# Species tree for RF00106 # Generated from Rfam version 15.00 | +--Eukaryota (55) | | | +--Sar (2) | | | | | +--Stramenopiles (2) | | | | | +--Ochrophyta (2) | | | | | +--Bacillariophyta (1) | | | | | | | +--Bacillariophyceae (1) | | | | | | | +--Bacillariophycidae (1) | | | | | | | +--Naviculales (1) | | | | | | | +--Naviculaceae (1) | | | | | | | +--Seminavis robusta (1) | | | | | +--Bolidophyceae (1) | | | | | +--Parmales (1) | | | | | +--Triparmaceae (1) | | | | | +--Triparma columacea (1) | | | +--Alveolata (3) | | | | | +--Apicomplexa (3) | | | | | +--Aconoidasida (3) | | | | | +--Piroplasmida (3) | | | | | +--Babesiidae (3) | | | | | +--Babesia bigemina (3) | | | +--stramenopiles (1) | | | | | +--Oomycetes (1) | | | | | +--Saprolegniales (1) | | | | | +--Saprolegniaceae (1) | | | | | +--Thraustotheca clavata (1) | | | +--Metazoa (40) | | | | | +--Nematoda (12) | | | | | | | +--Chromadorea (12) | | | | | | | +--Spirurida (3) | | | | | | | | | +--Filarioidea (3) | | | | | | | | | +--Onchocercidae (3) | | | | | | | | | +--Wuchereria bancrofti (2) | | | | | | | | | +--Brugia timori (1) | | | | | | | +--Rhabditida (9) | | | | | | | +--Strongylida (1) | | | | | | | | | +--Ancylostomatoidea (1) | | | | | | | | | +--Ancylostomatidae (1) | | | | | | | | | +--Ancylostomatinae (1) | | | | | | | | | +--Ancylostoma duodenale (1) | | | | | | | +--Rhabditoidea (8) | | | | | | | +--Rhabditidae (8) | | | | | | | +--Peloderinae (8) | | | | | | | +--Caenorhabditis remanei (8) | | | | | +--Chordata (7) | | | | | | | +--Craniata (7) | | | | | | | +--Vertebrata (7) | | | | | | | +--Euteleostomi (7) | | | | | | | +--Actinopterygii (3) | | | | | | | | | +--Neopterygii (3) | | | | | | | | | +--Teleostei (3) | | | | | | | | | +--Euteleostei (3) | | | | | | | | | +--Protacanthopterygii (3) | | | | | | | | | +--Salmoniformes (3) | | | | | | | | | +--Salmonidae (3) | | | | | | | | | +--Salmoninae (3) | | | | | | | | | +--Salmo salar (Atlantic salmon) (3) | | | | | | | +--Mammalia (3) | | | | | | | | | +--Eutheria (3) | | | | | | | | | +--Euarchontoglires (2) | | | | | | | | | | | +--Primates (1) | | | | | | | | | | | | | +--Haplorrhini (1) | | | | | | | | | | | | | +--Catarrhini (1) | | | | | | | | | | | | | +--Hominidae (1) | | | | | | | | | | | | | +--Gorilla gorilla gorilla (western lowland gorilla) (1) | | | | | | | | | | | +--Glires (1) | | | | | | | | | | | +--Rodentia (1) | | | | | | | | | | | +--Hystricognathi (1) | | | | | | | | | | | +--Bathyergidae (1) | | | | | | | | | | | +--Heterocephalus glaber (naked mole-rat) (1) | | | | | | | | | +--Laurasiatheria (1) | | | | | | | | | +--Carnivora (1) | | | | | | | | | +--Caniformia (1) | | | | | | | | | +--Mustelidae (1) | | | | | | | | | +--Mustelinae (1) | | | | | | | | | +--Neovison vison (1) | | | | | | | +--Archosauria (1) | | | | | | | +--Dinosauria (1) | | | | | | | +--Saurischia (1) | | | | | | | +--Theropoda (1) | | | | | | | +--Coelurosauria (1) | | | | | | | +--Aves (1) | | | | | | | +--Neognathae (1) | | | | | | | +--Galliformes (1) | | | | | | | +--Phasianidae (1) | | | | | | | +--Phasianinae (1) | | | | | | | +--Pavo cristatus (Indian peafowl) (1) | | | | | +--Arthropoda (18) | | | | | | | +--Hexapoda (11) | | | | | | | | | +--Insecta (11) | | | | | | | | | +--Pterygota (11) | | | | | | | | | +--Neoptera (11) | | | | | | | | | +--Endopterygota (11) | | | | | | | | | +--Lepidoptera (11) | | | | | | | | | +--Glossata (11) | | | | | | | | | +--Ditrysia (11) | | | | | | | | | +--Papilionoidea (1) | | | | | | | | | | | +--Pieridae (1) | | | | | | | | | | | +--Dismorphiinae (1) | | | | | | | | | | | +--Leptidea sinapis (1) | | | | | | | | | +--Bombycoidea (6) | | | | | | | | | | | +--Bombycidae (6) | | | | | | | | | | | +--Bombycinae (6) | | | | | | | | | | | +--Bombyx mori (domestic silkworm) (6) | | | | | | | | | +--Yponomeutoidea (4) | | | | | | | | | +--Plutellidae (4) | | | | | | | | | +--Plutella xylostella (diamondback moth) (4) | | | | | | | +--Chelicerata (7) | | | | | | | +--Arachnida (7) | | | | | | | +--Acari (7) | | | | | | | +--Parasitiformes (6) | | | | | | | | | +--Ixodida (6) | | | | | | | | | +--Ixodoidea (6) | | | | | | | | | +--Ixodidae (6) | | | | | | | | | +--Ixodinae (6) | | | | | | | | | +--Ixodes scapularis (black-legged tick) (6) | | | | | | | +--Acariformes (1) | | | | | | | +--Sarcoptiformes (1) | | | | | | | +--Oribatida (1) | | | | | | | +--Brachypylina (1) | | | | | | | +--Oppioidea (1) | | | | | | | +--Oppiidae (1) | | | | | | | +--Oppiella nova (1) | | | | | +--Platyhelminthes (3) | | | | | +--Monogenea (1) | | | | | | | +--Polyopisthocotylea (1) | | | | | | | +--Polystomatidae (1) | | | | | | | +--Protopolystoma xenopodis (1) | | | | | +--Trematoda (2) | | | | | +--Digenea (2) | | | | | +--Opisthorchiida (2) | | | | | +--Opisthorchiata (2) | | | | | +--Opisthorchiidae (2) | | | | | +--Clonorchis sinensis (2) | | | +--Amoebozoa (1) | | | | | +--Mycetozoa (1) | | | | | +--Dictyosteliida (1) | | | | | +--Dictyostelium lacteum (1) | | | +--Fungi (4) | | | | | +--Dikarya (3) | | | | | | | +--Ascomycota (1) | | | | | | | | | +--Pezizomycotina (1) | | | | | | | | | +--Sordariomycetes (1) | | | | | | | | | +--Hypocreomycetidae (1) | | | | | | | | | +--Glomerellales (1) | | | | | | | | | +--Glomerellaceae (1) | | | | | | | | | +--mitosporicGlomerellaceae (1) | | | | | | | | | +--Colletotrichum higginsianum (1) | | | | | | | +--Basidiomycota (2) | | | | | | | +--Agaricomycotina (2) | | | | | | | +--Agaricomycetes (2) | | | | | | | +--Russulales (2) | | | | | | | +--Bondarzewiaceae (1) | | | | | | | | | +--Bondarzewia mesenterica (1) | | | | | | | +--Peniophoraceae (1) | | | | | | | +--Peniophora sp. CBMAI 1063 (1) | | | | | +--Fungiincertaesedis (1) | | | | | +--Basalfungallineages (1) | | | | | +--Mucoromycotina (1) | | | | | +--Mucorales (1) | | | | | +--Mucoraceae (1) | | | | | +--Parasitella parasitica (1) | | | +--Viridiplantae (2) | | | | | +--Streptophyta (2) | | | | | +--Embryophyta (1) | | | | | | | +--Tracheophyta (1) | | | | | | | +--Spermatophyta (1) | | | | | | | +--Magnoliophyta (1) | | | | | | | +--Liliopsida (1) | | | | | | | +--Zingiberales (1) | | | | | | | +--Musaceae (1) | | | | | | | +--Musa acuminata subsp. malaccensis (1) | | | | | +--Charophyceae (1) | | | | | +--Charales (1) | | | | | +--Characeae (1) | | | | | +--Chara braunii (1) | | | +--Opisthokonta (2) | | | +--Metazoa (1) | | | | | +--Eumetazoa (1) | | | | | +--Bilateria (1) | | | | | +--Protostomia (1) | | | | | +--Ecdysozoa (1) | | | | | +--Panarthropoda (1) | | | | | +--Arthropoda (1) | | | | | +--Chelicerata (1) | | | | | +--Arachnida (1) | | | | | +--Acari (1) | | | | | +--Acariformes (1) | | | | | +--Sarcoptiformes (1) | | | | | +--Oribatida (1) | | | | | +--Brachypylina (1) | | | | | +--Oppioidea (1) | | | | | +--Oppiidae (1) | | | | | +--Medioppia subpectinata (1) | | | +--Fungi (1) | | | +--Dikarya (1) | | | +--Ascomycota (1) | | | +--saccharomyceta (1) | | | +--Pezizomycotina (1) | | | +--leotiomyceta (1) | | | +--sordariomyceta (1) | | | +--Sordariomycetes (1) | | | +--Hypocreomycetidae (1) | | | +--Hypocreales (1) | | | +--Clavicipitaceae (1) | | | +--Torrubiella hemipterigena (1) | +--Bacteria (98) | | | +--Actinobacteria (3) | | | | | +--Actinobacteridae (3) | | | | | +--Actinomycetales (3) | | | | | +--Streptomycineae (1) | | | | | | | +--Streptomycetaceae (1) | | | | | | | +--Streptomyces gilvosporeus (1) | | | | | +--Micrococcineae (1) | | | | | | | +--Microbacteriaceae (1) | | | | | | | +--Microbacterium barkeri (1) | | | | | +--Pseudonocardineae (1) | | | | | +--Actinophytocola sp. QAIII60 (1) | | | +--unclassifiedBacteria (1) | | | | | +--Bacteriacandidatephyla (1) | | | | | +--CandidatusDependentiae (1) | | | | | +--candidate division TM6 bacterium Zodletone_IIa (1) | | | +--Proteobacteria (48) | | | | | +--Alphaproteobacteria (2) | | | | | | | +--Rhodobacterales (2) | | | | | | | +--Rhodobacteraceae (2) | | | | | | | +--Phaeobacter sp. CECT 5382 (1) | | | | | | | +--Tropicibacter naphthalenivorans (1) | | | | | +--Gammaproteobacteria (41) | | | | | | | +--unclassifiedGammaproteobacteria (1) | | | | | | | | | +--sulfur-oxidizingsymbionts (1) | | | | | | | | | +--Candidatus Thiodiazotropha endolucinida (1) | | | | | | | +--Enterobacterales (4) | | | | | | | | | +--Yersiniaceae (1) | | | | | | | | | | | +--Serratia sp. DD3 (1) | | | | | | | | | +--Morganellaceae (1) | | | | | | | | | | | +--Xenorhabdus (1) | | | | | | | | | | | +--Xenorhabdus bovienii str. kraussei Quebec (1) | | | | | | | | | +--Enterobacteriaceae (1) | | | | | | | | | | | +--Klebsiella michiganensis (1) | | | | | | | | | +--Erwiniaceae (1) | | | | | | | | | +--Tatumella (1) | | | | | | | | | +--Tatumella ptyseos ATCC 33301 (1) | | | | | | | +--Aeromonadales (1) | | | | | | | | | +--Aeromonadaceae (1) | | | | | | | | | +--Oceanimonas sp. GK1 (1) | | | | | | | +--Methylococcales (1) | | | | | | | | | +--Methylococcaceae bacterium KoM1 (1) | | | | | | | +--Vibrionales (1) | | | | | | | | | +--Vibrionaceae (1) | | | | | | | | | +--Vibrio ishigakensis (1) | | | | | | | +--Xanthomonadales (3) | | | | | | | | | +--Xanthomonadaceae (3) | | | | | | | | | +--Rhodanobacter thiooxydans (1) | | | | | | | | | +--Stenotrophomonas sp. BIIR7 (1) | | | | | | | | | +--Lysobacter enzymogenes (1) | | | | | | | +--Enterobacteriales (29) | | | | | | | | | +--Enterobacteriaceae (29) | | | | | | | | | +--Escherichia coli O127:H6 str. E2348/69 (1) | | | | | | | | | +--Shigella sonnei Ss046 (2) | | | | | | | | | +--Kluyvera cryocrescens (7) | | | | | | | | | +--Yersinia pestis (1) | | | | | | | | | +--Tatumella morbirosei (1) | | | | | | | | | +--Shigella boydii CDC 3083-94 (1) | | | | | | | | | +--Citrobacter koseri ATCC BAA-895 (2) | | | | | | | | | +--Escherichia coli 55989 (1) | | | | | | | | | +--Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- (2) | | | | | | | | | +--Xenorhabdus innexi (1) | | | | | | | | | +--Escherichia coli E24377A (3) | | | | | | | | | +--Escherichia coli O157:H7 (1) | | | | | | | | | +--Candidatus Erwinia dacicola (1) | | | | | | | | | +--Salmonella enterica subsp. arizonae (2) | | | | | | | | | +--Erwinia tracheiphila (1) | | | | | | | | | +--Escherichia blattae DSM 4481 (1) | | | | | | | | | +--Yersinia ruckeri (1) | | | | | | | +--Chromatiales (1) | | | | | | | +--Chromatiaceae (1) | | | | | | | +--Thiocapsa imhoffii (1) | | | | | +--Betaproteobacteria (4) | | | | | | | +--Burkholderiales (1) | | | | | | | | | +--Comamonadaceae (1) | | | | | | | | | +--Acidovorax sp. CF316 (1) | | | | | | | +--Ferrovales (2) | | | | | | | | | +--Ferrovaceae (2) | | | | | | | | | +--Ferrovum sp. Z-31 (2) | | | | | | | +--Neisseriales (1) | | | | | | | +--Neisseriaceae (1) | | | | | | | +--Neisseria mucosa ATCC 25996 (1) | | | | | +--delta/epsilonsubdivisions (1) | | | | | +--Deltaproteobacteria (1) | | | | | +--Desulfobacterales (1) | | | | | +--Desulfobacteraceae (1) | | | | | +--Candidatus Magnetomorum sp. HK-1 (1) | | | +--delta/epsilonsubdivisions (1) | | | | | +--Deltaproteobacteria (1) | | | | | +--Bradymonadales (1) | | | | | +--Lujinxingiaceae (1) | | | | | +--Lujinxingia litoralis (1) | | | +--Firmicutes (4) | | | | | +--Clostridia (3) | | | | | | | +--Clostridiales (3) | | | | | | | +--Pseudoflavonifractor capillosus ATCC 29799 (1) | | | | | | | +--Heliobacteriaceae (1) | | | | | | | | | +--Heliobacterium modesticaldum Ice1 (1) | | | | | | | +--Clostridiaceae (1) | | | | | | | +--Clostridium thermosuccinogenes (1) | | | | | +--Bacillales (1) | | | | | +--Bacillaceae (1) | | | | | +--Virgibacillus salarius (1) | | | +--Pseudomonadota (14) | | | | | +--Alphaproteobacteria (2) | | | | | | | +--Hyphomicrobiales (2) | | | | | | | +--Hyphomicrobiaceae (1) | | | | | | | | | +--Limoniibacter endophyticus (1) | | | | | | | +--Methylobacteriaceae (1) | | | | | | | +--Methylobacterium symbioticum (1) | | | | | +--Gammaproteobacteria (12) | | | | | +--Alteromonadales (1) | | | | | | | +--Psychromonadaceae (1) | | | | | | | +--Psychromonas (1) | | | | | | | +--Psychromonas sp. B3M02 (1) | | | | | +--Vibrionales (1) | | | | | | | +--Vibrionaceae (1) | | | | | | | +--Vibrio agarilyticus (1) | | | | | +--Enterobacterales (7) | | | | | | | +--Yersiniaceae (1) | | | | | | | | | +--Chimaeribacter arupi (1) | | | | | | | +--Enterobacteriaceae (4) | | | | | | | | | +--Citrobacter (3) | | | | | | | | | | | +--Citrobacter sp. JGM124 (3) | | | | | | | | | +--Klebsiella/Raoultellagroup (1) | | | | | | | | | +--Klebsiella (1) | | | | | | | | | +--Klebsiellapneumoniae (1) | | | | | | | | | +--Klebsiella pneumoniae subsp. pneumoniae (strain HS11286) (1) | | | | | | | +--Erwiniaceae (2) | | | | | | | +--Pantoea alhagi (1) | | | | | | | +--Erwinia (1) | | | | | | | +--Erwinia sp. 198 (1) | | | | | +--Cellvibrionales (1) | | | | | | | +--Halieaceae (1) | | | | | | | +--Haliea (1) | | | | | | | +--Haliea sp. SAOS-164 (1) | | | | | +--Xanthomonadales (1) | | | | | | | +--Xanthomonadaceae (1) | | | | | | | +--Lysobacter pythonis (1) | | | | | +--Chromatiales (1) | | | | | +--Ectothiorhodospiraceae (1) | | | | | +--Ectothiorhodospiraceae bacterium WFHF3C12 (1) | | | +--PVCgroup (1) | | | | | +--Planctomycetota (1) | | | | | +--Planctomycetia (1) | | | | | +--Isosphaerales (1) | | | | | +--Isosphaeraceae (1) | | | | | +--Tautonia sociabilis (1) | | | +--Terrabacteriagroup (21) | | | | | +--Actinobacteria (4) | | | | | | | +--Actinobacteria (4) | | | | | | | +--Streptomycetales (2) | | | | | | | | | +--Streptomycetaceae (2) | | | | | | | | | +--Streptomyces sp. CB02400 (1) | | | | | | | | | +--Streptomyces sp. CB01883 (1) | | | | | | | +--Micrococcales (2) | | | | | | | +--Micrococcaceae (1) | | | | | | | | | +--Arthrobacter sp. IHBB 11108 (1) | | | | | | | +--Microbacteriaceae (1) | | | | | | | +--Rathayibacter tanaceti (1) | | | | | +--Cyanobacteriota/Melainabacteriagroup (3) | | | | | | | +--Cyanobacteriota (3) | | | | | | | +--Cyanophyceae (3) | | | | | | | +--Nostocales (1) | | | | | | | | | +--Aphanizomenonaceae (1) | | | | | | | | | +--Cuspidothrix (1) | | | | | | | | | +--Cuspidothrix issatschenkoi CHARLIE-1 (1) | | | | | | | +--Pseudanabaenales (2) | | | | | | | +--Pseudanabaenaceae (2) | | | | | | | +--Pseudanabaenaceae cyanobacterium LEGE 13415 (2) | | | | | +--Actinomycetota (10) | | | | | | | +--Coriobacteriia (1) | | | | | | | | | +--Eggerthellales (1) | | | | | | | | | +--Eggerthellaceae (1) | | | | | | | | | +--Enterorhabdus (1) | | | | | | | | | +--Enterorhabdus sp. P55 (1) | | | | | | | +--Actinomycetes (9) | | | | | | | +--Propionibacteriales (2) | | | | | | | | | +--Propionibacteriaceae (1) | | | | | | | | | | | +--Propioniciclava flava (1) | | | | | | | | | +--Nocardioidaceae (1) | | | | | | | | | +--Nocardioides flavescens (1) | | | | | | | +--Kitasatosporales (4) | | | | | | | | | +--Streptomycetaceae (4) | | | | | | | | | +--Streptomyces (4) | | | | | | | | | +--Streptomyces sp. Ru73 (2) | | | | | | | | | +--Streptomyces sp. Ru72 (1) | | | | | | | | | +--Streptomyces sp. Ru71 (1) | | | | | | | +--Micrococcales (2) | | | | | | | | | +--Micrococcaceae (2) | | | | | | | | | +--Arthrobacter cavernae (1) | | | | | | | | | +--Arthrobacter mobilis (1) | | | | | | | +--Streptosporangiales (1) | | | | | | | +--Thermomonosporaceae (1) | | | | | | | +--Actinomadura (1) | | | | | | | +--Actinomadura sp. WAC 06369 (1) | | | | | +--Bacillota (4) | | | | | +--Clostridia (2) | | | | | | | +--Eubacteriales (2) | | | | | | | +--Oscillospiraceae (1) | | | | | | | | | +--Ructibacterium gallinarum (1) | | | | | | | +--Clostridiaceae (1) | | | | | | | +--Proteiniclasticum aestuarii (1) | | | | | +--Bacilli (2) | | | | | +--Lactobacillales (1) | | | | | | | +--Aerococcaceae (1) | | | | | | | +--Fundicoccus ignavus (1) | | | | | +--Bacillales (1) | | | | | +--Bacillaceae (1) | | | | | +--Alkalicoccobacillus porphyridii (1) | | | +--FCBgroup (3) | | | | | +--Bacteroidetes/Chlorobigroup (2) | | | | | | | +--Bacteroidetes (2) | | | | | | | +--Bacteroidia (1) | | | | | | | | | +--Bacteroidales (1) | | | | | | | | | +--unclassifiedBacteroidales (1) | | | | | | | | | +--Bacteroidales bacterium Barb4 (1) | | | | | | | +--Cytophagia (1) | | | | | | | +--Cytophagales (1) | | | | | | | +--Cyclobacteriaceae (1) | | | | | | | +--Lunatimonas lonarensis (1) | | | | | +--Bacteroidota/Chlorobiotagroup (1) | | | | | +--Bacteroidota (1) | | | | | +--Bacteroidia (1) | | | | | +--Bacteroidales (1) | | | | | +--Bacteroidaceae (1) | | | | | +--Bacteroidaceae bacterium HV4-6-C5C (1) | | | +--Nitrospirae (2) | | | +--Nitrospirales (2) | | | +--Nitrospiraceae (2) | | | +--Candidatus Magnetobacterium bavaricum (2) | +--Viruses (3) | +--Duplodnaviria (2) | | | +--Heunggongvirae (2) | | | +--Uroviricota (2) | | | +--Caudoviricetes (2) | | | +--Cellulophaga phage phi47:1 (2) | +--dsDNAviruses,noRNAstage (1) | +--Caudovirales (1) | +--Siphoviridae (1) | +--Guernseyvirinae (1) | +--Salmonella phage SE2 (1)