Rfam: Seed sequence alignment for RF03142

URS0001A231E9_571166/1-65 Leisingera nanhaiensis DSM 24252 0.0 URS0001A23CFF_12908/1-70 unclassified sequences 0.0 URS0001A235E4_12908/1-70 unclassified sequences 0.0 URS0001A24ADF_12908/1-74 unclassified sequences 0.0 URS0001A23CF1_12908/1-74 unclassified sequences 0.0 URS0001A23C2A_12908/1-74 unclassified sequences 0.0 URS0001A23F75_290400/1-73 Jannaschia sp. CCS1 0.0 URS0001A24437_12908/1-69 unclassified sequences 0.0 URS0001A23EC0_12908/1-67 unclassified sequences 0.0 URS0001A24009_12908/1-67 unclassified sequences 0.0 URS0001A236E8_12908/1-66 unclassified sequences 0.0 URS0001A2457B_12908/1-61 unclassified sequences 0.0 URS0001A23BFA_12908/1-69 unclassified sequences 0.0 URS0001A248C5_12908/1-69 unclassified sequences 0.0 URS0001A2390E_12908/1-69 unclassified sequences 0.0 URS0001A24612_12908/1-68 unclassified sequences 0.0 URS0001A246B2_12908/1-65 unclassified sequences 0.0 URS0001A23D5B_12908/1-71 unclassified sequences 0.0 URS0001A24A63_12908/1-68 unclassified sequences 0.0 URS0001A23946_12908/1-68 unclassified sequences 0.0 URS0001A2464A_1458307/1-68 Octadecabacter temperatus 0.0 URS0001A2387B_391626/1-67 Octadecabacter antarcticus 307 0.0 URS0001A23868_391616/1-65 Octadecabacter antarcticus 238 0.0 URS0001A2438B_12908/1-68 unclassified sequences 0.0 URS0001A24A3B_391593/1-68 Roseobacter sp. CCS2 0.0 URS0001A24AB7_12908/1-67 unclassified sequences 0.0 URS0001A238C0_1077947/1-67 Pseudorhodobacter sp. ZS3-33 0.0 URS0001A238C0_77008/1-67 Pseudorhodobacter ferrugineus 0.0 URS0001A249E5_1337093/1-72 Loktanella cinnabarina LL-001 0.0 URS0001A24696_12908/1-115 unclassified sequences 0.0

GGGC.ACCU..GCG................................GGG....GCC.UGAACACAGa.....GGCGGagaaau.....--..........................----...........................................................................--.......................C.CGCCG..-..U.AGCuUAACGGA.AGACAGA.AA GGGG.ACCU..GCG................................GGG....CCC.UAUAACCUGaaaa..GACGG...........GGc.........................GAAU..........................................................................gCC.......................C.CG-C-..-..AaAGC.AAACGGA.AGACAGU.AA GGGG.ACCU..UCG................................GGG....CCC.UCUCUCGAAcc....GACGG...........GUcc........................CAA-.........................................................................ggAC.......................C.CG-CG..-..A.AGCaCAACGGA.AGACAGG.AA GGGG.ACCU..GUCacag............................GGG....CCC.UAUAAACCA......CCGGC...........GGgc........................AAAU.........................................................................ucCC.......................-.GUCGG..C..CaAGC.AAACGGA.AGACAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UAUCAACAUa.....GGAGA...........GCgcc.......................GCAAg.......................................................................ggc-C.......................U.CUUCG..Uu.-.UGCuAAACGGA.AGACAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UGUCAACAUa.....GGAGA...........GCgcc.......................GCAAg.......................................................................ggc-C.......................U.CUUCG..Uu.-.UGCuAAACGGA.AGACAGA.AA GGGC.ACCU..ACG................................GGG....GCC.UUUAACAUC......CGGUC...........GCgc........................GAAAcau......................................................................gcGG.......................G.GCCG-..Uc.A.AGC.AAACGGA.AGACAGU.GA GGGG.ACCU..UCG................................GGG....CCC.UUUACCAUCa.....GGGCC...........GC..........................GCAG...........................................................................GC.......................G.GUCCG..Ca.CaAGC.AAACGGA.AGACAGU.AA GGGG.ACCU..UCG................................GGG....CCC.UUCACCACAua....GGCCUuugacc.....--..........................----...........................................................................--.......................A.GGCCG..C..AaAGC.-AACGGAaAGACAGU.AA GGGG.ACCU..UCG................................GGG....CCC.UUGACACCAua....GGCCCaugacc.....--..........................----...........................................................................--.......................G.GGCCG..C..AaAGC.-AACGGAaAGUCAGU.AA GGGC.ACCU..ACG................................GGG....GCC.UUUACCACAua....GGCCU...........C-..........................GCAA...........................................................................-G.......................A.GGCCG..C..CaAGC.AAACGGA.AGA-AGC.UA GGGG.ACCU..UCG................................GGG....CCC.UUUACCACAua....GGCCU...........C-..........................GCAA...........................................................................-G.......................A.GGCCG..C..CaAGC.AAACGGA.AGA----.-- GGGC.ACCU..ACG................................GGG....GCC.UAGAACAUCa.....GGGAA...........GC..........................GAAA...........................................................................GC.......................U.UCCCG..Ca.CaAGC.AAACGGA.AGACAGU.UA GGGC.ACCU..ACG................................GGG....GCC.UAGAACAUCa.....GGGGG...........GC..........................GCAG...........................................................................GC.......................C.UCCCG..Ca.CaAGC.AAACGGA.AGACAGU.UA GGGC.ACCU..ACG................................GGG....GCC.UAGAACAUCa.....GGGGG...........GCg.........................CA--..........................................................................cGC.......................C.UCCCG..Ca.CaAGC.AAACGGA.AGACAGU.UA GGGC.ACCU..ACG................................GGG....GCC.UAUAACAUCg.....GGGCA...........GC..........................GCAA...........................................................................GC.......................C.GCCCA..Ca.C.AGA.AAACGGA.AGACAGU.UA GGGC.ACCU..ACG................................GGG....GCC.UAUAACAUCa.....GGGUC...........C-..........................GCAA...........................................................................-G.......................G.GCCCG..C..CaAGC.AAACGGA.AGA-AGC.UA GGGC.ACCU..ACG................................GGG....GCC.UAUAACAUCa.....GGUUC...........CUgc........................ACG-.........................................................................ucAG.......................G.GACCG..C..CaAGC.AAACGGA.AGA-AGCuAA GGGC.ACCU..ACG................................GGG....GCC.UAUAACAUCa.....GGUUC...........CU..........................AUCU...........................................................................AG.......................G.GACCG..C..CaAGC.AAACGGA.AGAAGCU.AA GGGC.ACCU..ACG................................GGG....GCC.UAUAACAUCa.....GGUUC...........CU..........................AAAU...........................................................................AG.......................G.GACCG..C..CaAGC.AAACGGA.AGAAGCU.AA GGGC.ACCU..ACG................................GGG....GCC.UAUAAACAUca....GGGCC...........ACgc........................----.........................................................................gaGU.......................G.GUCCG..C..CaAGC.AAACGGA.AGU-AGC.AA GGGC.ACCU..ACG................................GGG....GCC.UAUAACAUCa.....GGGCC...........GCgc........................----.........................................................................gaGC.......................G.GUCCG..C..CaAGC.AAACGGA.AGU-AGC.AA GGGC.ACCU..ACG................................GGG....GCC.UAUAACAUCa.....GGGCC...........C-..........................AUAU...........................................................................-G.......................G.GUCCG..C..CaAGC.AAACGGA.AGU-AGC.AA GGGC.ACCU..ACG................................GGG....GCC.UAUAACUUCa.....GGGUC...........UC..........................CUCGc..........................................................................GA.......................G.GCCCG..C..CaAGC.AAACGGA.AGA-AGC.AA GGGC.ACCU..ACG................................GGG....GCC.UUUAACAUCa.....GGGUC...........GC..........................GCAA...........................................................................GU.......................G.GCCCG..Cc.A.AGC.AAACGGA.AGAAGCU.AA UGGU.ACCU..UCG................................GGG....ACC.UAAACACA-......GCCAG...........ACc.........................AAAU..........................................................................gGU.......................U.UGGCA..-..U.AGCuAAACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UGUAACCUA......GGGCC...........GC..........................AAACu..........................................................................GC.......................G.GUCCU..C..A.AGC.UAGCGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UGUAACCUA......GGGCC...........GC..........................AAACu..........................................................................GC.......................G.GUCCU..C..A.AGC.UAGCGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UAAUCACAAcc....GGGCC...........AUcc........................AUUCg........................................................................ggAU.......................C.GCCCG..C..AaAGC.-AACGGA.AGACACA.-A AGGC.ACCUu.AGUagccgguuucuugcgaaaccugcgggc....gGGG....GCC.UUAAACAUAgc....GGCGG...........GU..........................AAACcugccgccagucggggaa.........................................................AC.......................C.CGAC-..U..U.AGCuAAACGGA.AGACAGA.AA