# Species tree for RF00085 # Generated from Rfam version 15.00 | +--Eukaryota (229) | +--Metazoa (219) | | | +--Chordata (219) | | | +--Craniata (219) | | | +--Vertebrata (219) | | | +--Euteleostomi (219) | | | +--Lepidosauria (1) | | | | | +--Sphenodontia (1) | | | | | +--Sphenodontidae (1) | | | | | +--Sphenodon punctatus (tuatara) (1) | | | +--Amphibia (4) | | | | | +--Batrachia (4) | | | | | +--Anura (4) | | | | | +--Mesobatrachia (4) | | | | | +--Pipoidea (4) | | | | | +--Pipidae (4) | | | | | +--Xenopodinae (4) | | | | | +--Xenopus (4) | | | | | +--Xenopus (Silurana) tropicalis (western clawed frog) (1) | | | | | +--Xenopus laevis (African clawed frog) (3) | | | +--Mammalia (204) | | | | | +--Monotremata (1) | | | | | | | +--Ornithorhynchidae (1) | | | | | | | +--Ornithorhynchus anatinus (platypus) (1) | | | | | +--Metatheria (4) | | | | | | | +--Dasyuromorphia (1) | | | | | | | | | +--Dasyuridae (1) | | | | | | | | | +--Sarcophilus harrisii (Tasmanian devil) (1) | | | | | | | +--Didelphimorphia (1) | | | | | | | | | +--Didelphidae (1) | | | | | | | | | +--Monodelphis domestica (gray short-tailed opossum) (1) | | | | | | | +--Diprotodontia (2) | | | | | | | +--Vombatidae (1) | | | | | | | | | +--Vombatus ursinus (common wombat) (1) | | | | | | | +--Phascolarctidae (1) | | | | | | | +--Phascolarctos cinereus (koala) (1) | | | | | +--Eutheria (199) | | | | | +--Afrotheria (3) | | | | | | | +--Sirenia (1) | | | | | | | | | +--Trichechidae (1) | | | | | | | | | +--Trichechus manatus latirostris (1) | | | | | | | +--Proboscidea (1) | | | | | | | | | +--Elephantidae (1) | | | | | | | | | +--Loxodonta africana (African savanna elephant) (1) | | | | | | | +--Chrysochloridae (1) | | | | | | | +--Chrysochlorinae (1) | | | | | | | +--Chrysochloris asiatica (1) | | | | | +--Euarchontoglires (100) | | | | | | | +--Primates (52) | | | | | | | | | +--Haplorrhini (43) | | | | | | | | | | | +--Catarrhini (36) | | | | | | | | | | | | | +--Hominidae (10) | | | | | | | | | | | | | | | +--Pongo abelii (Sumatran orangutan) (2) | | | | | | | | | | | | | | | +--Gorilla gorilla gorilla (western lowland gorilla) (2) | | | | | | | | | | | | | | | +--Pan paniscus (pygmy chimpanzee) (2) | | | | | | | | | | | | | | | +--Homo sapiens (human) (2) | | | | | | | | | | | | | | | +--Pan troglodytes (chimpanzee) (2) | | | | | | | | | | | | | +--Hylobatidae (2) | | | | | | | | | | | | | | | +--Nomascus leucogenys (Northern white-cheeked gibbon) (2) | | | | | | | | | | | | | +--Cercopithecidae (24) | | | | | | | | | | | | | +--Cercopithecinae (16) | | | | | | | | | | | | | | | +--Macaca fascicularis (crab-eating macaque) (2) | | | | | | | | | | | | | | | +--Papio anubis (Olive baboon) (2) | | | | | | | | | | | | | | | +--Chlorocebus sabaeus (2) | | | | | | | | | | | | | | | +--Mandrillus leucophaeus (drill) (2) | | | | | | | | | | | | | | | +--Macaca mulatta (Rhesus monkey) (2) | | | | | | | | | | | | | | | +--Theropithecus gelada (gelada baboon) (2) | | | | | | | | | | | | | | | +--Cercocebus atys (sooty mangabey) (2) | | | | | | | | | | | | | | | +--Macaca nemestrina (pig-tailed macaque) (2) | | | | | | | | | | | | | +--Colobinae (8) | | | | | | | | | | | | | +--Colobus angolensis palliatus (2) | | | | | | | | | | | | | +--Rhinopithecus bieti (Black snub-nosed monkey) (2) | | | | | | | | | | | | | +--Piliocolobus tephrosceles (Ugandan red Colobus) (2) | | | | | | | | | | | | | +--Rhinopithecus roxellana (golden snub-nosed monkey) (2) | | | | | | | | | | | +--Platyrrhini (7) | | | | | | | | | | | +--Aotidae (2) | | | | | | | | | | | | | +--Aotus nancymaae (Ma's night monkey) (2) | | | | | | | | | | | +--Cebidae (5) | | | | | | | | | | | +--Saimiriinae (2) | | | | | | | | | | | | | +--Saimiri boliviensis boliviensis (Bolivian squirrel monkey) (2) | | | | | | | | | | | +--Cebinae (2) | | | | | | | | | | | | | +--Cebus apella (Tufted capuchin) (2) | | | | | | | | | | | +--Callitrichinae (1) | | | | | | | | | | | +--Callithrix jacchus (white-tufted-ear marmoset) (1) | | | | | | | | | +--Strepsirrhini (9) | | | | | | | | | +--Lemuriformes (3) | | | | | | | | | | | +--Indriidae (1) | | | | | | | | | | | | | +--Propithecus coquereli (Coquerel's sifaka) (1) | | | | | | | | | | | +--Cheirogaleidae (2) | | | | | | | | | | | +--Microcebus murinus (gray mouse lemur) (2) | | | | | | | | | +--Lorisiformes (6) | | | | | | | | | +--Galagidae (6) | | | | | | | | | +--Otolemur garnettii (small-eared galago) (6) | | | | | | | +--Scandentia (2) | | | | | | | | | +--Tupaiidae (2) | | | | | | | | | +--Tupaia chinensis (Chinese tree shrew) (2) | | | | | | | +--Glires (46) | | | | | | | +--Rodentia (45) | | | | | | | | | +--Hystricognathi (5) | | | | | | | | | | | +--Chinchillidae (1) | | | | | | | | | | | | | +--Chinchilla lanigera (1) | | | | | | | | | | | +--Caviidae (1) | | | | | | | | | | | | | +--Cavia porcellus (Domestic guinea pig) (1) | | | | | | | | | | | +--Bathyergidae (2) | | | | | | | | | | | | | +--Fukomys damarensis (Damara mole-rat) (1) | | | | | | | | | | | | | +--Heterocephalus glaber (naked mole-rat) (1) | | | | | | | | | | | +--Octodontidae (1) | | | | | | | | | | | +--Octodon degus (degu) (1) | | | | | | | | | +--Sciurognathi (40) | | | | | | | | | +--Sciuridae (23) | | | | | | | | | | | +--Xerinae (17) | | | | | | | | | | | | | +--Marmotini (17) | | | | | | | | | | | | | +--Marmota marmota marmota (Alpine marmot) (3) | | | | | | | | | | | | | +--Spermophilus tridecemlineatus (thirteen-lined ground squirrel) (4) | | | | | | | | | | | | | +--Spermophilus parryii (Arctic ground squirrel) (3) | | | | | | | | | | | | | +--Marmota monax (woodchuck) (3) | | | | | | | | | | | | | +--Spermophilus dauricus (Daurian ground squirrel) (4) | | | | | | | | | | | +--Sciurinae (6) | | | | | | | | | | | +--Sciurini (6) | | | | | | | | | | | +--Sciurus carolinensis (gray squirrel) (3) | | | | | | | | | | | +--Sciurus vulgaris (Eurasian red squirrel) (3) | | | | | | | | | +--Muroidea (9) | | | | | | | | | | | +--Spalacidae (2) | | | | | | | | | | | | | +--Spalacinae (2) | | | | | | | | | | | | | +--Nannospalax galili (Upper Galilee mountains blind mole rat) (2) | | | | | | | | | | | +--Muridae (3) | | | | | | | | | | | | | +--Murinae (3) | | | | | | | | | | | | | +--Rattus norvegicus (Norway rat) (1) | | | | | | | | | | | | | +--Mus (2) | | | | | | | | | | | | | +--Mus spicilegus (steppe mouse) (1) | | | | | | | | | | | | | +--Mus musculus (house mouse) (1) | | | | | | | | | | | +--Cricetidae (4) | | | | | | | | | | | +--Cricetinae (1) | | | | | | | | | | | | | +--Cricetulus griseus (Chinese hamster) (1) | | | | | | | | | | | +--Arvicolinae (1) | | | | | | | | | | | | | +--Microtus ochrogaster (prairie vole) (1) | | | | | | | | | | | +--Neotominae (2) | | | | | | | | | | | +--Neotoma lepida (desert woodrat) (1) | | | | | | | | | | | +--Peromyscus maniculatus bairdii (prairie deer mouse) (1) | | | | | | | | | +--Heteromyidae (1) | | | | | | | | | | | +--Dipodomyinae (1) | | | | | | | | | | | +--Dipodomys ordii (Ord's kangaroo rat) (1) | | | | | | | | | +--Dipodidae (2) | | | | | | | | | | | +--Dipodinae (2) | | | | | | | | | | | +--Jaculus jaculus (lesser Egyptian jerboa) (2) | | | | | | | | | +--Castoridae (5) | | | | | | | | | +--Castor canadensis (American beaver) (5) | | | | | | | +--Lagomorpha (1) | | | | | | | +--Leporidae (1) | | | | | | | +--Oryctolagus cuniculus (rabbit) (1) | | | | | +--Laurasiatheria (96) | | | | | +--Carnivora (24) | | | | | | | +--Feliformia (9) | | | | | | | | | +--Hyaenidae (1) | | | | | | | | | | | +--Crocuta crocuta (spotted hyena) (1) | | | | | | | | | +--Herpestidae (1) | | | | | | | | | | | +--Suricata suricatta (meerkat) (1) | | | | | | | | | +--Felidae (7) | | | | | | | | | +--Pantherinae (2) | | | | | | | | | | | +--Panthera tigris altaica (Amur tiger) (1) | | | | | | | | | | | +--Panthera leo (lion) (1) | | | | | | | | | +--Felinae (4) | | | | | | | | | | | +--Puma concolor (puma) (1) | | | | | | | | | | | +--Felis catus (domestic cat) (1) | | | | | | | | | | | +--Lynx pardinus (Spanish lynx) (1) | | | | | | | | | | | +--Lynx canadensis (Canada lynx) (1) | | | | | | | | | +--Acinonychinae (1) | | | | | | | | | +--Acinonyx jubatus (cheetah) (1) | | | | | | | +--Caniformia (15) | | | | | | | +--Otariidae (1) | | | | | | | | | +--Callorhinus ursinus (northern fur seal) (1) | | | | | | | +--Phocidae (2) | | | | | | | | | +--Monachus schauinslandi (Hawaiian monk seal) (1) | | | | | | | | | +--Leptonychotes weddellii (Weddell seal) (1) | | | | | | | +--Mustelidae (4) | | | | | | | | | +--Martinae (1) | | | | | | | | | | | +--Gulo gulo (wolverine) (1) | | | | | | | | | +--Lutrinae (1) | | | | | | | | | | | +--Enhydra lutris kenyoni (1) | | | | | | | | | +--Mustelinae (2) | | | | | | | | | +--Neovison vison (1) | | | | | | | | | +--Mustela putorius furo (domestic ferret) (1) | | | | | | | +--Ursidae (3) | | | | | | | | | +--Ursus americanus (American black bear) (1) | | | | | | | | | +--Ailuropoda melanoleuca (giant panda) (1) | | | | | | | | | +--Ursus maritimus (polar bear) (1) | | | | | | | +--Canidae (4) | | | | | | | | | +--Canis lupus dingo (dingo) (1) | | | | | | | | | +--Vulpes vulpes (red fox) (1) | | | | | | | | | +--Nyctereutes procyonoides (raccoon dog) (1) | | | | | | | | | +--Canis lupus familiaris (dog) (1) | | | | | | | +--Odobenidae (1) | | | | | | | +--Odobenus rosmarus divergens (Pacific walrus) (1) | | | | | +--Cetartiodactyla (45) | | | | | | | +--Tylopoda (8) | | | | | | | | | +--Camelidae (8) | | | | | | | | | +--Vicugna pacos (alpaca) (2) | | | | | | | | | +--Camelus dromedarius (Arabian camel) (2) | | | | | | | | | +--Camelus ferus (Wild Bactrian camel) (2) | | | | | | | | | +--Camelus bactrianus (Bactrian camel) (2) | | | | | | | +--Cetacea (20) | | | | | | | | | +--Odontoceti (14) | | | | | | | | | | | +--Phocoenidae (2) | | | | | | | | | | | | | +--Phocoena sinus (vaquita) (2) | | | | | | | | | | | +--Monodontidae (4) | | | | | | | | | | | | | +--Monodon monoceros (narwhal) (2) | | | | | | | | | | | | | +--Delphinapterus leucas (beluga whale) (2) | | | | | | | | | | | +--Physeteridae (2) | | | | | | | | | | | | | +--Physeter catodon (sperm whale) (2) | | | | | | | | | | | +--Lipotidae (2) | | | | | | | | | | | | | +--Lipotes vexillifer (Yangtze River dolphin) (2) | | | | | | | | | | | +--Delphinidae (4) | | | | | | | | | | | +--Sousa chinensis (Indo-pacific humpbacked dolphin) (2) | | | | | | | | | | | +--Tursiops truncatus (bottlenosed dolphin) (2) | | | | | | | | | +--Mysticeti (6) | | | | | | | | | +--Balaenopteridae (4) | | | | | | | | | | | +--Balaenoptera musculus (Blue whale) (2) | | | | | | | | | | | +--Balaenoptera physalus (Fin whale) (2) | | | | | | | | | +--Eschrichtiidae (2) | | | | | | | | | +--Eschrichtius robustus (grey whale) (2) | | | | | | | +--Ruminantia (14) | | | | | | | | | +--Pecora (14) | | | | | | | | | +--Bovidae (8) | | | | | | | | | | | +--Bovinae (4) | | | | | | | | | | | | | +--Bos indicus (1) | | | | | | | | | | | | | +--Bos (1) | | | | | | | | | | | | | | | +--Bos indicus x Bos taurus (hybrid cattle) (1) | | | | | | | | | | | | | +--Bos taurus (cattle) (1) | | | | | | | | | | | | | +--Bos grunniens mutus (1) | | | | | | | | | | | +--Caprinae (4) | | | | | | | | | | | +--Capra hircus (goat) (2) | | | | | | | | | | | +--Ovis aries (sheep) (2) | | | | | | | | | +--Moschidae (2) | | | | | | | | | | | +--Moschus moschiferus (Siberian musk deer) (2) | | | | | | | | | +--Cervidae (4) | | | | | | | | | +--Odocoileinae (1) | | | | | | | | | | | +--Odocoileus virginianus texanus (1) | | | | | | | | | +--Muntiacinae (1) | | | | | | | | | | | +--Muntiacus reevesi (Chinese muntjac) (1) | | | | | | | | | +--Cervinae (2) | | | | | | | | | +--Cervus elaphus yarkandensis (1) | | | | | | | | | +--Cervus elaphus hippelaphus (1) | | | | | | | +--Suina (3) | | | | | | | +--Tayassuidae (1) | | | | | | | | | +--Catagonus wagneri (Chacoan peccary) (1) | | | | | | | +--Suidae (2) | | | | | | | +--Sus scrofa (pig) (2) | | | | | +--Insectivora (2) | | | | | | | +--Talpidae (1) | | | | | | | | | +--Galemys pyrenaicus (1) | | | | | | | +--Erinaceidae (1) | | | | | | | +--Erinaceinae (1) | | | | | | | +--Erinaceus europaeus (western European hedgehog) (1) | | | | | +--Perissodactyla (3) | | | | | | | +--Equidae (2) | | | | | | | | | +--Equus caballus (horse) (1) | | | | | | | | | +--Equus asinus (ass) (1) | | | | | | | +--Rhinocerotidae (1) | | | | | | | +--Diceros bicornis minor (1) | | | | | +--Chiroptera (22) | | | | | +--Microchiroptera (16) | | | | | | | +--Rhinolophidae (2) | | | | | | | | | +--Hipposiderinae (1) | | | | | | | | | | | +--Hipposideros armiger (1) | | | | | | | | | +--Rhinolophinae (1) | | | | | | | | | +--Rhinolophus ferrumequinum (greater horseshoe bat) (1) | | | | | | | +--Phyllostomidae (1) | | | | | | | | | +--Phyllostominae (1) | | | | | | | | | +--Phyllostomus discolor (pale spear-nosed bat) (1) | | | | | | | +--Molossidae (1) | | | | | | | | | +--Molossus molossus (Pallas's mastiff bat) (1) | | | | | | | +--Vespertilionidae (12) | | | | | | | +--Myotis lucifugus (little brown bat) (2) | | | | | | | +--Eptesicus nilssoni (northern bat) (2) | | | | | | | +--Myotis davidii (2) | | | | | | | +--Pipistrellus kuhlii (Kuhl's pipistrelle) (2) | | | | | | | +--Myotis brandtii (2) | | | | | | | +--Myotis myotis (2) | | | | | +--Megachiroptera (6) | | | | | +--Pteropodidae (6) | | | | | +--Pteropodinae (6) | | | | | +--Rousettus aegyptiacus (Egyptian rousette) (2) | | | | | +--Pteropus vampyrus (large flying fox) (2) | | | | | +--Pteropus alecto (black flying fox) (2) | | | +--Testudines (10) | | | +--Cryptodira (8) | | | | | +--Trionychoidea (1) | | | | | | | +--Trionychidae (1) | | | | | | | +--Pelodiscus sinensis (Chinese softshell turtle) (1) | | | | | +--Chelonioidea (1) | | | | | | | +--Cheloniidae (1) | | | | | | | +--Chelonia mydas (green seaturtle) (1) | | | | | +--Testudinoidea (6) | | | | | +--Emydidae (1) | | | | | | | +--Chrysemys picta bellii (western painted turtle) (1) | | | | | +--Geoemydidae (1) | | | | | | | +--Geoemydinae (1) | | | | | | | +--Mauremys mutica (1) | | | | | +--Chelydridae (2) | | | | | | | +--Chelydra serpentina (snapping turtle) (1) | | | | | | | +--Platysternon megacephalum (big-headed turtle) (1) | | | | | +--Testudinidae (2) | | | | | +--Geochelone nigra abingdoni (1) | | | | | +--Gopherus agassizii (desert tortoise) (1) | | | +--Pleurodira (2) | | | +--Pelomedusidae (2) | | | +--Pelusios castaneus (2) | +--Opisthokonta (10) | +--Metazoa (10) | +--Eumetazoa (10) | +--Bilateria (10) | +--Deuterostomia (10) | +--Chordata (10) | +--Craniata (10) | +--Vertebrata (10) | +--Gnathostomata (10) | +--Teleostomi (10) | +--Euteleostomi (10) | +--Sarcopterygii (10) | +--Dipnotetrapodomorpha (10) | +--Tetrapoda (10) | +--Amniota (10) | +--Sauropsida (2) | | | +--Sauria (2) | | | +--Archelosauria (2) | | | +--Testudinata (2) | | | +--Testudines (2) | | | +--Cryptodira (2) | | | +--Durocryptodira (2) | | | +--Testudinoidea (2) | | | +--Emydidae (1) | | | | | +--Terrapene (1) | | | | | +--Terrapene carolina triunguis (three-toed box turtle) (1) | | | +--Testudinidae (1) | | | +--Gopherus evgoodei (goodes thornscrub tortoise) (1) | +--Mammalia (8) | +--Theria (8) | +--Eutheria (8) | +--Boreoeutheria (8) | +--Euarchontoglires (5) | | | +--Primates (5) | | | +--Haplorrhini (3) | | | | | +--Simiiformes (2) | | | | | | | +--Platyrrhini (2) | | | | | | | +--Cebidae (2) | | | | | | | +--Cebinae (2) | | | | | | | +--Cebus imitator (Panamanian white-faced capuchin) (2) | | | | | +--Tarsiiformes (1) | | | | | +--Tarsiidae (1) | | | | | +--Carlito syrichta (Philippine tarsier) (1) | | | +--Strepsirrhini (2) | | | +--Lemuriformes (2) | | | +--Lemuridae (2) | | | +--Prolemur simus (greater bamboo lemur) (2) | +--Laurasiatheria (3) | +--Artiodactyla (3) | +--Whippomorpha (2) | | | +--Cetacea (2) | | | +--Odontoceti (2) | | | +--Phocoenidae (2) | | | +--Neophocaena (2) | | | +--Neophocaena asiaeorientalis asiaeorientalis (yangtze finless porpoise) (2) | +--Ruminantia (1) | +--Pecora (1) | +--Bovidae (1) | +--Bovinae (1) | +--Bison (1) | +--Bison bison bison (north american plains bison) (1)