Rfam: Seed sequence alignment for RF03142

URS0001A24A7C_1577902/1-79 Leisingera sp. ANG-M7 0.0 URS0001A24A7C_1577899/1-79 Leisingera sp. ANG-S3 0.0 URS0001A23BBE_391619/1-79 Phaeobacter gallaeciensis DSM 17395 0.0 URS0001A23302_1638950/1-79 Nautella sp. ECSMB14104 0.0 URS0001A23DAE_1577895/1-79 Leisingera sp. ANG-M1 0.0 URS0001A234B5_439496/1-79 Rhodobacterales bacterium Y4I 0.0 URS0001A235D1_999547/1-79 Leisingera daeponensis DSM 23529 0.0 URS0001A2443D_1577896/1-79 Leisingera sp. ANG-Vp 0.0 URS0001A2360B_12908/1-61 unclassified sequences 0.0 URS0001A23BAB_12908/1-61 unclassified sequences 0.0 URS0001A2392F_12908/1-60 unclassified sequences 0.0 URS0001A23200_12908/1-67 unclassified sequences 0.0 URS0001A23EE7_12908/1-66 unclassified sequences 0.0 URS0001A23D2E_12908/1-66 unclassified sequences 0.0 URS0001A23EDA_12908/1-66 unclassified sequences 0.0 URS0001A247E7_12908/1-68 unclassified sequences 0.0 URS0001A238EA_1294273/1-62 Roseibacterium elongatum DSM 19469 0.0 URS0001A23271_12908/1-62 unclassified sequences 0.0 URS0001A23DA0_12908/1-68 unclassified sequences 0.0 URS0001A23C61_12908/1-60 unclassified sequences 0.0 URS0001A23FEB_12908/1-60 unclassified sequences 0.0 URS0001A23C10_12908/1-59 unclassified sequences 0.0 URS0001A245C4_12908/1-95 unclassified sequences 0.0 URS0001A24371_12908/1-89 unclassified sequences 0.0 URS0001A23524_12908/1-89 unclassified sequences 0.0 URS0001A2483B_1530186/1-67 Palleronia rufa 0.0 URS0001A2427B_1342302/1-84 Sulfitobacter noctilucae 0.0 URS0001A2427B_1342301/1-84 Sulfitobacter noctilucicola 0.0 URS0001A24AB4_12908/1-67 unclassified sequences 0.0 URS0001A24B27_12908/1-67 unclassified sequences 0.0

AGGC.ACCU..ACG................................GGG....GCC.UUCAACAUA......GCUGG...........GCc.........................AAAGacaagaaccuaa..............................................................gGC.......................C.UGGCA..-..-.CGCuAAACGGA.AGACAGA.AA AGGC.ACCU..ACG................................GGG....GCC.UUCAACAUA......GCUGG...........GCc.........................AAAGacaagaaccuaa..............................................................gGC.......................C.UGGCA..-..-.CGCuAAACGGA.AGACAGA.AA UGGC.ACCU..ACG................................GGG....GCC.UUAAACAUA......GCUGG...........ACu.........................AAAGacaaaaaccuaa..............................................................gGU.......................C.UGGCA..-..-.CGCuAAACGGA.AGACAGA.AA UGGC.ACCU..ACG................................GGG....GCC.UUAAACAUA......GCUGG...........ACc.........................AAAGacaaaaaccuaa..............................................................gGU.......................C.UGGCA..-..-.CGCuAAACGGA.AGACAGA.AA UGGC.ACCU..ACG................................GGG....GCC.UUAAACAUA......GCUGG...........GCc.........................AAAGacaauaaccuaa..............................................................gGC.......................C.UGGCA..-..-.CGCuAAACGGA.AGACAGA.AA AGGC.ACCU..ACG................................GGG....GCC.UUAAACAUA......GCGGG...........UCc.........................AAAGacaagaaccuaa..............................................................gGG.......................C.CUGCA..-..-.CGCuAAACGGA.AGACAGA.AA AGGC.ACCU..CCG................................GGG....GCC.UUAAACAUA......GCGGG...........UCc.........................AAAGacaagaaccuaa..............................................................gGG.......................C.CUGCA..-..-.CGCuAAACGGA.AGACAGA.AA AGGC.ACCU..ACG................................GGG....GCC.UUAAACAUA......GCGGG...........CCc.........................AAAGacaauaaccuaa..............................................................gGG.......................U.CUGCA..-..-.CGCuAAACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UGCACCUC-......GGGCC...........--..........................CAAG...........................................................................--.......................G.GCCC-..C..NaAAC.AGACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UGCACCUC-......GGGCC...........--..........................CAAG...........................................................................--.......................G.GCCC-..C..CaAAC.AGACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UACACCC--......GGGCC...........--..........................UUUG...........................................................................--.......................G.GCCC-..Cu.G.AAC.AGACGGA.AGACAGA.AA GGGG.ACCU..UUG................................GGG....CCC.UACACACC-......GGCG-...........GUcu........................UAUUg........................................................................agAC.......................A.CGCU-..-..A.AGC.AAACGGA.AGACAGA.AA GGGG.ACCU..UUG................................GGG....CCC.UAAACAUC-......GGCG-...........GUcu........................AUAA.........................................................................agAU.......................A.CGCU-..-..A.AGC.AAACGGA.AGACAGA.AA GGGG.ACCU..UUG................................GGG....CCC.UAAACACC-......GGCG-...........GUcu........................AUAA.........................................................................agAU.......................A.CGCU-..-..A.AGC.AAACGGA.AGACAGA.AA GGGG.ACCU..UUG................................GGG....CCC.UAAACACC-......GGCG-...........GUcu........................AUAA.........................................................................agAC.......................A.CGCU-..-..A.AGC.AAACGGA.AGACAGA.AA GGGC.ACCU..ACG................................GGG....GCC.UAAACCCAA......GCCGG...........G-..........................GCAA...........................................................................-C.......................C.CGGCAgaCa.U.AGCaAAACGGA.AGACAGC.AA GGGG.ACCU..UCG................................GGG....CCC.UUCACCACC......GGGGC...........--..........................UGAC...........................................................................--.......................C.CCCCG..C..AaAGC.-AACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UUCACAACC......GGGGC...........--..........................UGAC...........................................................................--.......................C.CCCCG..C..AaAGC.-UACGGA.AGACAGA.AA GCGG.ACCU..ACG................................GGG....CCG.CAUAACCU-......UUCAAac.........CCc.........................ACAU..........................................................................gGGu......................U.UGAAG..Cu.A.---.AAACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UUAACCC--......GGGUC...........--..........................GCAA...........................................................................--.......................G.GCCCG.aU..-.AGC.UAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UUAACCC--......GGGUC...........--..........................GUAA...........................................................................--.......................G.GCCCG.aU..-.AGC.UAACGGA.AGACAGA.GA GGGG.ACCU..UCG................................GGG....CCC.UAUAACCC-......GGGUC...........--..........................GCAA...........................................................................--.......................G.ACCCG..C..-.AGC.AGACGGA.AGACAGA.-A GGGG.ACCU..AUG................................GGG....CCC.UAUAACAUGa.....GGUGG...........GUu.........................UCACccacccuacacauaggcgaauucaag................................................gAU.......................U.CGCCA..C..U.-GCuAAACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UAUACCAAC......GGUGG...........GCu.........................UCACccacccuacauaagacgggga.....................................................gAC.......................C.CGUC-..-..UaAGCuAAACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UAUACCAAC......GGUGG...........GUu.........................UCACccacccuacauaagacgggga.....................................................gAC.......................C.CGUC-..-..UaAGCuAAACGGA.AGACAGA.AA CGGG.ACCU..ACG................................GGG....CCC.UUAAAUUGC......GGCGG...........G-..........................ACCGa..........................................................................-C.......................C.CGUCG..CcaCaAUC.-AACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UAUAACCAUc.....GGCAG...........--..........................ACACcggccuucaaaagccaucu........................................................--.......................C.UGCCG..Ca.C.AGCuAAACGGA.AGACAGA.CA GGGG.ACCU..UCG................................GGG....CCC.UAUAACCAUc.....GGCAG...........--..........................ACACcggccuucaaaagccaucu........................................................--.......................C.UGCCG..Ca.C.AGCuAAACGGA.AGACAGA.CA GGGG.ACCU..CUG................................GGG....CCC.UAUAAACCAg.....CGAUC...........--..........................UUAAug.........................................................................--.......................G.GUCG-..CacUaAGC.AAACGGA.AGACAGA.AA GGGG.ACCU..UCG................................GGG....CCC.UACACAUAA......GUAGG...........CGgg........................GCAA.........................................................................ccCG.......................U.CU-C-..-..A.AGC.UAACGGA.AGACAGA.AA