Seed sequence alignment for RF03069

URS0000D67EA1_12908/1-180 unclassified sequences 0.0 URS0000D66131_12908/1-181 unclassified sequences 0.0 URS0000D672E9_12908/1-181 unclassified sequences 0.0 URS0000D6BA04_1263002/1-180 Firmicutes bacterium CAG:124 0.0 URS0000D6BA04_12908/1-180 unclassified sequences 0.0 URS0000D66498_12908/1-180 unclassified sequences 0.0 URS0000D67970_12908/1-182 unclassified sequences 0.0 URS0000D6BECE_12908/1-183 unclassified sequences 0.0 URS0000D6670F_12908/1-186 unclassified sequences 0.0 URS0000D65CF1_12908/1-186 unclassified sequences 0.0 URS0000D6658E_12908/1-186 unclassified sequences 0.0 URS0000D672C9_12908/1-182 unclassified sequences 0.0 URS0000D6A3FF_12908/1-182 unclassified sequences 0.0 URS0000D6A641_12908/1-179 unclassified sequences 0.0 URS0000D6D101_12908/1-181 unclassified sequences 0.0 URS0000D6C4AA_12908/1-180 unclassified sequences 0.0 URS0000D69E15_12908/1-180 unclassified sequences 0.0 URS0000D6BCA1_12908/1-183 unclassified sequences 0.0 URS0000D6BCA1_1263006/1-183 Firmicutes bacterium CAG:170 0.0 URS0000D6BB57_12908/1-179 unclassified sequences 0.0 URS0000D68E21_12908/1-170 unclassified sequences 0.0 URS0000D66D9B_12908/1-176 unclassified sequences 0.0 URS0000D65F4C_12908/1-166 unclassified sequences 0.0 URS0000D68C6C_12908/1-166 unclassified sequences 0.0 URS0000D68C6C_1263003/1-166 Firmicutes bacterium CAG:129 0.0 URS0000D668E3_12908/1-166 unclassified sequences 0.0 URS0000D69683_12908/1-166 unclassified sequences 0.0 URS0000D6584B_12908/1-166 unclassified sequences 0.0 URS0000D6AB41_12908/1-180 unclassified sequences 0.0 URS0000D66589_12908/1-180 unclassified sequences 0.0
CUUAGUCGUGGU.G.U...ACCAAUCCACAUUUA.............................................UGGUGCGC.U..GCGG..c...AAAUAUAAAGGAGGAUAUUUUAu..................CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGAA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGAGGU.G.U...ACCAAUCCACAUUUA.............................................UGGUGCGC.U..GCGG..c...AAAUAUAAAGGAGGAUAUUUUAu..................CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGUCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGAUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA..aaCAGUAUGGCA CUUAGUCGAGGU.G.U...ACCAAUCCACAUUUA.............................................UGGUGCGC.U..GCGGc.....AAAUAUAAAGGAGGAUAUUUUAu..................CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGUCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA..aaCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACAUUUA.............................................UGGUGCGC.U..GCGGc.....AAAUAUAAAGGAGGAUAUUUUAu..................CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACAUUUA.............................................UGGUGCGC.U..GCGGc.....AAAUAUAAAGGAGGAUAUUUUAu..................CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACAUUUA.............................................UGGUGCGC.U..GCGGc.....AAAUAUAAAGGAGGAUAUUUUAu..................CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGUCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA UGGUCGGGCUGA.U.U...CCAAAUCCACAUUC-.............................................UUGG---C.A..GCCCgau...AACAAAAAAGGAGGGUAAAACCaaacu..............CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGUA.AUGCGUUCGCC-.............AAGCCC.......................................................-GGCGUUCGCGAGAAUGUGCG-.CGCGGAG........GCG...GCACAG.UCAGGGUCAGU....CAGUAUGGCA UGGUCGGGCUGA.U.U...CCAAAUCCACAUUC-.............................................UUGG---C.A..GCCCgau...AACAAAAAAGGAGGGUAAAACCaaacu..............CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGUA.AUACGUUCGCC-.............AAGCCC.......................................................-GGCGUUCGUGAGAGUGCGCAU.UGCGGAG........GCA...GCGCAG.UCAGAGUCAGA....AACUAUGGCA UUCUGGUCAAGC.U.GguuCCAAAUCCACAUUC-.............................................UUGGCAGC.U..UGAU......AACAAAAAAGGAGGGUAAACCCauugu..............CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGUA.AUACGUUCGCC-.............AAGCCC.......................................................-GGCGUUCGUGAGAAUGCGCCU.UGCGGAG........GCA...GCGCAG.UCAGAGUCAGA....ACCUAUGGCA UUCUGGUCAGGC.U.GguuCCAAAUCCACAUUC-.............................................UUGGCAGC.U..UGAU......AACAAAAAAGGAGGGUAAACCCauugu..............CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGUA.AUACGUUCGCC-.............AAGCCC.......................................................-GGCGUUCGUGAGAAUGCGCCU.UGCGGAG........GCA...GCGCAG.UCAGAGUCAGA....ACCUAUGGCA UUCUGGUCGGGC.U.GauuCCAAAUCCACAUUC-.............................................UUGGCAGC.U..UGAC......AACAAAAAAGGAGGGUAAAACCaaacu..............CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGUA.AUACGUUCGCC-.............AAGCCC.......................................................-GGCGUUCGUGAGAGUGCGCAU.UGCGGAG........GCA...GCGCAG.UCAGAGUCAGA....AACUAUGGCA UCCAACCGGCGC.G.C...ACUAAUCCACACUUUc............................................UGG-GCGC.G..GACG......GUCAAAAAAGGAGGUAUAAACCaugu...............CCGC.GGGACUC.GCGGUGCGGCAUUGU.GGAG............ACAUGUCGUA.AUGCGUUCGCC-.............AAGCCC.......................................................-GGCGUUCGCGAGAAUGUGCG-.CGCGGAG........GCG...GCACAG.UCAGGGUCAGU....CAGUAUGGCA UCCAACCGGCGC.G.C...ACCAAUCCACACUUUc............................................UGG-GCGC.G..GACG......GUCAAAAAAGGAGGUAUAAACCagau...............CCGC.AGGACUC.GCGGUGCGGCAUUGU.GGAG............ACAUGCCGUA.AUGCGUUCGCC-.............AAGCCC.......................................................-GGCGUUCGCGAGAAUGUGCG-.CGCGGAG........GCG...GCACAG.UCAGGGUCAGU....CAGUAUGGCA CUUAGCCGGGGU.A.U...GCCAAUCCACUUUUA.............................................UGGUAUAU.C..CACG......GACAAAAAAGGAGGAAUCAUCAac.................CCGC.-AGACUU.GCGGUGCGGUAUUGU.GGAG............ACAUAUCGCA.AUGCGGCGGCC-.............AGGCCC.......................................................-GGCUGCCGUGAGGGUGCGCG-.CGCGGAG........GCG...GCGCAG.UCAGAGUCGAA....AAACAUGGCA CUGGUCGGAAUA.U.C...GCCAAUCCACAACA-.............................................UGGCC-UG.U..UCCG......GCAAAAAAAGGAGGAUAUAUCAacc................CCGC.AGGACUU.GCGGUGCGGCACAGU.GGAG............ACGUGUCGUA.AUGCGGCAGCC-.............AAGCCC.......................................................-GGCCGCCGUGAGAGAGCGCAU.UGCGGAG........GCA...GCGCUG.UCAGAGUCAGA...aAAUUAUGGCA ---CUGGUCGGA.A.UaucGCCAAUCCACAAUA-.............................................UGGC---C.U..GUUCc.....GGCAAAAAAGGAGGAUAUAUCAacc................CCGC.AGGACUU.GCGGUGCGGCACAGU.GGAG............ACGUGCCGUA.AUGCGGCAGCC-.............AAGCCC.......................................................-GGCCGCCGUGAGAGAGCGCAU.UGCGGAG........GCA...GCGCUG.UCAGAGUCAGA...aAAUUAUGGCA ---CUGGUCGGA.A.UaucGCCAAUCCACAAUA-.............................................UGGC---C.U..GUUCc.....GGCAAAAAAGGAGGAUAUAUCAacc................CCGC.AGGACUU.GCGGUGCGGCACAGU.GGAG............ACGUGUCGUA.AUGCGGCAGCC-.............AAGCCC.......................................................-GGCCGCCGUGAGGGAGCGCAU.UGCGGAG........GCA...GCGCUG.UCAGAGUCAGA...aAAUUAUGGCA -CUGGUCGGGCU.A.U..aGCCAAUCCACAAUUA.............................................UGGCAUAC.U..CCG-......GCUAAAUAAGGAGGAAAUAUCAacau...............CCGC.AGGACUU.GCGGUGCGGCACUGU.GGAG............ACGUGUCGUA.AUGCGGCAGCC-.............AUGCCC.......................................................-GGCCGCCGUGAGGGAGCGCAU.UGCGAAU........GCA...GCGCUG.UCAGAGUCAGA...aAAGUAUGGCA -CUGGUCGGGCU.A.U..aGCCAAUCCACAAUUA.............................................UGGCAUAC.U..CCG-......GCUAAAUAAGGAGGAAAUAUCAacau...............CCGC.AGGACUU.GCGGUGCGGCACUGU.GGAG............ACGUGUCGUA.AUGCGGCAGCC-.............AUGCCC.......................................................-GGCCGCCGUGAGGGAGCGCAU.UGCGAAU........GCA...GCGCUG.UCAGAGUCAGA...aAAGUAUGGCA UUCCAAUCGGGC.G.A...GCCACUCCACUUUC-.............................................UGGUUCGU.C..AC--......GAAGAAAAAGGAGGAAAAAACAua.................CCGU.--GGCCU.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUAuAUGCAUCCGGC-.............ACGUAUgcg....................................................-GCCGGCUGUGAGGUUACAGCU.UGCGGAG........GCA...CUGUAA.CUAAGGUAAGA....-AAGAUGGCG UUCCAAUCGAGC.G.U...AUUACUCCACAAAAA.............................................UAAUACGU.U..GC--......GAGGAAAAAGGAGGAAAAAAAUa..................CCGU.--GGCCU.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUAuAUGCGGAU----.............GGAAUG.......................................................----AUCCGUGAAGUUACAGCA.UGCGGAG........GCA...CUGUAA.CUAAGGCAAGA....-AAGAUGGCA AACCACCCGCGU.C.G...GCUACUCCACCCAA-.............................................UAGCCGCC.G..UGAGg.....AACAUGAAAGGAUCGUUC----...................CCGCcCUGACCG.GCGGG--GGCGGGGG.GGGGggagggggggagCCCUGCCGUA.AAGCGCC-----.............AGAGC-.......................................................-----GGCGCGAGGCCCUGCG-.CGCGGAG........GCG...GCAGAG.CCGCGGUCAGA....GAAUAUGGCA AACCACCCGCGU.C.G...GCUACUCCACCCAA-.............................................UAGCCGCC.G..UGAGg.....AACAUGAAAGGAUCGUUC----...................CCGCcCUGACCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCGCC-----.............AGAGC-.......................................................-----GGCGCGAGGCCCUGCG-.CGCGGAG........GCG...GCAGAG.CCGCGGUCAGA....GAAUAUGGCA AACCACCCGCGG.C.G...GCUACUCCACCCAA-.............................................UAGCCGCC.G..UGAGg.....AACAUGAAAGGAUCGUUC----...................CCGCcCUGACCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCGCC-----.............CGAAC-.......................................................-----GGCGCGAGGCCCUGCG-.CGCGGAG........GCG...GCAGAG.CCGCGGUCAGA....GAAUAUGGCA AACCACCCGCGG.C.G...GCUACUCCACCCAA-.............................................UAGCCGCC.G..UGAGg.....AACAUGAAAGGAUCGUUC----...................CCGCcCUGACCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCGCC-----.............CGAAC-.......................................................-----GGCGCGAGGCCCUGCG-.CGCGGAG........GCG...GCAGAG.CCGCGGUCAGA....GAAUAUGGCA CACCACCCGCGG.C.G...GCUACUCCACCCAA-.............................................UAGCCGCC.G..UGAG...g..AACAUGAAAGGAUCGUUC----...................CCGCcCUGACCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCGUC-----.............CGAAC-.......................................................-----GGCGCGAGGCCCUGCG-.CGCGGAG........GCG...GCAGAG.CCGCGGUCAGA....GAAUAUGGCA CACCACCCGCGG.C.G...GCUACUCCACCCAA-.............................................UAGCCGCC.G..UGAGg.....AACAUGAAAGGAUCGUUC----...................CCGCcCUGACCG.GCGGUGCGGCAGUGU.GGAG............GCCUGCCGUA.AAGCGUC-----.............CGAAC-.......................................................-----GGCGCGAGGCCCUGCG-.CGCGGAG........GCG...GCAGAG.CCGCGGUCAGA....GAAUAUGGCA AACCACCCGCGG.C.G...GCUACUCCACCCAA-.............................................UAGCCGCC.G..UGAGg.....AACAGGAAAGGAUCGUCC----...................CCGCcCUGCCCG.GCGGUGCGGCGGUGU.GGAG............CCCUGCCGUA.AAGCGCC-----.............CGAAC-.......................................................-----GGCGCGAGGCCCUGCG-.CGCGGAG........GCG...GCAGAG.CCGCGGUCAGA....GAAUAUGGCA UCCCUCCCGCCC.G.C...GCUACUCCACCUUCAacg..........................................UAACGCCU.G..UGGGa.....AAUACAAAAGGAGGAACGUUUU...................CCGC.CGAACCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCGGCGCGC-.............UCAG--.......................................................-GCG-GCUGCGAGGCUCUGCAU.CGCGGAG........GCA...GCAGGG.CUGCGGUUCAU....CACUAUGGCA UCCCUCCCGCCC.G.C...GCUACUCCACCUUCAac.................g.........................UAACGCCU.G..CGGGa.....AAUACAAAAGGAGGAACGUUUU...................CCGC.CUAACCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCGGCGCGC-.............UCAG--.......................................................-GCG-GCUGCGAGGCUCUGCAU.CGCGGAG........GCG...GCAGGG.CUGCGGUUCAU....CAUUAUGGCA

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