Seed sequence alignment for RF03069

URS0000D65B04_12908/1-184 unclassified sequences 0.0 URS0000D6599B_12908/1-184 unclassified sequences 0.0 URS0000D6ABF8_12908/1-184 unclassified sequences 0.0 URS0000D690B6_12908/1-182 unclassified sequences 0.0 URS0000D6B59E_12908/1-185 unclassified sequences 0.0 URS0000D6C450_12908/1-185 unclassified sequences 0.0 URS0000D66432_12908/1-183 unclassified sequences 0.0 URS0000D67532_12908/1-183 unclassified sequences 0.0 URS0000D68FD1_12908/1-182 unclassified sequences 0.0 URS0000D6D292_12908/1-182 unclassified sequences 0.0 URS0000D6909E_12908/1-182 unclassified sequences 0.0 URS0000D675B3_12908/1-177 unclassified sequences 0.0 URS0000D699A5_12908/1-174 unclassified sequences 0.0 URS0000D674BB_12908/1-176 unclassified sequences 0.0 URS0000D65DA0_12908/1-175 unclassified sequences 0.0 URS0000D6C8B5_12908/1-175 unclassified sequences 0.0 URS0000D658F9_12908/1-176 unclassified sequences 0.0 URS0000D6D389_12908/1-177 unclassified sequences 0.0 URS0000D65E4C_12908/1-184 unclassified sequences 0.0 URS0000D66F6D_12908/1-179 unclassified sequences 0.0 URS0000D660A5_12908/1-179 unclassified sequences 0.0 URS0000D6A3EB_12908/1-178 unclassified sequences 0.0 URS0000D68F98_12908/1-179 unclassified sequences 0.0 URS0000D66A09_12908/1-179 unclassified sequences 0.0 URS0000D67B85_12908/1-179 unclassified sequences 0.0 URS0000D6BFA0_12908/1-179 unclassified sequences 0.0 URS0000D6D12A_12908/1-179 unclassified sequences 0.0 URS0000D65B5A_12908/1-179 unclassified sequences 0.0 URS0000D68FF0_12908/1-180 unclassified sequences 0.0 URS0000D66265_12908/1-180 unclassified sequences 0.0
CCAGGUGGAUUC.U.G...UCUACUCCACAUAA-.............................................UAGACAGA.A..UACCgc....UAAAAUAAAGGAGGAUAAAC--...................CCGU.CUGACGC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCU-CCCGGAa............UAUUGCu.....................................................uUCCGGUCAGUGAGAACGCAUGC.----GAAaaugguag---...GUGCGU.UCGGCGUCGAA...aCAGUAUGGCA CCAGGUGGAUUC.U.G...UCUACUCCACAUAA-.............................................UAGACAGA.A..AACCgc....UAAAAUAAAGGAGGAUAAAC--...................CCGU.CUGACGC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCU-CCCGGAa............UAUUGCu.....................................................uUCCGGUCAGUGAGAACGCAUGC.----GAAaaugguag---...GUGCGU.UCGGCGUCGAA...aCAGUAUGGCA CCAGGUGGAUUC.U.G...CCUACUCCACAUAA-.............................................UAGACAGA.A..UACCgc....UAAAAUAAAGGAGGAUAAAC--...................CCGU.CUGACGC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCU-CACG-Gaag..........AUUG--....................................................cuuCACGGGCAGCGAGAACGCAC--.---GCGAaaaugguaG--...GUGCGU.UCGGCGUCGAA...aCAGUAUGGCA UCUAACUUUUCU.A.U...GAUACUCAACAUUAA.............................................UACCAUGG.A..AAAG......UAUAAAAAAGGAGGAUAAAC--...................CCGU.CAGACUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCUUA.AAGCU-CCCGGAa............UUUUGCu.....................................................uUCCGGUCAGCGAGAACGCAC--.---GCGAaauaguag---...GUGCAU.UUAGAGUCAAA...aAACUAUGGCA UAAAUCAGAAGU.A.U...GCUACUCCACCAAACa............................................UAGUAUGC.U..UCUG......U-UAAAAAAAGAGGAAAGCAACac.................CCGU.CAGACUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGC-UUCCAGGa............UUUUGCu.....................................................uCCCGGUACGCGAGAAUGCACGC.------Gaaauuuag---...GUGCGU.UUAGAGUCGAG...aAAUUAUGGCA UAAAUCAGAAGU.A.U...GCUACUCCACCAAACa............................................UAGUAUGC.U..UCUG......-UUAAAAAAGGAGGAAAGCAACac.................CCGU.CAGACUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCUUCCAGG-a............UUUUGCu.....................................................uCCCGGUACGCGAGAAUGCACGC.---GAA-..auuuag---...GUGCGU.UUAGAGUCGAG...aAAUUAUGGCA UCCGGUGGAAUG.G.U...ACUACUCCACAAAAA.............................................UAGUUCCA.A..UUCCgc....UAAAAUAAAGGAGGAACCC---...................CCGU.CAGACUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCA-UCUGCUg............UUUUACc.....................................................cGGCAGAUCGCGAGGGCAUACAU.UGAGAAU........UCA...GUAUGU.CCGGAGUCAUA...aAACAAUGGCA UCCGGUGGAAUG.G.U...ACUACUCCACAAAAA.............................................UAGUUCCA.A..UUCCgc....UAAAAUAAAGGAGGAACCC---...................CCGU.CAGACUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCA-UCUGCUg............UUUUACc.....................................................cGGCAGAUCGCGAGGGCAUACAU.UGAGAAU........UCA...GUAUGU.CCGGAGUCAGA...aAACAAUGGCA CCGGCGGGGCUU.-.U...GCUACUCCACAAAAA.............................................UAGCACCG.A..UCCCgc....UAAUAUAAAGGAGGAAACC---...................CCGU.CUGACUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGC-CUCUGCUg............UUUUGCu.....................................................cGGCAGAGCGCGAGGGCAUAUAU.UGAGGAU........UCA...GUAUGU.CCGGAGUCGAA...aAACUAUGGCA CCCGGUGGAGUA.U.G...CCUACUCCACAAAAA.............................................UAGGCAUA.C..UGCGcu....AUUAUUAAAGGAGGAAACC---...................CCGU.UCGGCUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCU-UCCGCUa............UUUUACc.....................................................uGGCGGAAUGCGAGUACACAUCU.UGAGGAU........UCA...GUGUGU.ACGGAGUCAAA....AAACAUGGCA UCCGGUGGAGUA.U.G...CCUACUCCACAGAAA.............................................UAGGCAUA.C..GACGc.....UAAAAUAAAGGAGGAAAACC--...................CCGU.CCGGCUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AAGC-UUCUGCUg............UUUAACc.....................................................cGGCAGAAUGCGAGUGCGCGUAU.UGAGGAU........UCA...GCGCGC.ACGGAGUCAAA....AAACAUGGCA UGAGUAUCUGCC.G.U...CCCACUCCACUUCA-.............................................UGGG-CGG.C..GGA-......CAAAAAGAAGGAGGAAGUGAAAu..................CCCC.-GGGCUC.GGGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AAGCCUCGUCCG.............UGUCAAc......................................................CGGA-GAGGCGAGGGCAUCCCU.GGCGGAG........GCC...GGAUGU.CCGGAGCCUGA....-AUUAUGGCA CACGGUCGAUCG.G.C...UCUACUCCACUCAGA.............................................UAGCUCCG.G..UCC-......GCCAAAAAAGGAGGAAAAAUACccau...............CCGC.CCGACUU.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AUCCGGCG----.............CUUCG-.......................................................----CGUCGGGAGAUGCGCGCA.UGCGGAG........GCA...CGCGCA.UUAAAGUCAGA....-UGUAUGGCA UAAACCCGCCCC.U.C...UGCACUCCACUUCA-.............................................UGCCUGGG.A..GCGGg.....CAAAAGAAAGGAGAAAU-----...................CCGCcUUGUUCA.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGCA.AAGCCCGGAGG-.............ACGAACccg....................................................-CUUUCGGGCGAGACGGGGA--.UGCGGAG........GCA...GACCCG.UUAUGAGCAAA....AUCGAUGGCA UCAAUCCGUCCU.A.C...GGCACUCCACUUUA-.............................................UGCC-UGG.G..AGGGg.....UCAAAGAAAGGAGAAAU-----...................CCGCuUUGUUCA.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGUCCGGGAG-.............AUACAGcug....................................................-CUCCCGGGCGAGACGGGGA--.CGCGAAG........GCG...GAACCG.UUAUGGGCAAG....CAAGAUGGCA UAAACCCGUCCC.A.U...CGCACUCCACUUUA-.............................................UGCG-UGG.G..AGGGg.....CAAAAGAAAGGAGCAAUA----...................CCGCcUUGUUCA.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGUCCGAGGG-.............AUAUAGcug....................................................-CUCUCGGGCGAAACGGGGA--.UGCGGAG........GCU...GAACCG.UUAUGGGCAAA....-AAGAUGGCA UAAACCCGUCCC.A.C...GGCACUCCACUUUA-.............................................UGUCG-GG.G..AUGAg.....CAAAAGAAAGGAGCGAUA----...................CCGCuUUGUUCA.GCGGUGCGGCAGCGU.GGAG............ACCUGCCGUA.AGGCCCACGGG-.............CGAAAGcuu....................................................-CCCAUGGGCGAGACGGGGA--.CGCGGAG........GCG...GAACCG.CCAUGAACAAA....CAAGAUGGCA UCCAUGACC--C.C.G...CCUACUCCACUUUCU.............................................UAGACGGC.A..AGUCa.....UGAAAAAAAGGAGGAUUAAAAC...................GCCC.--UGCUC.GGGCUGCGGCAGUGU.GGAG............ACCUGUCGCA.ACGCAGACCGUUc............CGCGC-......................................................gGGCGG-CUGCAAGCGGUAUCA-.CGCGGAG........GCG...GAUACU.GCGGAGCAAAG....GAACAUGGCA CUUAGCCGGAGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCCC.U..GCGG......UCAAAAAAAGGAGGAUAAAACCagu................CCGG.GUGACUC.CCGGUGCGGCAUUGU.GGAG............ACAUGUCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGCAU.UGCGGAG........GCA...GCGCAG.UCAGAGUCGGA..aaCACUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCCC.U..GCGG......CAAUAAUAAGGAGUAUUUUUUAuc.................CUGG.-AGGCUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAGUGCGA--.UGCGGAG........GCA...GCGCAG.UCAGAGCCCAA...aCAGUAUGGCA CUUAGUCGUAGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCCC.U..GCGG......CAAUAAUAAGGAGGAUUUUUUAu..................CCGG.GAGACUC.CCGGUGCGGCAUUGU.GGAG............ACGUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGCCGUGAGAGUGCGA--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCCC.C..GCGG......CAAUAAUAAGGAGGAUUUUUAU...................CCGG.GAGGCUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCCC.U..GCGG......CAAUAAUAAGGAGGAUUUUUUAu..................CCGG.GAGGCUC.CCGGUGCGGCAUUGU.GGAG............ACGUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGCCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCCC.U..GCGG......CAAUAAUAAGGAGGAUUUUUUAu..................CCGG.GAGGCUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCCC.U..GCGG......CAAUAAUAAGGAGGAUUUUUUAu..................CCGG.GAGGCUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGCCGUGAGAGUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCCC.U..GCGG......CAAUAAUAAGGAGGAUUUUUUAu..................CCGG.GAGGCUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGCCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCUC.U..GCGG......CAAUAAUAAGGAGGAUUUUUUAu..................CCGG.GAGGCUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCAC.U..GCGG......CAAUAAUAAGGAGGAUUUUUUAu..................CCGG.GAGGCUC.CCGGUGCGGCAUUGU.GGAG............ACAUGUCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGAGUCCAA...aCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCCC.U..GCGG......CAAUAAUAAGGAGGAUUUUUUAu..................CCGG.GAGGCUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGGGCCCAA..aaCAGUAUGGCA CUUAGUCGUGGU.G.U...ACCAAUCCACACUUA.............................................UGGUGCUC.U..GCGG......CAAUAAUAAGGAGGAUUUUUUAu..................CCGG.GAGGCUC.CCGGUGCGGCAUUGU.GGAG............ACAUGCCGCA.AUGCGUCCGCC-.............AAGCCC.......................................................-GGCGGUCGUGAGAAUGCGG--.UGCGGAG........GCA...GCGCAG.UCAGGGCCCAA..aaCAGUAUGGCA

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