Rfam: Seed sequence alignment for RF03142

URS0001A248AF_12908/1-38 unclassified sequences 0.0 URS0001A24A69_12908/1-38 unclassified sequences 0.0 URS0001A2374D_12908/1-67 unclassified sequences 0.0 URS0001A23214_1185766/1-68 Thioclava dalianensis 0.0 URS0001A239EA_1417296/1-80 Defluviimonas sp. 20V17 0.0 URS0001A2361E_12908/1-62 unclassified sequences 0.0 URS0001A2391E_935700/1-68 Jannaschia sp. GSW-M26 0.0 URS0001A24851_1342299/1-71 Sulfitobacter geojensis 0.0 URS0001A246A2_12908/1-67 unclassified sequences 0.0 URS0001A2480C_12908/1-65 unclassified sequences 0.0 URS0001A2454C_12908/1-66 unclassified sequences 0.0 URS0001A23F54_12908/1-67 unclassified sequences 0.0 URS0001A24AD2_12908/1-65 unclassified sequences 0.0 URS0001A24B1F_12908/1-66 unclassified sequences 0.0 URS0001A246E3_12908/1-66 unclassified sequences 0.0 URS0001A2450F_12908/1-66 unclassified sequences 0.0 URS0001A244DC_1443111/1-70 Sulfitobacter guttiformis KCTC 32187 0.0 URS0001A233C3_12908/1-76 unclassified sequences 0.0 URS0001A2421A_12908/1-76 unclassified sequences 0.0 URS0001A23451_12908/1-76 unclassified sequences 0.0 URS0001A244DB_12908/1-76 unclassified sequences 0.0 URS0001A244DB_52598/1-76 Sulfitobacter sp. EE-36 0.0 URS0001A244DB_314267/1-76 Sulfitobacter sp. NAS-14.1 0.0 URS0001A23232_12908/1-76 unclassified sequences 0.0 URS0001A23C74_12908/1-65 unclassified sequences 0.0 URS0001A23DC7_12908/1-65 unclassified sequences 0.0 URS0001A23C22_12908/1-74 unclassified sequences 0.0 URS0001A24106_12908/1-74 unclassified sequences 0.0 URS0001A2384E_12908/1-74 unclassified sequences 0.0 URS0001A245B3_12908/1-73 unclassified sequences 0.0

AGGG.ACCU..ACG................................GGG....CCC.UA-------......-----au.........--..........................----...........................................................................--.......................-.-----..C..-.---.UAACGGA.AGACAGA.AA AGGG.ACCU..UCG................................GGG....CCC.UA-------......-----a..........--..........................----...........................................................................--.......................-.-----..Uu.C.---.-AACGGA.AGACAGA.AA GGGG.ACCU..CCG................................GGG....CCC.UAAACACCG......GCAGC...........CC..........................UCCG...........................................................................GG.......................G.CCGCA..C..GaAGC.AAACGGA.AGACAGA.AA GGGG.ACCU..UAG................................GGG....CCC.UAUACCAAUcaua..GGCGG...........G-..........................GCAA...........................................................................-C.......................U.CGCCG..C..AaAGC.-AACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UAUACCAACcaua..GGCGG...........G-..........................CCGUuccgaaacggac...............................................................-C.......................C.CGCCG..C..A.AGC.AGACGGA.AGACAGG.AA GGGG.ACCU..ACG................................GGG....CCC.CUUAACCAAc.....GGACCcucu.......--..........................----...........................................................................--.......................G.GUCC-..-..AaAGC.AAACGGA.AGACAGA.AA GGGG.ACCU..ACG................................GGG....CCC.UAUACCCAC......GGCGG...........G-..........................GCGA...........................................................................-C.......................C.CGUCUgaCa.U.AGC.AAACGGA.AGACAGCuGA GGGG.ACCU..UCG................................GGG....CCC.UAUAACCACa.....GGCGG...........GGc.........................AACA..........................................................................uCC.......................C.UGCCG..Ca.C.AGCuAAACGGA.AGACAGA.CA GCGG.ACCU..ACG................................GGG....CCG.CAUAACCUU......UCGGG...........CCcc........................ACA-.........................................................................ugGG.......................U.CUGAG..Cu.A.---.AAACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.CAUAACCUU......UCAGG...........CCc.........................AAAU..........................................................................uGG.......................U.CUGA-..-..-.-GCuAAACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.CAUAACCUU......UCAGG...........CCc.........................AAAU..........................................................................uGG.......................U.CUGAG..Cu.A.---.AAACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.CAUAACCUU......UCAGG...........CCc.........................AAAU..........................................................................uGG.......................U.CUGAG.aCu.A.---.AAACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.CAUAACCUU......UCAGG...........CCc.........................AAAU..........................................................................uGG.......................U.CUGAG..Cu.A.---.AAACGG-.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.CAUAACCUU......UCAGA...........CCc.........................UAAU..........................................................................uGG.......................U.CUGAG..Cu.A.---.AAACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.CAUAACCUU......UCAGG...........CCu.........................UAAU..........................................................................uGG.......................U.CUGAG..Cu.A.---.AAACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.CAUAACCUU......UCAGA...........CCu.........................UAAU..........................................................................uGG.......................U.CUGAG..Cu.A.---.AAACGGA.AGACAGA.AA UGGG.ACCU..UCG................................GGG....CCC.UCUAACCAC......AGCGG...........ACc.........................UACG..........................................................................gGG.......................C.CGCAG.aC..A.AGCaAAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAU......CUCGG...........CGcc........................AUCAccac.....................................................................ggGG.......................C.CGGGG.aC..A.AGCaAAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAU......CUCGG...........CAcc........................AUCAcgac.....................................................................ggCG.......................U.CGGGG.aC..A.AGCaAAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAU......CUCGG...........CAcc........................AGCAcuac.....................................................................ggGG.......................U.CGGGG.aC..A.AGCaAAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAU......CUCGG...........CAcc........................AUCAcgac.....................................................................ggGG.......................C.CGGGG.aC..A.AGCaAAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAU......CUCGG...........CAcc........................AUCAcgac.....................................................................ggGG.......................C.CGGGG.aC..A.AGCaAAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAU......CUCGG...........CAcc........................AUCAcgac.....................................................................ggGG.......................C.CGGGG.aC..A.AGCaAAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAU......CUCGG...........CAcc........................AGCAcgac.....................................................................ggGG.......................C.CGGGG.aC..A.AGCaAAACGGA.AGACAGA.GA GCGG.ACCC..ACG................................GGG....CCG.CAUCACGACa.....ACCGGaccuu......--..........................----...........................................................................--.......................U.UGGUC..Ca.G.AGC.ACACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.CAUCACGACa.....ACCGGaccuu......--..........................----...........................................................................--.......................U.UGGUC..Ca.G.AGC.ACACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UAUAACCAU......CGCGCcuacauu....UU..........................GAUGu..........................................................................GA.......................G.CGUG-..Cc.U.AGC.AAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAA......CGCGCuuucau.....CUc.........................GAUG..........................................................................gAG.......................G.CGUGC..C..A.AGC.AAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAA......CGCGCuuucau.....CUc.........................GGUG..........................................................................gAG.......................G.CGUG-..C..CaAGC.AAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UACAACCAA......CGCGCuuuc.......AUcu........................GAU-.........................................................................ggAU.......................G.CGUG-..C..CaAGC.AAACGGA.AGACAGA.GA