Rfam: Seed sequence alignment for RF03142

URS0001A23F39_1470562/1-91 Aestuariivita boseongensis 0.0 URS0001A241D3_1449350/1-109 Roseivivax halodurans JCM 10272 0.0 URS0001A23C2E_561184/1-81 Antarctobacter sp. JLT354-W 0.0 URS0001A23577_12908/1-81 unclassified sequences 0.0 URS0001A23D6D_12908/1-69 unclassified sequences 0.0 URS0001A23FB7_12908/1-68 unclassified sequences 0.0 URS0001A24196_12908/1-64 unclassified sequences 0.0 URS0001A238B9_12908/1-65 unclassified sequences 0.0 URS0001A23DCC_12908/1-65 unclassified sequences 0.0 URS0001A2458D_12908/1-103 unclassified sequences 0.0 URS0001A2382F_12908/1-122 unclassified sequences 0.0 URS0001A23A7E_12908/1-92 unclassified sequences 0.0 URS0001A24154_12908/1-92 unclassified sequences 0.0 URS0001A24143_12908/1-63 unclassified sequences 0.0 URS0001A23790_12908/1-64 unclassified sequences 0.0 URS0001A2466E_12908/1-63 unclassified sequences 0.0 URS0001A23B66_759362/1-63 Ketogulonigenium vulgarum WSH-001 0.0 URS0001A23A3E_12908/1-63 unclassified sequences 0.0 URS0001A24743_1122180/1-64 Loktanella hongkongensis DSM 17492 0.0 URS0001A2460E_1675527/1-78 Candidatus Rhodobacter lobularis 0.0 URS0001A24051_12908/1-65 unclassified sequences 0.0 URS0001A23841_12908/1-65 unclassified sequences 0.0 URS0001A240B0_1231392/1-65 Oceaniovalibus guishaninsula JLT2003 0.0 URS0001A23B9F_12908/1-70 unclassified sequences 0.0 URS0001A23328_687412/1-66 Pseudorhodobacter sp. HDW-19 0.0 URS0001A23D18_12908/1-62 unclassified sequences 0.0 URS0001A24A04_12908/1-78 unclassified sequences 0.0 URS0001A23E19_12908/1-66 unclassified sequences 0.0 URS0001A23296_12908/1-62 unclassified sequences 0.0 URS0001A23F96_12908/1-73 unclassified sequences 0.0

GGGC.ACCU..AAG................................GGG....GCC.UAUACCUU-......GGGCG...........G-..........................CAUUgccguccucacauauugguugaacu..................................................-C.......................U.GUUCG.aCc.G.AGCuAAACGGA.AGACAGA.AA GGGC.ACCU..ACG................................GGG....GCC.UACAUCCGAag....GCCGG...........GCcu........................CGCGccgcggccgaccacauaggcggacgccccgaccgggggc..................................ggGU.......................CgCUGC-..-..-.UGA.CAACGGA.AGACAGA.AA GGGC.ACCU..GCGgacgcaugucga....................GGG....GCC.UUUCACAUA......GCCCC...........GGac........................ACU-.........................................................................uuCC.......................G.GGGCG..C..U.AGC.UAACGGA.AGACAGA.AA GGGC.ACCU..GCGgacguaugucga....................GGG....GCC.UUUCACAUA......GCCCC...........GGac........................CCU-.........................................................................uuCC.......................G.GGGCG..C..U.AGC.UAACGGA.AGACAGA.AA GGCC.ACCU..ACG................................GGG....GGC.UAUCACAUA......GCCCC...........GGau........................CAU-.........................................................................guCC.......................G.GGGCA..C..U.-GCuAAACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UUCAACUGGcc....GGGCG...........G-..........................GACA...........................................................................-C.......................C.GUCCG..C..AaAGC.-AACGGAaAGACAGAgAA GGGG.ACCU..UCG................................GGG....CCC.UGUAACCUG......GGUCGcuug.......--..........................----...........................................................................--.......................C.GACCC.aCc.U.AGC.UGACGGA.AGACAGA.GA GGGC.ACCU..UCG................................GGG....GCC.UAUAACUUC......GCGGG...........GC..........................UUU-...........................................................................GC.......................C.CUGCA.aC..-.-GCaCAACGGA.AGACAGA.AA GGGC.ACCU..UCG................................GGG....GCC.UUCAACAUC......GCGGG...........GC..........................UCU-...........................................................................GC.......................C.CUGC-..-..UaCGCaCAACGGA.AGACAGA.AA AGGC.ACCU..ACG................................GGG....GCC.UAUACCAC-......CUGCC...........--..........................--ACcuucggggggcuuacaucgcgggggauggccaucgggccgaacuc..............................--.......................GcACUG-..C..U.AG-.AAACGGA.AGACAGU.AA GGGC.ACCU..ACG................................GGG....GCC.UAUAACCUU......GGCACcuuagua....GUu.........................GGCUuugagaucaaaaccagcgagcaggggccuucaucuacgcagagagcacgc........................uCU.......................-.UUGC-..-..-aUGC.ACACGGA.AGACAGA.AA GGGC.ACCU..CCG................................GGG....GCC.UACACCAAUg.....GCGGAugcgucc....GCcc........................AAACauagccccgggcaaaauccg.....................................................ggGC.......................A.CUGC-..-..U.---.-AACGGA.AGACAGA.AA GGGC.ACCU..ACG................................GGG....GCC.UACACCAAUg.....GCGGAugcgucc....GCcc........................AAACauagccccgggcaaaauccg.....................................................ggGC.......................A.CUGC-..-..U.---.-AACGGA.AGACAGA.AA GGGG.AUCU..UCG................................GAG....CCC.UUCAAAU--......GGCCU...........G-..........................CAACgu.........................................................................-C.......................A.GGCC-..Cc.C.UAC.-AACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.UAUAACCAC......AACGA...........UCag........................----.........................................................................cuGA.......................U.CGUU-..UuuA.---.AAACGGA.AGACAGA.AA GUGG.ACCU..ACG................................GGG....CCA.UAUAACCAC......AACGA...........UC..........................AAUU...........................................................................GA.......................U.CGUU-..Ua.A.---.AAACGGA.AGACAGA.AA CGGG.ACCU..UCG................................GGG....CCC.UUCACGU--......GUCGG...........GCa.........................UGAC..........................................................................uGC.......................C.CG-C-..-..AaAGC.AAACGGA.AGACAGA.-A ACGG.ACCU..ACG................................GGG....CCG.UAUAACCAAua....CGA--...........UC..........................AACU...........................................................................GAu......................C.GUUUA..-..A.---.AAACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UUCAACU--......GCCGG...........GUcg........................ACA-.........................................................................cgAC.......................C.CG-C-..-..AaAGC.-AACGGA.AGACACA.AA GGGG.ACCU..UCG................................GGG....CCC.UUUAACAUA......GGCGG...........GUcg........................GCUUucuaaca..................................................................ugGC.......................C.CGCCG.uC..U.AGC.UAACGGA.AGAGAGC.AA GGCC.ACCU..UCG................................GGG....GGC.UUUACCAUA......GCAAG...........GC..........................AUU-...........................................................................GC.......................C.UUGCG.aU..-.AGC.AAACGGA.AGACAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UUUACCAAA......GCAAG...........GC..........................AUU-...........................................................................GC.......................C.UUGCG.aU..-.AGC.AAACGGA.AGACAGA.AA GGGG.ACCU..GCG................................GGG....CCC.UUCACA---......UCCGG...........GCcg........................ACC-.........................................................................ugGC.......................C.CGCA-..C..A.AGC.AGACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UUCACAUUAa.....GCCGG...........GCc.........................UCAGg.........................................................................gUC.......................G.CGGCA..C..A.AGC.AGACGGA.AGACAGA.AA GGGG.AUCU..ACG................................GAG....CCC.UAUAACCUU......GGCCA...........C-..........................AUUUu..........................................................................-G.......................U.GGCC-..Cu.UaAGC.UGACGGA.AGACAGA.GA GGCC.ACCU..UCG................................GGG....GGC.UAACCAUA-......GGCAG...........G-..........................GUAA...........................................................................-C.......................C.UGCCG..C..-.AGC.UAACGGA.AGACAGA.AA GGGC.ACCU..GCGgacuucggucga....................GGG....GCC.UUACAACAUga....GGCAG...........G-..........................GCAA...........................................................................-C.......................C.UGCCG..C..AaAGC.-AACGGA.AGACAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UGUAAACAUa.....GGCAG...........G-..........................CAAGa..........................................................................-C.......................C.UGCCG..U..U.AGC.UAACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.UUCACCAUU......GGCCCcu.........--..........................----...........................................................................--.......................G.GGUCAaaC..A.AGC.AAACGGA.AGACAGC.AA GCGG.ACCU..ACG................................GGG....CCG.CGCACACUU......UCAGCc..........CUugaa......................UUA-.......................................................................uucaAG.......................G.CUGAG..Ca.-.UG-.AAACGGA.AGACAGA.AA