Rfam: Seed sequence alignment for RF03142

URS0001A23BAE_12908/1-68 unclassified sequences 0.0 URS0001A238CD_12908/1-63 unclassified sequences 0.0 URS0001A2343E_12908/1-68 unclassified sequences 0.0 URS0001A24029_12908/1-65 unclassified sequences 0.0 URS0001A2400A_12908/1-98 unclassified sequences 0.0 URS0001A235A6_1415756/1-67 Oceanicola sp. MCTG156(1a) 0.0 URS0001A24800_12908/1-71 unclassified sequences 0.0 URS0001A2416F_12908/1-70 unclassified sequences 0.0 URS0001A248E0_12908/1-70 unclassified sequences 0.0 URS0001A23D76_442562/1-68 Rubellimicrobium sp. MSL 20 0.0 URS0001A2332C_12908/1-70 unclassified sequences 0.0 URS0001A23B51_12908/1-70 unclassified sequences 0.0 URS0001A2359E_12908/1-67 unclassified sequences 0.0 URS0001A241F7_12908/1-91 unclassified sequences 0.0 URS0001A23E0C_12908/1-79 unclassified sequences 0.0 URS0001A23B10_1121479/1-79 Pseudodonghicola xiamenensis DSM 18339 0.0 URS0001A23C87_379347/1-102 Ruegeria mobilis 0.0 URS0001A23615_292414/1-102 Ruegeria sp. TM1040 0.0 URS0001A23AB2_1580596/1-109 Phaeobacter piscinae 0.0 URS0001A23827_383629/1-109 Phaeobacter gallaeciensis 2.10 0.0 URS0001A241A4_999548/1-109 Phaeobacter inhibens DSM 16374 0.0 URS0001A24968_1569353/1-109 Phaeobacter sp. S60 0.0 URS0001A242EE_314262/1-109 Roseobacter sp. MED193 0.0 URS0001A24363_999550/1-110 Pseudophaeobacter arcticus DSM 23566 0.0 URS0001A2366B_12908/1-80 unclassified sequences 0.0 URS0001A237A9_12908/1-79 unclassified sequences 0.0 URS0001A23DC2_388739/1-79 Roseobacter sp. SK209-2-6 0.0 URS0001A24646_1577901/1-79 Leisingera sp. ANG-S5 0.0 URS0001A24646_1577897/1-79 Leisingera sp. ANG-DT 0.0 URS0001A24A7C_1577900/1-79 Leisingera sp. ANG-M6 0.0

UGGG.ACCU..UCG................................GGG....CCC.UUCACUUCA......GGCAC...........CUc.........................GCAA..........................................................................gGG.......................G.CGCCG..C..CaAGC.AAACGGA.AGACAGA.-A GGGG.AUCU..UCG................................GAG....CCC.UUUAACCUC......GGGUU...........C-..........................UACG...........................................................................-G.......................A.ACCC-..C..U.AGA.UGACGGA.AGACAGA.AA GGGG.AUCU..ACG................................GAG....CCC.UAUAACCUC......GGGUC...........C-..........................AAGUuauc.......................................................................-G.......................G.GCCCG..C..U.AGC.UGACGGA.AGACAGA.AA GGGG.ACCU..UUG................................GGG....CCC.UAUAAUA--......UGCAA...........GAc.........................UUUUu.........................................................................gUC.......................U.UGCA-..Cg.U.-AC.-AACGGA.AGACAGA.AA GGGG.ACCU..CAG................................GGG....CCC.UACACACAUagaca.GCCGG...........GCcc........................AUACccggcgcgacccaaagagcggaccuc...............................................ugGU.......................C.CGACG..C..A.---.AAACGGA.AGACAGA.AA AGGG.ACCU..UCG................................GGG....CCC.UUCACACAUa.....GGGUC...........G-..........................AAAG...........................................................................-C.......................G.ACCCG..Ua.U.AGCuAAACGGA.AGAGAGC.AA GGGG.ACCU..ACG................................GGG....CCC.UAUCCACCAaga...GACGC...........GGcg........................GCAA.........................................................................cgCU.......................G.CG-CG..-..A.AGC.AGACGGA.AGACAGA.AA GGGG.ACCU..ACG................................GGG....CCC.UAUCGAUCAca....GACGG...........GGcg........................GCAA.........................................................................cgUC.......................C.CG-CG..-..A.AGC.AGACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UUCACCAAAc.....CGAGGc..........GCcg........................GCAA.........................................................................cgGU.......................G.CGCG-..-..A.AGC.AGACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UUCAUCUAAcg....GACGC...........ACc.........................GUAC..........................................................................gGU.......................G.CG-CG..-..A.AGC.AGACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UUCAUAACAcc....GACGG...........GCcg........................GCAA.........................................................................cgGU.......................C.CG-CG..-..A.AGC.AGACGGA.AGACAGA.AA GGGG.ACCU..GCG................................GGG....CCC.UUCAGAUAAcg....GACGG...........ACcg........................GCAA.........................................................................cgGU.......................C.CG-CG..-..A.AGC.AGACGGA.AGACAGA.AA GGGG.ACCU..CUG................................GGG....CCC.UAUAAACCA......GCGAU...........CU..........................UAAU...........................................................................GG.......................G.UCGCG..C..UaAGC.AAACGGA.AGACAGA.AA GGGG.AUCU..UCG................................GAG....CCC.UUCAACC--......GCGCGaaa........GCgaccugaaagcc..............GCAA...............................................................ggaccgaggggcGU.......................U.AUGCG..C..A.AGC.UAACGGA.AGACAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UUUAACAUA......GCGGA...........CCc.........................GCAGgcaagcgccgag..............................................................gGG.......................U.CCGUG..-..U.-GCuAGACGGA.AGACAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UUUAACAUA......GCGGG...........UCc.........................AAAGacaagaaccuaa..............................................................gGA.......................C.CCGUG..-..U.-GCuAGACGGA.AGACAGA.AA GGUC.ACCU..GAAcccggcguggaugcgccaaggca.........GGG....GGC.UUUAACAUA......GCGGU...........GCc.........................AAAGacaagaaccuaa..............................................................gGC.......................A.CUGCA..-..-.CGCuAAACGGA.AGACAGA.AA GGUC.ACCU..GAAcccggcgcggaugcgccaaggca.........GGG....GGC.UUUAACAUA......GCUGG...........GCc.........................AAAGauaauaaccuaa..............................................................gGC.......................U.CGGCA..C..-.-GCuAAACGGA.AGACAGA.AA GGCC.ACCCu.AGUagggcgucucaucuugggacaaccgggc...gGGG....GGC.UUACACAUA......GCUGG...........ACc.........................GAAGacaaaaaccuaa..............................................................gGU.......................C.UGGCA..-..-.CGCuAAACGGA.AGACAGA.AA GGCC.ACCCu.AGUagggcgucucaucgugggacaaccgggc...gGGG....GGC.UUACACAUA......GCGGG...........CCc.........................AAAGacaaaaaccuaa..............................................................gGG.......................U.CUGCA..-..-.CGCuAAACGGA.AGACAGA.AA GGCC.ACCCu.AGUagggcgucucauugugggacaaccgggc...gGGG....GGC.UUACACAUA......GCGGG...........CCc.........................AAAGacaaaaaccuaa..............................................................gGG.......................U.CUGCA..-..-.CGCuAAACGGA.AGACAGA.AA GGCC.ACCCu.AGUagggcgucucaucuugggacaaccgggc...gGGG....GGC.UUACACAUA......GCGGA...........CCc.........................AAAGacaaaaaccuaa..............................................................gGG.......................U.CUGCA..-..-.CGCuAAACGGA.AGACAGA.AA GGCC.ACCU..UAGuagucauuguuccauaggggcaggcggac...GGG...gGGC.UUACACAUA......GCGGG...........UCc.........................AAAGacaaaaaccuag..............................................................gGA.......................U.CCGCA..-..-.CGCuAAACGGA.AGACAGA.AA GGCC.ACCU..UAGuagucauugucccaugggggcucggcggac..GGG...gGGC.UUACACAUA......GCGGG...........UCc.........................AAAGacaauaaccuaa..............................................................gGG.......................U.CCGCA..-..-.CGCuAAACGGA.AGACAGA.AA UGGC.ACCU..ACG................................GGG....GCC.UUUAACAUA......GCUGG...........UCc.........................AAAGacaagaaccuaa..............................................................gGA.......................C.CA-CG..C..A.CGCuAAACGGA.AGACAGA.AA AGGC.ACCU..ACG................................GGG....GCC.UUAAACAUA......GCUGG...........GCc.........................AAAGaaaauaaccuaa..............................................................gGC.......................U.CGGC-..-..A.AGCuAAACGGA.AGACAGA.AA AGGC.ACCU..ACG................................GGG....GCC.UUAAACAUA......GCUGG...........GCc.........................AAAGacaacaaccuaa..............................................................gGC.......................U.CGGCA..C..-.-GCuAAACGGA.AGACAGA.AA AGGC.ACCU..ACG................................GGG....GCC.UUCAACAUA......GCCGG...........GCc.........................AAAGacaagaaccuaa..............................................................gGC.......................C.UGGCA..-..-.CGCuAAACGGA.AGACAGA.AA AGGC.ACCU..ACG................................GGG....GCC.UUCAACAUA......GCCGG...........GCc.........................AAAGacaagaaccuaa..............................................................gGC.......................C.UGGCA..-..-.CGCuAAACGGA.AGACAGA.AA AGGC.ACCU..ACG................................GGG....GCC.UUCAACAUA......GCUGG...........GCc.........................AAAGacaagaaccuaa..............................................................gGC.......................C.UGGCA..-..-.CGCuAAACGGA.AGACAGA.AA