Rfam: Seed sequence alignment for RF03142

URS0001A234B9_12908/1-74 unclassified sequences 0.0 URS0001A245D8_12908/1-74 unclassified sequences 0.0 URS0001A238A1_12908/1-74 unclassified sequences 0.0 URS0001A245E6_12908/1-74 unclassified sequences 0.0 URS0001A23939_12908/1-76 unclassified sequences 0.0 URS0001A2449C_12908/1-42 unclassified sequences 0.0 URS0001A2449C_1300350/1-42 Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 0.0 URS0001A249B1_12908/1-65 unclassified sequences 0.0 URS0001A23A76_12908/1-64 unclassified sequences 0.0 URS0001A24A18_12908/1-66 unclassified sequences 0.0 URS0001A23B44_12908/1-62 unclassified sequences 0.0 URS0001A23F48_12908/1-60 unclassified sequences 0.0 URS0001A233B6_12908/1-62 unclassified sequences 0.0 URS0001A24A65_12908/1-62 unclassified sequences 0.0 URS0001A23578_12908/1-62 unclassified sequences 0.0 URS0001A23FDF_999552/1-109 Leisingera methylohalidivorans DSM 14336 0.0 URS0001A236EC_12908/1-69 unclassified sequences 0.0 URS0001A238AE_12908/1-66 unclassified sequences 0.0 URS0001A238AE_1366046/1-66 Rhodobacteraceae bacterium HIMB11 0.0 URS0001A23E47_12908/1-66 unclassified sequences 0.0 URS0001A2486A_12908/1-67 unclassified sequences 0.0 URS0001A23248_12908/1-66 unclassified sequences 0.0 URS0001A234B8_12908/1-67 unclassified sequences 0.0 URS0001A249A3_12908/1-65 unclassified sequences 0.0 URS0001A2323E_12908/1-66 unclassified sequences 0.0 URS0001A2366E_12908/1-69 unclassified sequences 0.0 URS0001A2426F_1123501/1-71 Wenxinia marina DSM 24838 0.0 URS0001A24166_12908/1-66 unclassified sequences 0.0 URS0001A23569_12908/1-63 unclassified sequences 0.0 URS0001A23569_988812/1-63 Marinovum algicola DG 898 0.0

GGGG.ACCU..UCG................................GGG....CCC.UACAACCAA......CGCGCuuuc.......AUcu........................CGAU.........................................................................ggAU.......................G.CGUG-..Cc.A.AGC.AAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAA......CGCGCuuuc.......AUca........................UGAU.........................................................................ggAU.......................G.CGUG-..C..CaAGC.AAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UAUAACCAA......CGCGCuuucacc....UUg.........................GUG-..........................................................................cGA.......................G.CGUG-..Cc.U.AGC.AAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UAUAACCAA......CGCGCcuucguc....UCg.........................AUG-..........................................................................cGG.......................G.CGUG-..C..CaAGC.AAACGGA.AGACAGA.GA UGGG.ACCU..UCG................................GGG....CCC.UAUAACCAU......CUCGG...........CGuc........................GCUAucua.....................................................................gaUG.......................U.CGGGG.aC..A.AGCaAAACGGA.AGACAGA.GA GCGG.ACCU..ACG................................GGG....CCG.CAUA-----......-----...........--..........................----...........................................................................--.......................-.-----..C..A.AGC.AAACGGA.AGACAGA.GA GCGG.ACCU..ACG................................GGG....CCG.CAUA-----......-----...........--..........................----...........................................................................--.......................-.-----..C..A.AGC.AAACGGA.AGACAGA.GA GCGG.ACCU..ACG................................GGG....CCG.UUCACCAUA......GGGGC...........C-..........................AUUU...........................................................................-G.......................G.CCCCG..-..AaAGCaAAACGGA.AGACAGC.AA GCGG.ACCU..ACG................................GGG....ACG.UUCACCAUA......GGGGC...........C-..........................AACU...........................................................................-G.......................G.CCCCG..-..AaAGCaAAACGGA.AGACAGC.-A GCGG.ACCU..ACG................................GGG....CCG.UUCACAAUA......GGGGC...........C-..........................AACCc..........................................................................-G.......................G.CCCCG..-..AaAGCaAAACGGA.AGACAGA.GA GGGG.ACCU..GCG................................GGG....CCC.UAUAUCGAAac....GGACCgaaa.......--..........................----...........................................................................--.......................G.GUCCA..-..-aAGC.-UACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UUCAUCUAAc.....GGACCuau........--..........................----...........................................................................--.......................G.GUCC-..-..AaAGC.-AACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UUCAUCCACcac...GGACCaug........--..........................----...........................................................................--.......................G.GUCC-..-..AaAGC.-AACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UUCACCAACcac...GGACCaug........--..........................----...........................................................................--.......................G.GUCC-..-..AaAGC.-AACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UAUAAAUCCauc...GGACCuau........--..........................----...........................................................................--.......................G.GUCCA..-..-aAGC.-AACGGA.AGACAGA.GA GGCC.ACCUu.AGUagcuuguuccaaacggaaccugcgggc....gGGG....GGC.UUUCAACAUa.....GCGGG...........UCc.........................AAAGacaauaaccuaa..............................................................gGG.......................C.CUGCA..-..-.CGCuAAACGGA.AGACAGA.AA GGCCuACCG..UUCg...............................GGG....GGC.UUUACCAUG......GGCGG...........G-..........................GAAAa..........................................................................-C.......................U.CGUCGaaC..A.CAC.AAACGGA.AGUCAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UUUACCAUG......GGCGGggagac.....--..........................----...........................................................................--.......................C.CGUCG.aA..CaCAC.AAACGGA.AGUCAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UUUACCAUG......GGCGGggagac.....--..........................----...........................................................................--.......................C.CGUCG.aA..CaCAC.AAACGGA.AGUCAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UUUACCAUG......GGCGG...........G-..........................GAAA...........................................................................-C.......................U.CGUCG..Aa.C.ACAcAAACGGA.AGUCAGA.AA GGCC.ACCU..UCG................................GGG...gGGC.UUUACCAUG......GGCGG...........G-..........................GAAA...........................................................................-C.......................C.CGUCG..Aa.C.ACAcAAACGGA.AGUCAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UUUACCAUG......GGCGG...........G-..........................GAAA...........................................................................-C.......................C.CGUCG.aA..CaCGC.AAACGGA.AGUCAGA.AA GGCC.ACCU..UCGg...............................GGG....GGC.UUUACCAUG......GGCGG...........G-..........................GAAA...........................................................................-C.......................U.CGUCG.aA..CaCAC.AAACGGA.AGUCAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UUUACCAUG......GGCGG...........G-..........................GAAA...........................................................................-C.......................U.CGUCG.aA..CaCAC.AAACGGA.AGUCAGA.-A GGCC.ACCU..UCG................................GGG....GGC.UUUACCAUG......GGCGG...........G-..........................GAAA...........................................................................-C.......................C.CGUCG.aA..CaCAC.AAACGGA.AGUCAGA.AA GGCCaACCU..UCGg...............................GGG....GGC.UUUUACCAUg.....GGCGG...........G-..........................GAAA...........................................................................-C.......................U.CGUCGaaC..A.CAC.AAACGGA.AGUCAGA.AA UGGG.ACCU..UCG................................GGG....CCC.UUCACUGACa.....GCCGG...........GCgc........................CAG-.........................................................................gcGCgc.....................C.CG-C-..-..AaAGC.AAACGGA.AGACAGGaAA GGCC.ACCU..UAU................................GGG....GGC.UUUACCAUA......GCAGA...........GUa.........................----..........................................................................uACu......................U.UGCCG..Ua.CaAGC.-AACGGA.AGAAAGA.AA GGCU.-C--..GCAa...............................--G....AGC.CCAAACAUA......GCGGG...........GC..........................GGAAa..........................................................................GC.......................C.UCGCA..-..U.UGCuAAACGGA.AGACAGA.AA GGCU.-C--..GCAa...............................--G....AGC.CCAAACAUA......GCGGG...........GC..........................GGAAa..........................................................................GC.......................C.UCGCA..-..U.UGCuAAACGGA.AGACAGA.AA