | | | | | | | | +--CandidatusThioglobus (1) | | | | | | | | | +--Candidatus Thioglobus singularis PS1 (1) | | | | | | | +--Solemya velum gill symbiont (1) | | | | | | | +--Arenicella xantha (1) | | | | | | | +--Methylococcales (2) | | | | | | | | | +--Methylococcaceae (2) | | | | | | | | | +--Methylococcus capsulatus str. Bath (1) | | | | | | | | | +--Methylomagnum ishizawai (1) | | | | | | | +--Immundisolibacterales (1) | | | | | | | | | +--Immundisolibacteraceae (1) | | | | | | | | | +--Immundisolibacter cernigliae (1) | | | | | | | +--endosymbiont of Tevnia jerichonana (vent Tica) (1) | | | | | | | +--Xanthomonadales (72) | | | | | | | | | +--Rhodanobacteraceae (10) | | | | | | | | | | | +--Luteibacter sp. UNCMF366Tsu5.1 (1) | | | | | | | | | | | +--Rhodanobacter sp. OK091 (1) | | | | | | | | | | | +--Rhodanobacter sp. C06 (2) | | | | | | | | | | | +--Oleiagrimonas soli (1) | | | | | | | | | | | +--Rhodanobacter sp. B05 (1) | | | | | | | | | | | +--Rhodanobacter (2) | | | | | | | | | | | | | +--Rhodanobacter fulvus Jip2 (1) | | | | | | | | | | | | | +--Rhodanobacter spathiphylli B39 (1) | | | | | | | | | | | +--Frateuria (1) | | | | | | | | | | | | | +--Frateuria aurantia DSM 6220 (1) | | | | | | | | | | | +--Dokdonella (1) | | | | | | | | | | | +--Dokdonella koreensis DS-123 (1) | | | | | | | | | +--Sinobacteraceae (2) | | | | | | | | | | | +--Steroidobacter denitrificans (1) | | | | | | | | | | | +--Steroidobacter sp. ZUMI 37 (1) | | | | | | | | | +--Xanthomonadaceae (59) | | | | | | | | | | | +--Dyella sp. ATSB10 (1) | | | | | | | | | | | +--Aquimonas voraii (1) | | | | | | | | | | | +--Pseudoxanthomonas sp. Root65 (1) | | | | | | | | | | | +--Rhodanobacter thiooxydans (2) | | | | | | | | | | | +--Lysobacter enzymogenes (2) | | | | | | | | | | | +--Frateuria terrea (1) | | | | | | | | | | | +--Luteimonas aestuarii (1) | | | | | | | | | | | +--Luteimonas sp. JM171 (1) | | | | | | | | | | | +--Xanthomonas (1) | | | | | | | | | | | | | +--Xanthomonas albilineans GPE PC73 (1) | | | | | | | | | | | +--Lysobacter sp. Root96 (1) | | | | | | | | | | | +--Lysobacter sp. Root494 (1) | | | | | | | | | | | +--Pseudoxanthomonas broegbernensis (1) | | | | | | | | | | | +--Dokdonella sp. LM 2-5 (2) | | | | | | | | | | | +--Stenotrophomonas terrae (1) | | | | | | | | | | | +--Dokdonella sp. CC-YHH031 (1) | | | | | | | | | | | +--Lysobacter sp. ZLD-29 (1) | | | | | | | | | | | +--Pseudoxanthomonas dokdonensis (1) | | | | | | | | | | | +--Luteimonas sp. Y4 (1) | | | | | | | | | | | +--Xanthomonas oryzae pv. oryzae KACC10331 (1) | | | | | | | | | | | +--Stenotrophomonas daejeonensis (1) | | | | | | | | | | | +--Rhodanobacter lindaniclasticus (1) | | | | | | | | | | | +--Pseudoxanthomonas sp. XC21-2 (1) | | | | | | | | | | | +--Dokdonella sp. PYM5-11 (1) | | | | | | | | | | | +--Pseudoxanthomonas spadix BD-a59 (1) | | | | | | | | | | | +--Dyella soli (2) | | | | | | | | | | | +--Stenotrophomonas sp. BIIR7 (1) | | | | | | | | | | | +--Pseudoxanthomonas suwonensis (1) | | | | | | | | | | | +--Stenotrophomonas panacihumi (1) | | | | | | | | | | | +--Stenotrophomonas (1) | | | | | | | | | | | | | +--Stenotrophomonas maltophilia K279a (1) | | | | | | | | | | | +--Lysobacter sp. ZS79 (1) | | | | | | | | | | | +--Xanthomonas campestris pv. campestris str. ATCC 33913 (1) | | | | | | | | | | | +--Rhodanobacter sp. MO64 (1) | | | | | | | | | | | +--Pseudofulvimonas gallinarii (1) | | | | | | | | | | | +--Pseudoxanthomonas sp. P15 (1) | | | | | | | | | | | +--Arenimonas (4) | | | | | | | | | | | | | +--Arenimonas donghaensis DSM 18148 = HO3-R19 (1) | | | | | | | | | | | | | +--Arenimonas oryziterrae DSM 21050 = YC6267 (1) | | | | | | | | | | | | | +--Arenimonas composti TR7-09 = DSM 18010 (1) | | | | | | | | | | | | | +--Arenimonas metalli CF5-1 (1) | | | | | | | | | | | +--Thermomonas hydrothermalis (1) | | | | | | | | | | | +--Pseudoxanthomonas taiwanensis (1) | | | | | | | | | | | +--Lysobacter sp. A03 (1) | | | | | | | | | | | +--Luteimonas sp. FCS-9 (1) | | | | | | | | | | | +--Lysobacter soli (1) | | | | | | | | | | | +--Stenotrophomonas koreensis (1) | | | | | | | | | | | +--Thermomonas haemolytica (1) | | | | | | | | | | | +--Lysobacter antibioticus (2) | | | | | | | | | | | +--Luteimonas marina (1) | | | | | | | | | | | +--Fulvimonas soli (1) | | | | | | | | | | | +--Luteibacter anthropi (1) | | | | | | | | | | | +--Lysobacter (5) | | | | | | | | | | | +--Lysobacter daejeonensis GH1-9 (1) | | | | | | | | | | | +--Lysobacter concretionis Ko07 = DSM 16239 (1) | | | | | | | | | | | +--Lysobacter defluvii IMMIB APB-9 = DSM 18482 (1) | | | | | | | | | | | +--Lysobacter dokdonensis DS-58 (1) | | | | | | | | | | | +--Lysobacter spongiicola DSM 21749 (1) | | | | | | | | | +--Pseudomonas boreopolis (1) | | | | | | | +--Chromatiales (32) | | | | | | | | | +--Ectothiorhodospiraceae (11) | | | | | | | | | | | +--Ectothiorhodospira sp. B7-7 (1) | | | | | | | | | | | +--Alkalilimnicola ehrlichii MLHE-1 (1) | | | | | | | | | | | +--Aquisalimonas asiatica (1) | | | | | | | | | | | +--Thioalkalivibrio sulfidophilus HL-EbGr7 (1) | | | | | | | | | | | +--Thioalkalivibrio denitrificans (1) | | | | | | | | | | | +--Nitrococcus mobilis Nb-231 (1) | | | | | | | | | | | +--Spiribacter (1) | | | | | | | | | | | | | +--Spiribacter salinus M19-40 (1) | | | | | | | | | | | +--Thioalkalivibrio versutus (1) | | | | | | | | | | | +--Ectothiorhodosinus mongolicus (1) | | | | | | | | | | | +--Spiribacter curvatus (1) | | | | | | | | | | | +--Ectothiorhodospira mobilis (1) | | | | | | | | | +--Chromatiaceae (16) | | | | | | | | | | | +--Chromatium okenii (2) | | | | | | | | | | | +--Candidatus Tenderia electrophaga (1) | | | | | | | | | | | +--Thiobaca trueperi (1) | | | | | | | | | | | +--Allochromatium warmingii (1) | | | | | | | | | | | +--Allochromatium vinosum DSM 180 (1) | | | | | | | | | | | +--Thiorhodococcus minor (1) | | | | | | | | | | | +--Thiocapsa marina 5811 (1) | | | | | | | | | | | +--Thiohalocapsa (1) | | | | | | | | | | | | | +--uncultured Thiohalocapsa sp. PB-PSB1 (1) | | | | | | | | | | | +--Marichromatium purpuratum 984 (1) | | | | | | | | | | | +--Thiorhodovibrio sp. 970 (1) | | | | | | | | | | | +--Thiocapsa imhoffii (1) | | | | | | | | | | | +--Lamprobacter modestohalophilus (1) | | | | | | | | | | | +--Thiocystis violascens DSM 198 (1) | | | | | | | | | | | +--Thioflavicoccus (1) | | | | | | | | | | | | | +--Thioflavicoccus mobilis 8321 (1) | | | | | | | | | | | +--Thiohalocapsa marina (1) | | | | | | | | | +--Thioalkalispiraceae (1) | | | | | | | | | | | +--Thiohalophilus thiocyanatoxydans (1) | | | | | | | | | +--Halothiobacillaceae (3) | | | | | | | | | | | +--Halothiobacillus sp. XI15 (1) | | | | | | | | | | | +--Halothiobacillus neapolitanus c2 (1) | | | | | | | | | | | +--Halothiobacillus sp. LS2 (1) | | | | | | | | | +--Ectothiorhodospiraceae bacterium Su4 (1) | | | | | | | +--Thiotrichales (16) | | | | | | | | | +--Thiotrichaceae (8) | | | | | | | | | | | +--Thiothrix unzii (1) | | | | | | | | | | | +--Cocleimonas flava (1) | | | | | | | | | | | +--Thiothrix caldifontis (1) | | | | | | | | | | | +--Thiothrix nivea DSM 5205 (1) | | | | | | | | | | | +--Thiothrix eikelboomii (2) | | | | | | | | | | | +--Achromatium sp. WMS1 (1) | | | | | | | | | | | +--Achromatium sp. WMS3 (1) | | | | | | | | | +--Piscirickettsiaceae (8) | | | | | | | | | +--Methylophaga thiooxydans DMS010 (1) | | | | | | | | | +--Cycloclasticus sp. symbiont of Poecilosclerida sp. N (1) | | | | | | | | | +--Methylophaga sp. JAM7 (1) | | | | | | | | | +--Methylophaga murata (1) | | | | | | | | | +--Cycloclasticus sp. P1 (1) | | | | | | | | | +--Cycloclasticus sp. symbiont of Poecilosclerida sp. M (1) | | | | | | | | | +--Methylophaga aminisulfidivorans MP (1) | | | | | | | | | +--Methylophaga (1) | | | | | | | | | +--Methylophaga lonarensis MPL (1) | | | | | | | +--Acidithiobacillales (3) | | | | | | | | | +--Acidithiobacillaceae (3) | | | | | | | | | +--Acidithiobacillus ferrooxidans ATCC 23270 (1) | | | | | | | | | +--Acidithiobacillus sp. SH (1) | | | | | | | | | +--Acidithiobacillus caldus SM-1 (1) | | | | | | | +--Oceanospirillales (17) | | | | | | | | | +--Oceanospirillum multiglobuliferum (1) | | | | | | | | | +--Alcanivoracaceae bacterium MOLA 115 (1) | | | | | | | | | +--Oceanospirillum linum (1) | | | | | | | | | +--Oceanospirillaceae (1) | | | | | | | | | | | +--Marinospirillum (1) | | | | | | | | | | | +--Marinospirillum alkaliphilum DSM 21637 (1) | | | | | | | | | +--Pseudospirillum japonicum (1) | | | | | | | | | +--Halomonadaceae (10) | | | | | | | | | | | +--Kushneria marisflavi (1) | | | | | | | | | | | +--Halomonas sp. 1513 (1) | | | | | | | | | | | +--Halomonas muralis (1) | | | | | | | | | | | +--Halomonas sp. A-1 (1) | | | | | | | | | | | +--Halomonas (2) | | | | | | | | | | | | | +--Halomonas ilicicola DSM 19980 (1) | | | | | | | | | | | | | +--Halomonas anticariensis FP35 = DSM 16096 (1) | | | | | | | | | | | +--Modicisalibacter sp. YIM 90637 (2) | | | | | | | | | | | +--Kushneria sp. Z35 (2) | | | | | | | | | +--Alcanivoracaceae (1) | | | | | | | | | | | +--Alcanivorax sp. W11-5 (1) | | | | | | | | | +--unclassifiedOceanospirillales (1) | | | | | | | | | +--SUP05cluster (1) | | | | | | | | | +--uncultured SUP05 cluster bacterium (1) | | | | | | | +--Thiohalomonas denitrificans (1) | | | | | | | +--Pseudomonadales (45) | | | | | | | +--Pseudomonadaceae (43) | | | | | | | | | +--Pseudomonas sp. M30-35 (1) | | | | | | | | | +--Pseudomonas salomonii (1) | | | | | | | | | +--Pseudomonas aeruginosa PAO1 (1) | | | | | | | | | +--Pseudomonas sp. StFLB209 (1) | | | | | | | | | +--Rugamonas rubra (1) | | | | | | | | | +--Serpens flexibilis (1) | | | | | | | | | +--Pseudomonas jinjuensis (1) | | | | | | | | | +--Pseudomonas saudiphocaensis (1) | | | | | | | | | +--Pseudomonas fluorescens SBW25 (1) | | | | | | | | | +--Pseudomonas japonica (1) | | | | | | | | | +--Pseudomonas benzenivorans (1) | | | | | | | | | +--Pseudomonas stutzeri A1501 (1) | | | | | | | | | +--Pseudomonas indica (1) | | | | | | | | | +--Pseudomonas sp. FeS53a (1) | | | | | | | | | +--Pseudomonas syringae pv. tomato str. DC3000 (1) | | | | | | | | | +--Pseudomonas sp. M47T1 (1) | | | | | | | | | +--Pseudomonas sp. 21C1 (1) | | | | | | | | | +--Pseudomonas (3) | | | | | | | | | | | +--Pseudomonasaeruginosagroup (1) | | | | | | | | | | | | | +--Pseudomonas resinovorans NBRC 106553 (1) | | | | | | | | | | | +--Pseudomonas knackmussii B13 (1) | | | | | | | | | | | +--Pseudomonas taeanensis MS-3 (1) | | | | | | | | | +--Pseudomonas graminis (1) | | | | | | | | | +--Pseudomonas oryzihabitans (1) | | | | | | | | | +--Pseudomonas asplenii (1) | | | | | | | | | +--Pseudomonas fulva 12-X (1) | | | | | | | | | +--Pseudomonas pachastrellae (1) | | | | | | | | | +--Oblitimonas alkaliphila (1) | | | | | | | | | +--Pseudomonas corrugata (1) | | | | | | | | | +--Pseudomonas fluorescens HK44 (1) | | | | | | | | | +--Pseudomonas xinjiangensis (1) | | | | | | | | | +--Pseudomonas panipatensis (1) | | | | | | | | | +--Pseudomonas putida KT2440 (1) | | | | | | | | | +--Pseudomonas agarici (1) | | | | | | | | | +--Pseudomonas sp. TTU2014-080ASC (1) | | | | | | | | | +--Pseudomonas pohangensis (1) | | | | | | | | | +--Pseudomonas cremoricolorata (1) | | | | | | | | | +--Pseudomonas stutzeri (1) | | | | | | | | | +--Pseudomonas rhizosphaerae (1) | | | | | | | | | +--Pseudomonas sp. HPB0071 (1) | | | | | | | | | +--Pseudomonas guineae (1) | | | | | | | | | +--Pseudomonas sp. BAY1663 (1) | | | | | | | | | +--Pseudomonas hussainii (1) | | | | | | | | | +--Azomonas agilis (1) | | | | | | | | | +--Azomonas macrocytogenes (1) | | | | | | | +--Moraxellaceae bacterium RL-2 (1) | | | | | | | +--Ventosimonadaceae (1) | | | | | | | +--Ventosimonas gracilis (1) | | | | | +--gamma proteobacterium BW-2 (1) | | | | | +--gamma proteobacterium HRh1 (1) | | | +--Armatimonadetes (2) | | | | | +--Fimbriimonas ginsengisoli Gsoil 348 (1) | | | | | +--Armatimonadia (1) | | | | | +--Armatimonadales (1) | | | | | +--Armatimonadaceae (1) | | | | | +--Armatimonas rosea (1) | | | +--Planctomycetes (2) | | | | | +--Planctomycetacia (2) | | | | | +--Planctomycetales (2) | | | | | +--Isosphaera-like str. OJF2 (1) | | | | | +--Planctomycetaceae (1) | | | | | +--Gemmata obscuriglobus (1) | | | +--Myxococcota (3) | | | | | +--Myxococcia (3) | | | | | +--Myxococcales (3) | | | | | +--Cystobacterineae (3) | | | | | +--Archangiaceae (3) | | | | | +--Vitiosangium (1) | | | | | | | +--Vitiosangium sp. (strain GDMCC 1.1324) (1) | | | | | +--Melittangium (1) | | | | | | | +--Melittangium boletus DSM 14713 (1) | | | | | +--Archangium (1) | | | | | +--Archangium sp. Cb G35 (1) | | | +--Firmicutes (1) | | | | | +--Lactobacillales (1) | | | | | +--Carnobacteriaceae (1) | | | | | +--Agitococcus lubricus (1) | | | +--Pseudomonadota (556) | | | | | +--Acidithiobacillia (2) | | | | | | | +--Acidithiobacillales (2) | | | | | | | +--Acidithiobacillaceae (2) | | | | | | | +--Acidithiobacillus sulfuriphilus (1) | | | | | | | +--Acidithiobacillus ferrianus (1) | | | | | +--Alphaproteobacteria (3) | | | | | | | +--Caulobacterales (1) | | | | | | | | | +--Caulobacteraceae (1) | | | | | | | | | +--Terricaulis silvestris (1) | | | | | | | +--alpha proteobacterium U9-1i (1) | | | | | | | +--Hyphomonadales (1) | | | | | | | +--Hyphomonadaceae (1) | | | | | | | +--Hyphomonadaceae bacterium (1) | | | | | +--Gammaproteobacteria (140) | | | | | | | +--Steroidobacterales (2) | | | | | | | | | +--Steroidobacteraceae (2) | | | | | | | | | +--Steroidobacter agaridevorans (1) | | | | | | | | | +--Steroidobacteraceae bacterium (1) | | | | | | | +--Moraxellales (3) | | | | | | | | | +--Moraxellaceae (3) | | | | | | | | | +--Amnimonas aquatica (1) | | | | | | | | | +--Moraxellaceae bacterium (1) | | | | | | | | | +--Fluviicoccus keumensis (1) | | | | | | | +--Nevskiales (5) | | | | | | | | | +--Nevskiaceae (5) | | | | | | | | | +--Sinimarinibacterium (1) | | | | | | | | | | | +--Sinimarinibacterium sp. CAU 1509 (1) | | | | | | | | | +--Solimonas terrae (1) | | | | | | | | | +--Solimonas marina (1) | | | | | | | | | +--Stenotrophobium rhamnosiphilum (1) | | | | | | | | | +--Stagnimonas aquatica (1) | | | | | | | +--Methylococcales (4) | | | | | | | | | +--Methylococcaceae (4) | | | | | | | | | +--Candidatus Methylospira mobilis (1) | | | | | | | | | +--Methylogaea oryzae (1) | | | | | | | | | +--Methylocaldum marinum (1) | | | | | | | | | +--Methylococcus (1) | | | | | | | | | +--Methylococcus sp. EFPC2 (1) | | | | | | | +--Acidiferrobacterales (2) | | | | | | | | | +--Acidiferrobacteraceae (2) | | | | | | | | | +--Sulfuricaulis limicola (1) | | | | | | | | | +--Sulfurifustis variabilis (1) | | | | | | | +--Gammaproteobacteriaincertaesedis (3) | | | | | | | | | +--endosymbiont of Galathealinum brachiosum (1) | | | | | | | | | +--endosymbiont of Escarpia spicata (1) | | | | | | | | | +--CandidatusCompetibacteraceae (1) | | | | | | | | | +--Plasticicumulans lactativorans (1) | | | | | | | +--Cellvibrionales (2) | | | | | | | | | +--Halieaceae (2) | | | | | | | | | +--Haliea (2) | | | | | | | | | +--Haliea sp. (2) | | | | | | | +--Xanthomonadales (57) | | | | | | | | | +--Rhodanobacteraceae (16) | | | | | | | | | | | +--Aerosticca soli (1) | | | | | | | | | | | +--Luteibacter (1) | | | | | | | | | | | | | +--Luteibacter sp. Sphag1AF (1) | | | | | | | | | | | +--Dyella (4) | | | | | | | | | | | | | +--Dyella sp. OK004 (2) | | | | | | | | | | | | | +--Dyella sp. M7H15-1 (1) | | | | | | | | | | | | | +--Dyella sp. AD56 (1) | | | | | | | | | | | +--Tahibacter soli (1) | | | | | | | | | | | +--Ahniella affigens (1) | | | | | | | | | | | +--Mizugakiibacter sediminis (1) | | | | | | | | | | | +--Rhodanobacter (2) | | | | | | | | | | | | | +--Rhodanobacter sp. MP7CTX1 (1) | | | | | | | | | | | | | +--Rhodanobacter sp. ANJX3 (1) | | | | | | | | | | | +--Dyella dinghuensis (1) | | | | | | | | | | | +--Dyella choica (1) | | | | | | | | | | | +--Dokdonella (1) | | | | | | | | | | | | | +--Dokdonella sp. (1) | | | | | | | | | | | +--Dyella tabacisoli (2) | | | | | | | | | +--Xanthomonadaceae (41) | | | | | | | | | +--Lysobacter lycopersici (1) | | | | | | | | | +--Lysobacter oculi (1) | | | | | | | | | +--Lysobacter maris (1) | | | | | | | | | +--Lysobacter solisilvae (1) | | | | | | | | | +--Luteimonas granuli (1) | | | | | | | | | +--Xanthomonas (1) | | | | | | | | | | | +--Xanthomonas sp. XNM01 (1) | | | | | | | | | +--Pseudoxanthomonas (2) | | | | | | | | | | | +--Pseudoxanthomonas sp. CF125 (1) | | | | | | | | | | | +--Pseudoxanthomonas sp. (1) | | | | | | | | | +--Arenimonas maotaiensis (1) | | | | | | | | | +--Lysobacter alkalisoli (1) | | | | | | | | | +--Alkalisalibacterium limincola (1) | | | | | | | | | +--Coralloluteibacterium stylophorae (1) | | | | | | | | | +--Pseudoxanthomonas helianthi (1) | | | | | | | | | +--Thermomonas carbonis (1) | | | | | | | | | +--Stenotrophomonas tumulicola (1) | | | | | | | | | +--Luteimonas weifangensis (1) | | | | | | | | | +--Rehaibacterium terrae (1) | | | | | | | | | +--Lysobacter psychrotolerans (1) | | | | | | | | | +--Xanthomonadaceae bacterium (1) | | | | | | | | | +--Vulcaniibacterium tengchongense (1) | | | | | | | | | +--Lysobacter silvestris (1) | | | | | | | | | +--Pseudoxanthomonas composti (1) | | | | | | | | | +--Xanthomonadaceae bacterium NML03-0222 (1) | | | | | | | | | +--Lysobacter pythonis (1) | | | | | | | | | +--Luteimonas gilva (1) | | | | | | | | | +--Lysobacter penaei (1) | | | | | | | | | +--Pseudoxanthomonas winnipegensis (1) | | | | | | | | | +--Thermomonas (1) | | | | | | | | | | | +--Thermomonas sp. HDW16 (1) | | | | | | | | | +--Arenimonas (1) | | | | | | | | | | | +--Arenimonas sp. (1) | | | | | | | | | +--Arenimonas fontis (1) | | | | | | | | | +--Vulcaniibacterium thermophilum (1) | | | | | | | | | +--Silanimonas (1) | | | | | | | | | | | +--Silanimonas sp. (1) | | | | | | | | | +--Luteimonas salinisoli (1) | | | | | | | | | +--Luteimonas (3) | | | | | | | | | | | +--Luteimonas sp. J16 (1) | | | | | | | | | | | +--Luteimonas sp. (1) | | | | | | | | | | | +--Luteimonas sp. MC1825 (1) | | | | | | | | | +--Luteimonas yindakuii (1) | | | | | | | | | +--Luteimonas chenhongjianii (1) | | | | | | | | | +--Lysobacter (3) | | | | | | | | | +--Lysobacter sp. N42 (1) | | | | | | | | | +--Lysobacter sp. TY2-98 (1) | | | | | | | | | +--Lysobacter sp. (1) | | | | | | | +--Gammaproteobacteria bacterium ESL0073 (1) | | | | | | | +--Chromatiales (15) | | | | | | | | | +--Ectothiorhodospiraceae (10) | | | | | | | | | | | +--Spiribacter salilacus (1) | | | | | | | | | | | +--Acidihalobacter ferrooxydans (1) | | | | | | | | | | | +--Acidihalobacter aeolianus (1) | | | | | | | | | | | +--Thiogranum longum (1) | | | | | | | | | | | +--Thioalkalivibrio (1) | | | | | | | | | | | | | +--Thioalkalivibrio paradoxus ARh 1 (1) | | | | | | | | | | | +--Spiribacter (1) | | | | | | | | | | | | | +--Spiribacter sp. 2438 (1) | | | | | | | | | | | +--Spiribacter halobius (1) | | | | | | | | | | | +--Aquisalimonas (1) | | | | | | | | | | | | | +--Aquisalimonas sp. 2447 (1) | | | | | | | | | | | +--Candidatus Macondimonas diazotrophica (1) | | | | | | | | | | | +--Ectothiorhodospira marina (1) | | | | | | | | | +--Chromatiaceae (4) | | | | | | | | | | | +--Candidatus Thiodictyon syntrophicum (1) | | | | | | | | | | | +--Thiospirillum jenense (1) | | | | | | | | | | | +--Caldichromatium japonicum (1) | | | | | | | | | | | +--Imhoffiella purpurea (1) | | | | | | | | | +--Sedimenticolaceae (1) | | | | | | | | | +--Candidatus Sedimenticola endophacoides (1) | | | | | | | +--Thiotrichales (4) | | | | | | | | | +--Thiotrichaceae (4) | | | | | | | | | +--Leucothrix pacifica (2) | | | | | | | | | +--Candidatus Thiothrix singaporensis (1) | | | | | | | | | +--Leucothrix arctica (1) | | | | | | | +--Oceanospirillales (6) | | | | | | | | | +--Halomonadaceae (2) | | | | | | | | | | | +--Pistricoccus aurantiacus (1) | | | | | | | | | | | +--Larsenimonas rhizosphaerae (1) | | | | | | | | | +--Oceanospirillaceae (2) | | | | | | | | | | | +--Oceanospirillum sediminis (1) | | | | | | | | | | | +--Marinospirillum celere (1) | | | | | | | | | +--Pleioneaceae (2) | | | | | | | | | +--Aliikangiella coralliicola (1) | | | | | | | | | +--Aliikangiella marina (1) | | | | | | | +--Arenicellales (1) | | | | | | | | | +--Arenicellaceae (1) | | | | | | | | | +--Arenicella chitinivorans (1) | | | | | | | +--Pseudomonadales (35) | | | | | | | +--Pseudomonadaceae (35) | | | | | | | +--Permianibacter aggregans (1) | | | | | | | +--Pseudomonas guangdongensis (1) | | | | | | | +--Entomomonas asaccharolytica (1) | | | | | | | +--Halopseudomonas salegens (1) | | | | | | | +--Pseudomonas mangrovi (1) | | | | | | | +--Pseudomonas oryzae (1) | | | | | | | +--Pseudomonas cavernae (1) | | | | | | | +--Pseudomonas kuykendallii (1) | | | | | | | +--Halopseudomonas phragmitis (1) | | | | | | | +--Pseudomonas matsuisoli (1) | | | | | | | +--Halopseudomonas laoshanensis (1) | | | | | | | +--Azotobactergroup (1) | | | | | | | | | +--Azotobacter (1) | | | | | | | | | +--Azotobacter chroococcum NCIMB 8003 (1) | | | | | | | +--Thiopseudomonas denitrificans (1) | | | | | | | +--Stutzerimonas nosocomialis (1) | | | | | | | +--Pseudomonas mangiferae (1) | | | | | | | +--Pseudomonas pharmacofabricae (1) | | | | | | | +--Halopseudomonas yangmingensis (1) | | | | | | | +--Pseudomonas (17) | | | | | | | | | +--Pseudomonas sp. URIL14HWK12:I9 (1) | | | | | | | | | +--Pseudomonas sp. OIL-1 (1) | | | | | | | | | +--Pseudomonas sp. ABC1 (1) | | | | | | | | | +--Pseudomonas sp. MRSN 12121 (1) | | | | | | | | | +--Pseudomonas sp. SSM44 (1) | | | | | | | | | +--Pseudomonas sp. Boi14 (1) | | | | | | | | | +--Pseudomonas sp. HAR-UPW-AIA-41 (1) | | | | | | | | | +--Pseudomonas sp. C27(2019) (1) | | | | | | | | | +--Pseudomonas sp. HLS-6 (1) | | | | | | | | | +--Pseudomonas sp. TAD18 (1) | | | | | | | | | +--Pseudomonas sp. GD03985 (1) | | | | | | | | | +--Pseudomonas sp. 1239 (1) | | | | | | | | | +--Pseudomonas sp. THAF187a (1) | | | | | | | | | +--Pseudomonas sp. v388 (1) | | | | | | | | | +--Pseudomonas sp. SDI (1) | | | | | | | | | +--Pseudomonas sp. 8AS (1) | | | | | | | | | +--Pseudomonas sp. GV071 (1) | | | | | | | +--Pseudomonas carbonaria (1) | | | | | +--Betaproteobacteria (406) | | | | | | | +--Betaproteobacteria bacterium SCN2 (1) | | | | | | | +--Burkholderiales (322) | | | | | | | | | +--Burkholderiales bacterium PBB4 (4) | | | | | | | | | +--Burkholderiales bacterium PBB1 (2) | | | | | | | | | +--Alcaligenaceae (22) | | | | | | | | | | | +--Pusillimonas (3) | | | | | | | | | | | | | +--Pusillimonas sp. ANT_WB101 (1) | | | | | | | | | | | | | +--Pusillimonas sp. DMV24BSW_D (1) | | | | | | | | | | | | | +--Pusillimonas sp. T2 (1) | | | | | | | | | | | +--Paracandidimonas soli (1) | | | | | | | | | | | +--Corticimicrobacter populi (1) | | | | | | | | | | | +--Verticiella sediminum (1) | | | | | | | | | | | +--Pigmentiphaga aceris (1) | | | | | | | | | | | +--Pollutimonas thiosulfatoxidans (1) | | | | | | | | | | | +--Parvibium lacunae (1) | | | | | | | | | | | +--Bordetella genomosp. 5 (1) | | | | | | | | | | | +--Pigmentiphaga humi (1) | | | | | | | | | | | +--Achromobacter kerstersii (1) | | | | | | | | | | | +--Orrella marina (1) | | | | | | | | | | | +--Pigmentiphaga (1) | | | | | | | | | | | | | +--Pigmentiphaga sp. NML030171 (1) | | | | | | | | | | | +--Bordetella genomosp. 7 (1) | | | | | | | | | | | +--Bordetella (1) | | | | | | | | | | | | | +--Bordetella sp. 02P26C-1 (1) | | | | | | | | | | | +--Candidimonas (1) | | | | | | | | | | | | | +--Candidimonas sp. SYP-B2681 (1) | | | | | | | | | | | +--Pollutimonas nitritireducens (1) | | | | | | | | | | | +--Pelistega ratti (1) | | | | | | | | | | | +--Alcaligenaceae bacterium 429 (1) | | | | | | | | | | | +--Derxia (1) | | | | | | | | | | | | | +--Derxia gummosa DSM 723 (1) | | | | | | | | | | | +--Achromobacter (1) | | | | | | | | | | | +--Achromobacter sp. AONIH1 (1) | | | | | | | | | +--Burkholderialesgeneraincertaesedis (16) | | | | | | | | | | | +--Xylophilus rhododendri (2) | | | | | | | | | | | +--Aquariibacter albus (2) | | | | | | | | | | | +--Rhizobacter (4) | | | | | | | | | | | | | +--Rhizobacter sp. AJA081-3 (2) | | | | | | | | | | | | | +--Rhizobacter sp. (2) | | | | | | | | | | | +--Tepidimonas charontis (1) | | | | | | | | | | | +--Aquabacterium (1) | | | | | | | | | | | | | +--Aquabacterium sp. (1) | | | | | | | | | | | +--Thiomonas (1) | | | | | | | | | | | | | +--Thiomonas sp. X19 (1) | | | | | | | | | | | +--Tepidimonas alkaliphilus (1) | | | | | | | | | | | +--Saezia sanguinis (1) | | | | | | | | | | | +--Aquabacterium olei (1) | | | | | | | | | | | +--Aquabacterium lacunae (1) | | | | | | | | | | | +--Aquabacterium soli (1) | | | | | | | | | +--Burkholderiales bacterium (1) | | | | | | | | | +--Burkholderiales bacterium PBB5 (1) | | | | | | | | | +--Burkholderiales bacterium PBB6 (2) | | | | | | | | | +--Oxalobacteraceae (46) | | | | | | | | | | | +--Undibacterium luofuense (1) | | | | | | | | | | | +--Noviherbaspirillum pedocola (1) | | | | | | | | | | | +--Telluriagroup (19) | | | | | | | | | | | | | +--Massilia violaceinigra (1) | | | | | | | | | | | | | +--Pseudoduganella armeniaca (1) | | | | | | | | | | | | | +--Massilia arenosa (1) | | | | | | | | | | | | | +--Massilia (3) | | | | | | | | | | | | | | | +--Massilia sp. Dwa41.01b (1) | | | | | | | | | | | | | | | +--Massilia sp. (1) | | | | | | | | | | | | | | | +--Massilia sp. Root335 (1) | | | | | | | | | | | | | +--Rugamonas rivuli (1) | | | | | | | | | | | | | +--Rugamonas brunnea (1) | | | | | | | | | | | | | +--Massilia eurypsychrophila (1) | | | | | | | | | | | | | +--Massilia horti (1) | | | | | | | | | | | | | +--Massilia glaciei (1) | | | | | | | | | | | | | +--Pseudoduganella ginsengisoli (1) | | | | | | | | | | | | | +--Massilia cavernae (1) | | | | | | | | | | | | | +--Massilia polaris (1) | | | | | | | | | | | | | +--Massilia forsythiae (1) | | | | | | | | | | | | | +--Duganella fentianensis (1) | | | | | | | | | | | | | +--Massilia psychrophila (1) | | | | | | | | | | | | | +--Duganella (2) | | | | | | | | | | | | | +--Duganella sp. CF517 (1) | | | | | | | | | | | | | +--Duganella sp. 1224 (1) | | | | | | | | | | | +--Noviherbaspirillum cavernae (1) | | | | | | | | | | | +--Noviherbaspirillum sedimenti (1) | | | | | | | | | | | +--Sapientia aquatica (1) | | | | | | | | | | | +--Glaciimonas (2) | | | | | | | | | | | | | +--Glaciimonas sp. PCH181 (1) | | | | | | | | | | | | | +--Glaciimonas sp. (1) | | | | | | | | | | | +--Undibacterium piscinae (1) | | | | | | | | | | | +--Noviherbaspirillum denitrificans (1) | | | | | | | | | | | +--Noviherbaspirillum humi (1) | | | | | | | | | | | +--Janthinobacterium (1) | | | | | | | | | | | | | +--Janthinobacterium sp. 17J80-10 (1) | | | | | | | | | | | +--Oxalobacteraceae bacterium CAVE-383 (1) | | | | | | | | | | | +--Solimicrobium silvestre (1) | | | | | | | | | | | +--Noviherbaspirillum galbum (1) | | | | | | | | | | | +--Undibacterium rugosum (1) | | | | | | | | | | | +--Undibacterium nitidum (1) | | | | | | | | | | | +--Herbaspirillum (3) | | | | | | | | | | | | | +--Herbaspirillum sp. SJZ107 (1) | | | | | | | | | | | | | +--Herbaspirillum sp. Sphag64 (1) | | | | | | | | | | | | | +--Herbaspirillum sp. meg3 (1) | | | | | | | | | | | +--Noviherbaspirillum saxi (1) | | | | | | | | | | | +--Glaciimonas soli (1) | | | | | | | | | | | +--Undibacterium terreum (1) | | | | | | | | | | | +--Herminiimonas (1) | | | | | | | | | | | | | +--Herminiimonas sp. (1) | | | | | | | | | | | +--Undibacterium jejuense (1) | | | | | | | | | | | +--Undibacterium (1) | | | | | | | | | | | | | +--Undibacterium sp. KW1 (1) | | | | | | | | | | | +--Undibacterium fentianense (1) | | | | | | | | | | | +--Oxalobacteraceae bacterium OM1 (1) | | | | | | | | | +--Sphaerotilaceae (33) | | | | | | | | | | | +--Schlegelella koreensis (2) | | | | | | | | | | | +--Inhella crocodyli (1) | | | | | | | | | | | +--Rubrivivax albus (2) | | | | | | | | | | | +--Ideonella livida (2) | | | | | | | | | | | +--Ideonella (2) | | | | | | | | | | | | | +--Ideonella sp. MAG2 (2) | | | | | | | | | | | +--Roseateles (10) | | | | | | | | | | | | | +--Mitsuaria sp. PDC51 (2) | | | | | | | | | | | | | +--Roseateles sp. DAIF2 (2) | | | | | | | | | | | | | +--Paucibacter sp. KBW04 (2) | | | | | | | | | | | | | +--Mitsuaria sp. WAJ17 (2) | | | | | | | | | | | | | +--Pelomonas sp. HMWF004 (2) | | | | | | | | | | | +--Caldimonas caldifontis (2) | | | | | | | | | | | +--Inhella proteolytica (1) | | | | | | | | | | | +--Ideonella aquatica (2) | | | | | | | | | | | +--Inhella gelatinilytica (1) | | | | | | | | | | | +--Piscinibacter (2) | | | | | | | | | | | | | +--Piscinibacter sp. HJYY11 (2) | | | | | | | | | | | +--Rubrivivax pictus (2) | | | | | | | | | | | +--Rubrivivax (2) | | | | | | | | | | | | | +--Rubrivivax sp. A210 (2) | | | | | | | | | | | +--Scleromatobacter humisilvae (1) | | | | | | | | | | | +--Azohydromonas caseinilytica (1) | | | | | | | | | +--Burkholderiales bacterium PBB3 (3) | | | | | | | | | +--Burkholderiales bacterium LSUCC0115 (1) | | | | | | | | | +--Burkholderiaceae (42) | | | | | | | | | | | +--Paraburkholderia lacunae (1) | | | | | | | | | | | +--Candidatus Vallotia tarda (1) | | | | | | | | | | | +--Paraburkholderia dinghuensis (1) | | | | | | | | | | | +--Caballeronia novacaledonica (1) | | | | | | | | | | | +--Mycoavidus cysteinexigens (1) | | | | | | | | | | | +--Trinickia fusca (1) | | | | | | | | | | | +--Cupriavidus agavae (1) | | | | | | | | | | | +--Burkholderiaceae bacterium (2) | | | | | | | | | | | +--Paraburkholderia steynii (1) | | | | | | | | | | | +--Polynucleobacter antarcticus (1) | | | | | | | | | | | +--Paraburkholderia tagetis (1) | | | | | | | | | | | +--Paraburkholderia acidiphila (1) | | | | | | | | | | | +--Chitinasiproducens palmae (1) | | | | | | | | | | | +--Trinickia terrae (1) | | | | | | | | | | | +--Trinickia dinghuensis (1) | | | | | | | | | | | +--Polynucleobacter victoriensis (1) | | | | | | | | | | | +--Ephemeroptericola cinctiostellae (1) | | | | | | | | | | | +--Paraburkholderia panacisoli (1) | | | | | | | | | | | +--Quisquiliibacterium transsilvanicum (1) | | | | | | | | | | | +--Pandoraea terrae (1) | | | | | | | | | | | +--Paraburkholderia caffeinitolerans (1) | | | | | | | | | | | +--Paraburkholderia eburnea (1) | | | | | | | | | | | +--Zeimonas arvi (1) | | | | | | | | | | | +--Paraburkholderia acidisoli (1) | | | | | | | | | | | +--Hydromonas duriensis (1) | | | | | | | | | | | +--Formosimonas limnophila (1) | | | | | | | | | | | +--Burkholderia (1) | | | | | | | | | | | | | +--Burkholderia sp. WAC0059 (1) | | | | | | | | | | | +--Paraburkholderia monticola (1) | | | | | | | | | | | +--Cupriavidus (2) | | | | | | | | | | | | | +--Cupriavidus sp. YR651 (1) | | | | | | | | | | | | | +--Cupriavidus gilardii J11 (1) | | | | | | | | | | | +--Paraburkholderia ultramafica (1) | | | | | | | | | | | +--Paraburkholderia (4) | | | | | | | | | | | | | +--Paraburkholderia sp. LEh10 (1) | | | | | | | | | | | | | +--Paraburkholderia sp. BL23I1N1 (1) | | | | | | | | | | | | | +--Paraburkholderia sp. BL10I2N1 (1) | | | | | | | | | | | | | +--Paraburkholderia sp. DHOC27 (1) | | | | | | | | | | | +--Caballeronia (1) | | | | | | | | | | | | | +--Caballeronia sp. SBC1 (1) | | | | | | | | | | | +--Paraburkholderia fynbosensis (1) | | | | | | | | | | | +--Paraburkholderia saeva (1) | | | | | | | | | | | +--Cupriavidus yeoncheonensis (1) | | | | | | | | | | | +--Pararobbsia silviterrae (1) | | | | | | | | | | | +--Caballeronia concitans (1) | | | | | | | | | +--Sutterellaceae (2) | | | | | | | | | | | +--Sutterella (1) | | | | | | | | | | | | | +--Sutterella sp. AM11-39 (1) | | | | | | | | | | | +--Sutterella megalosphaeroides (1) | | | | | | | | | +--Comamonadaceae (147) | | | | | | | | | +--Comamonas flocculans (2) | | | | | | | | | +--Oryzisolibacter propanilivorax (2) | | | | | | | | | +--Limnohabitans (4) | | | | | | | | | | | +--Limnohabitans sp. JirII-31 (2) | | | | | | | | | | | +--Limnohabitans sp. Jir61 (2) | | | | | | | | | +--Ramlibacter aurantiacus (2) | | | | | | | | | +--Variovorax (15) | | | | | | | | | | | +--Variovorax sp. PDC80 (2) | | | | | | | | | | | +--Variovorax sp. CF079 (2) | | | | | | | | | | | +--Variovorax sp. (3) | | | | | | | | | | | +--Variovorax sp. OV329 (2) | | | | | | | | | | | +--Variovorax sp. Sphag1AA (2) | | | | | | | | | | | +--Variovorax sp. PAMC28562 (2) | | | | | | | | | | | +--Variovorax sp. MHTC-1 (2) | | | | | | | | | +--Paenacidovorax monticola (2) | | | | | | | | | +--Hydrogenophaga crocea (2) | | | | | | | | | +--Variovorax terrae (2) | | | | | | | | | +--Ramlibacter (4) | | | | | | | | | | | +--Ramlibacter sp. WS9 (2) | | | | | | | | | | | +--Ramlibacter sp. (2) | | | | | | | | | +--Comamonadaceae bacterium G21597-S1 (2) | | | | | | | | | +--Simplicispira hankyongi (2) | | | | | | | | | +--Brachymonas (1) | | | | | | | | | | | +--Brachymonas denitrificans DSM 15123 (1) | | | | | | | | | +--Ramlibacter lithotrophicus (2) | | | | | | | | | +--Ramlibacter humi (2) | | | | | | | | | +--Ottowia testudinis (2) | | | | | | | | | +--Ramlibacter rhizophilus (2) | | | | | | | | | +--Lampropedia puyangensis (1) | | | | | | | | | +--Comamonas suwonensis (2) | | | | | | | | | +--Ottowia beijingensis (1) | | | | | | | | | +--Diaphorobacter (2) | | | | | | | | | | | +--Diaphorobacter sp. HDW4B (2) | | | | | | | | | +--Acidovorax (3) | | | | | | | | | | | +--Acidovorax sp. (1) | | | | | | | | | | | +--Acidovorax sp. HDW3 (2) | | | | | | | | | +--Caenimonas aquaedulcis (2) | | | | | | | | | +--Corticibacter populi (1) | | | | | | | | | +--Ramlibacter agri (2) | | | | | | | | | +--Comamonas (5) | | | | | | | | | | | +--Comamonas sp. 26 (2) | | | | | | | | | | | +--Comamonas sp. BIGb0124 (1) | | | | | | | | | | | +--Comamonas sp. JNW (2) | | | | | | | | | +--Limnohabitans radicicola (2) | | | | | | | | | +--Ramlibacter albus (2) | | | | | | | | | +--Ottowia oryzae (2) | | | | | | | | | +--Hydrogenophaga (9) | | | | | | | | | | | +--Hydrogenophaga taeniospiralis CCUG 15921 (2) | | | | | | | | | | | +--Hydrogenophaga sp. IBVHS2 (2) | | | | | | | | | | | +--Hydrogenophaga sp. (1) | | | | | | | | | | | +--Hydrogenophaga sp. RAC07 (2) | | | | | | | | | | | +--Hydrogenophaga sp. BPS33 (2) | | | | | | | | | +--Ramlibacter pinisoli (2) | | | | | | | | | +--Polaromonas (9) | | | | | | | | | | | +--Polaromonas sp. (3) | | | | | | | | | | | +--Polaromonas sp. Pch-P (2) | | | | | | | | | | | +--Polaromonas sp. OV174 (2) | | | | | | | | | | | +--Polaromonas sp. A23 (2) | | | | | | | | | +--Ottowia (2) | | | | | | | | | | | +--Ottowia sp. GY511 (2) | | | | | | | | | +--Vandammella animalimorsus (1) | | | | | | | | | +--Ramlibacter monticola (2) | | | | | | | | | +--Ramlibacter montanisoli (2) | | | | | | | | | +--Pulveribacter suum (2) | | | | | | | | | +--Simplicispira (2) | | | | | | | | | | | +--Simplicispira sp. 125 (2) | | | | | | | | | +--Variovorax gossypii (1) | | | | | | | | | +--Lampropedia aestuarii (1) | | | | | | | | | +--Curvibacter (2) | | | | | | | | | | | +--Curvibacter sp. AEP1-3 (2) | | | | | | | | | +--Tibeticola sediminis (2) | | | | | | | | | +--Rhodoferax sediminis (2) | | | | | | | | | +--Hydrogenophaga aromaticivorans (2) | | | | | | | | | +--Comamonadaceae bacterium (2) | | | | | | | | | +--Polaromonas eurypsychrophila (2) | | | | | | | | | +--Diaphorobacter ruginosibacter (2) | | | | | | | | | +--Hydrogenophaga borbori (2) | | | | | | | | | +--Melaminivora alkalimesophila (2) | | | | | | | | | +--Rhodoferax lacus (2) | | | | | | | | | +--Ramlibacter cellulosilyticus (2) | | | | | | | | | +--Caenimonas sedimenti (2) | | | | | | | | | +--Diaphorobacter aerolatus (2) | | | | | | | | | +--Comamonas antarctica (2) | | | | | | | | | +--Caenimonas (2) | | | | | | | | | | | +--Caenimonas koreensis DSM 17982 (2) | | | | | | | | | +--Rhodoferax (7) | | | | | | | | | | | +--Rhodoferax sp. OV413 (2) | | | | | | | | | | | +--Rhodoferax sp. TH121 (2) | | | | | | | | | | | +--Rhodoferax sp. AJA081-3 (3) | | | | | | | | | +--Albitalea terrae (2) | | | | | | | | | +--Ramlibacter algicola (2) | | | | | | | +--Rhodocyclales (40) | | | | | | | | | +--Fluviibacteraceae (1) | | | | | | | | | | | +--Fluviibacter phosphoraccumulans (1) | | | | | | | | | +--Rhodocyclaceae (8) | | | | | | | | | | | +--Rhodocyclaceae bacterium (2) | | | | | | | | | | | +--Niveibacterium umoris (1) | | | | | | | | | | | +--Azospira (2) | | | | | | | | | | | | | +--Azospira sp. I13 (2) | | | | | | | | | | | +--Oryzomicrobium terrae (1) | | | | | | | | | | | +--Azospira inquinata (2) | | | | | | | | | +--Azonexaceae (6) | | | | | | | | | | | +--Dechloromonas (6) | | | | | | | | | | | +--Dechloromonas sp. HYN0024 (2) | | | | | | | | | | | +--Dechloromonas sp. TW-R-39-2 (2) | | | | | | | | | | | +--Dechloromonas sp. (2) | | | | | | | | | +--Zoogloeaceae (25) | | | | | | | | | +--Uliginosibacterium (2) | | | | | | | | | | | +--Uliginosibacterium sp. TH139 (2) | | | | | | | | | +--Pseudothauera nasutitermitis (2) | | | | | | | | | +--Thauera (3) | | | | | | | | | | | +--Thauera aromatica K172 (1) | | | | | | | | | | | +--Thauera sp. K11 (2) | | | | | | | | | +--Pseudothauera lacus (2) | | | | | | | | | +--Pseudazoarcus pumilus (2) | | | | | | | | | +--Pseudothauera rhizosphaerae (2) | | | | | | | | | +--Zoogloea dura (2) | | | | | | | | | +--Denitromonas iodatirespirans (2) | | | | | | | | | +--Parazoarcus (2) | | | | | | | | | | | +--Parazoarcus communis SWub3 = DSM 12120 (2) | | | | | | | | | +--Thauera propionica (2) | | | | | | | | | +--Nitrogeniibacter mangrovi (2) | | | | | | | | | +--Zoogloea oleivorans (2) | | | | | | | +--Betaproteobacteria bacterium SCN1 (1) | | | | | | | +--Neisseriales (13) | | | | | | | | | +--Leeiaceae (1) | | | | | | | | | | | +--Leeia aquatica (1) | | | | | | | | | +--Chromobacteriaceae (4) | | | | | | | | | | | +--Paludibacterium purpuratum (1) | | | | | | | | | | | +--Paludibacterium paludis (1) | | | | | | | | | | | +--Aquitalea (1) | | | | | | | | | | | | | +--Aquitalea sp. FJL05 (1) | | | | | | | | | | | +--Paludibacterium denitrificans (1) | | | | | | | | | +--Neisseriaceae (2) | | | | | | | | | | | +--Crenobacter intestini (1) | | | | | | | | | | | +--Craterilacuibacter sinensis (1) | | | | | | | | | +--Chitinibacteraceae (6) | | | | | | | | | +--Chitinibacter fontanus (1) | | | | | | | | | +--Chitinimonas (1) | | | | | | | | | | | +--Chitinimonas sp. BJB300 (1) | | | | | | | | | +--Iodobacter ciconiae (1) | | | | | | | | | +--Chitinimonas arctica (1) | | | | | | | | | +--Chitinilyticum piscinae (1) | | | | | | | | | +--Chitiniphilus eburneus (1) | | | | | | | +--Betaproteobacteria bacterium (1) | | | | | | | +--Nitrosomonadales (28) | | | | | | | +--Gallionellaceae (3) | | | | | | | | | +--Sideroxydans (1) | | | | | | | | | | | +--Sideroxydans sp. CL21 (1) | | | | | | | | | +--Nitrotoga (1) | | | | | | | | | | | +--Candidatus Nitrotoga sp. AM1P (1) | | | | | | | | | +--Candidatus Nitrotoga fabula (1) | | | | | | | +--Sterolibacteriaceae (5) | | | | | | | | | +--Sulfuritalea (1) | | | | | | | | | | | +--Sulfuritalea sp. (1) | | | | | | | | | +--Denitratisoma (3) | | | | | | | | | | | +--Denitratisoma sp. DHT3 (3) | | | | | | | | | +--Sulfurisoma sediminicola (1) | | | | | | | +--Methylophilaceae (6) | | | | | | | | | +--Methyloradius palustris (1) | | | | | | | | | +--Pseudomethylobacillus aquaticus (1) | | | | | | | | | +--Methylophilus medardicus (1) | | | | | | | | | +--Methylophilaceae bacterium (1) | | | | | | | | | +--Novimethylophilus kurashikiensis (1) | | | | | | | | | +--Methylotenera (1) | | | | | | | | | +--Methylotenera sp. (1) | | | | | | | +--Nitrosomonadaceae (3) | | | | | | | | | +--Nitrosospira lacus (1) | | | | | | | | | +--Nitrosomonas (1) | | | | | | | | | | | +--Nitrosomonas sp. Nm166 (1) | | | | | | | | | +--Nitrosospira (1) | | | | | | | | | +--Nitrosospira sp. Nsp14 (1) | | | | | | | +--Thiobacillaceae (2) | | | | | | | | | +--Sulfuritortus calidifontis (1) | | | | | | | | | +--Parasulfuritortus cantonensis (1) | | | | | | | +--Usitatibacteraceae (2) | | | | | | | | | +--Usitatibacter palustris (1) | | | | | | | | | +--Usitatibacter rugosus (1) | | | | | | | +--unclassifiedNitrosomonadales (1) | | | | | | | | | +--Methylophilales bacterium MBRS-H7 (1) | | | | | | | +--Sulfuricellaceae (6) | | | | | | | +--Sulfuricella (1) | | | | | | | | | +--Sulfuricella sp. (1) | | | | | | | +--Sulfurimicrobium lacus (1) | | | | | | | +--Sulfuriferula nivalis (1) | | | | | | | +--Sulfuriferula (2) | | | | | | | | | +--Sulfuriferula sp. AH1 (2) | | | | | | | +--Sulfurirhabdus autotrophica (1) | | | | | +--Hydrogenophilia (2) | | | | | | | +--Hydrogenophilaliaincertaesedis (2) | | | | | | | +--Pelomicrobium methylotrophicum (2) | | | | | +--Zetaproteobacteria (3) | | | | | +--Mariprofundales (3) | | | | | +--Mariprofundaceae (3) | | | | | +--Mariprofundus ferrinatatus (1) | | | | | +--Mariprofundus erugo (1) | | | | | +--Mariprofundus (1) | | | | | +--Mariprofundus sp. EBB-1 (1) | | | +--Acidobacteriota (1) | | | | | +--Holophagae (1) | | | | | +--Holophagales (1) | | | | | +--Holophagaceae (1) | | | | | +--Geothrix (1) | | | | | +--Geothrix sp. (1) | | | +--Terrabacteriagroup (57) | | | | | +--Actinobacteria (8) | | | | | | | +--Actinobacteria (8) | | | | | | | +--Propionibacteriales (1) | | | | | | | | | +--Nocardioidaceae (1) | | | | | | | | | +--Nocardioides sp. Root79 (1) | | | | | | | +--Micromonosporales (2) | | | | | | | | | +--Micromonosporaceae (2) | | | | | | | | | +--Actinoplanes (2) | | | | | | | | | +--Actinoplanes friuliensis DSM 7358 (1) | | | | | | | | | +--Actinoplanes missouriensis 431 (1) | | | | | | | +--Pseudonocardiales (5) | | | | | | | +--Pseudonocardiaceae (5) | | | | | | | +--Amycolatopsis (2) | | | | | | | | | +--Amycolatopsis methanolica 239 (2) | | | | | | | +--Actinophytocola xanthii (1) | | | | | | | +--Kutzneria (2) | | | | | | | +--Kutzneria albida DSM 43870 (2) | | | | | +--Actinomycetota (48) | | | | | | | +--Acidimicrobiia (1) | | | | | | | | | +--Acidimicrobiia bacterium (1) | | | | | | | +--Actinomycetes (47) | | | | | | | +--Propionibacteriales (4) | | | | | | | | | +--Nocardioidaceae (2) | | | | | | | | | | | +--Nocardioides humilatus (1) | | | | | | | | | | | +--Nocardioides silvaticus (1) | | | | | | | | | +--Kribbellaceae (2) | | | | | | | | | +--Kribbella turkmenica (1) | | | | | | | | | +--Kribbella (1) | | | | | | | | | +--Kribbella sp. VKM Ac-2527 (1) | | | | | | | +--Micromonosporales (12) | | | | | | | | | +--Micromonosporaceae (12) | | | | | | | | | +--Dactylosporangium sucinum (1) | | | | | | | | | +--Plantactinospora soyae (1) | | | | | | | | | +--Catellatospora (2) | | | | | | | | | | | +--Catellatospora sp. IY07-71 (1) | | | | | | | | | | | +--Catellatospora sp. TT07R-123 (1) | | | | | | | | | +--Plantactinospora (1) | | | | | | | | | | | +--Plantactinospora sp. BB1 (1) | | | | | | | | | +--Actinoplanes (2) | | | | | | | | | | | +--Actinoplanes sp. ATCC 53533 (1) | | | | | | | | | | | +--Actinoplanes sp. TBRC 11911 (1) | | | | | | | | | +--Rhizocola hellebori (1) | | | | | | | | | +--Micromonospora (1) | | | | | | | | | | | +--Micromonospora sp. HM5-17 (1) | | | | | | | | | +--Actinoplanes aureus (1) | | | | | | | | | +--Natronosporangium hydrolyticum (1) | | | | | | | | | +--Micromonosporaceae bacterium (1) | | | | | | | +--Kitasatosporales (3) | | | | | | | | | +--Streptomycetaceae (3) | | | | | | | | | +--Actinacidiphila oryziradicis (1) | | | | | | | | | +--Yinghuangia soli (1) | | | | | | | | | +--Streptomyces (1) | | | | | | | | | +--Streptomyces sp. SID3343 (1) | | | | | | | +--Pseudonocardiales (21) | | | | | | | | | +--Pseudonocardiaceae (21) | | | | | | | | | +--Actinophytocola (1) | | | | | | | | | | | +--Actinophytocola sp. (1) | | | | | | | | | +--Pseudonocardia sediminis (1) | | | | | | | | | +--Amycolatopsis suaedae (1) | | | | | | | | | +--Amycolatopsis alkalitolerans (1) | | | | | | | | | +--Amycolatopsis acidicola (1) | | | | | | | | | +--Lentzea tibetensis (1) | | | | | | | | | +--Actinophytocola algeriensis (1) | | | | | | | | | +--Amycolatopsis (7) | | | | | | | | | | | +--Amycolatopsis sp. SID8362 (2) | | | | | | | | | | | +--Amycolatopsis sp. YIM 10 (1) | | | | | | | | | | | +--Amycolatopsis sp. CA-230715 (2) | | | | | | | | | | | +--Amycolatopsis sp. FDAARGOS 1241 (1) | | | | | | | | | | | +--Amycolatopsis sp. M39 (1) | | | | | | | | | +--Solihabitans fulvus (2) | | | | | | | | | +--Pseudonocardia (1) | | | | | | | | | | | +--Pseudonocardia sp. MH-G8 (1) | | | | | | | | | +--Pseudonocardiaceae bacterium YIM PH 21723 (1) | | | | | | | | | +--Saccharothrix (1) | | | | | | | | | | | +--Saccharothrix sp. CB00851 (1) | | | | | | | | | +--Actinocrispum wychmicini (2) | | | | | | | +--Frankiales (1) | | | | | | | | | +--Frankiaceae (1) | | | | | | | | | +--Parafrankia soli (1) | | | | | | | +--Streptosporangiales (6) | | | | | | | +--Thermomonosporaceae (5) | | | | | | | | | +--Actinomadura (1) | | | | | | | | | | | +--Actinomadura sp. WAC 06369 (1) | | | | | | | | | +--Actinoallomurus bryophytorum (1) | | | | | | | | | +--Actinomadura darangshiensis (1) | | | | | | | | | +--Actinomadura soli (1) | | | | | | | | | +--Actinomadura litoris (1) | | | | | | | +--Streptosporangiaceae (1) | | | | | | | +--Streptosporangium saharense (1) | | | | | +--Armatimonadota (1) | | | | | +--Fimbriimonadia (1) | | | | | +--Fimbriimonadales (1) | | | | | +--Fimbriimonadaceae (1) | | | | | +--Fimbriimonadaceae bacterium (1) | | | +--PVCgroup (11) | | | +--Planctomycetota (6) | | | | | +--Planctomycetia (6) | | | | | +--Gemmatales (5) | | | | | | | +--Gemmataceae (5) | | | | | | | +--Telmatocola sphagniphila (1) | | | | | | | +--Limnoglobus roseus (1) | | | | | | | +--Gemmataceae bacterium (1) | | | | | | | +--Frigoriglobus tundricola (1) | | | | | | | +--Urbifossiella limnaea (1) | | | | | +--Planctomycetales (1) | | | | | +--Planctomycetaceae (1) | | | | | +--Planctomycetaceae bacterium (1) | | | +--Planctomycetes (5) | | | +--Planctomycetia (5) | | | +--Planctomycetales (5) | | | +--Gemmataceae (2) | | | | | +--Fimbriiglobus ruber (1) | | | | | +--Gemmata sp. SH-PL17 (1) | | | +--Isosphaeraceae (2) | | | | | +--Singulisphaera (1) | | | | | | | +--Singulisphaera acidiphila DSM 18658 (1) | | | | | +--Paludisphaera borealis (1) | | | +--Planctomycetaceae (1) | | | +--Planctomyces sp. SH-PL62 (1) | +--thiotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev) (1)