Rfam: Seed sequence alignment for RF03069

URS0000D65928_12908/1-180 unclassified sequences 0.0 URS0000D69A49_12908/1-180 unclassified sequences 0.0 URS0000D67FFA_12908/1-180 unclassified sequences 0.0 URS0000D6A5CA_12908/1-180 unclassified sequences 0.0 URS0000D6950A_12908/1-180 unclassified sequences 0.0 URS0000D6C1B5_12908/1-180 unclassified sequences 0.0 URS0000D696FD_12908/1-180 unclassified sequences 0.0 URS0000D6B56D_12908/1-181 unclassified sequences 0.0 URS0000D6AF4E_12908/1-181 unclassified sequences 0.0 URS0000D6AFA9_12908/1-178 unclassified sequences 0.0 URS0000D692E3_12908/1-176 unclassified sequences 0.0 URS0000D68E7A_12908/1-177 unclassified sequences 0.0 URS0000D6A4B2_12908/1-181 unclassified sequences 0.0 URS0000D6D01D_12908/1-176 unclassified sequences 0.0 URS0000D6570D_12908/1-185 unclassified sequences 0.0 URS0000D6A8ED_12908/1-184 unclassified sequences 0.0 URS0000D68366_12908/1-184 unclassified sequences 0.0 URS0000D6AE6A_12908/1-186 unclassified sequences 0.0 URS0000D6BED5_12908/1-182 unclassified sequences 0.0 URS0000D6A093_877414/1-176 rumen bacterium NK3B98 0.0 URS0000D6C826_12908/1-178 unclassified sequences 0.0 URS0000D67098_12908/1-178 unclassified sequences 0.0

UUCCGAUCCCGC.C.G...GUCACUCCACAAAC-.............................................UGGCCGCC.G..CGGA......CGAAACAAAGGAGGAAUCCCCCg..................CCGG.-GCGCUC.CCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCA-CAGAGAa............UCCCGCu.....................................................uUCUCUGCUGCGAGAAAGGUCA-.UGCGAAG........GCA...GACCGC.UCAGAGCGAUG....-AUAAUGGCU UUCCGAUCCCGC.C.G...GUCACUCCACAAAC-.............................................UGGCCGCC.G..CGGA......CGAAACAAAGGAGGAAUCCCCCg..................CCGG.-GCGCUC.CCGGUGCGGCAGCGU.GGAG............ACCUGCCGUA.AAGCA-CAGAGAa............UCCCGCu.....................................................uUCUCUGCUGCGAGAAAGGUCG-.UGCGAAG........GCA...GACCGC.UCAGAGCGAUG....-AUAAUGGCU UUCCGACCCCGC.C.G...GUCACUCCACAAAC-.............................................UGGCCGCC.G..CGGA......CGAAACAAAGGAGGAAUCCCCCg..................CCGG.-GCGCUC.CCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCA-CAGAGAa............UCCCGCu.....................................................uUCUCUGCUGCGAGAAAGGUCG-.UGCGAAG........GCA...GACCGC.UCAGAGCGAUG....-AUAAUGGCU UUCCGAUCCCGC.C.G...GCCACUCCACACAC-.............................................UGGCCGCC.G..CGGA......CGAAACAAAGGAGGAAUCCCCCg..................CCGG.-GCGCUC.CCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCA-CAGAGAa............UCCCGCu.....................................................uUCUCUGCUGCGAGAAAGGUCG-.UGCGAAG........GCA...GACCGC.UCAGAGCGAUA....-AUAAUGGCU UUCCGAUCCCGC.C.G...GUCACUCCACACAC-.............................................UGGCCGCC.G..CGGA......CGAAACAAAGGAGGAAUCCCCCg..................CCGG.-GCGCUC.CCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGCA-CAGAGAa............UCCCGCu.....................................................uUCUCUGCUGCGAGAAAGGUCG-.UGCGAAG........GCA...GACCGC.UCAGAGCGAUG....-AUAAUGGCU AUCCGAUCCCCC.C.U...GCCACUCCACAUGC-.............................................UGGCCGGC.C..GGGA......CGAACCAAAGGAGGAAUCACCAc..................CCGG.-GCGCUC.CCGGUGCGGCAGCGU.GGAG............ACCUGCCGUA.AGGCA-CAGGGAa............UUCUGCu.....................................................uUCCCUGCUGCGAGAAAGGCCC-.UGCAAAG........GCA...GACCGA.UCCGAGCGAAA....-GUAAUGGCU AUCCGAUCCCCC.C.U...GCCACUCCACAUGC-.............................................UGGCCGGC.C..GGGA......CGAACCAAAGGAGGAAUCACCAc..................CCGG.-GCGCUC.CCGGUGCGGCAGCGU.GGAG............ACCUGCCGUA.AGGCA-CAGGGAa............UUUUGCu.....................................................uUCCCUGCUGCGAGAAAGGCCC-.UGCAAAG........GCA...GACCGA.UCCGAGCGAAA....-GUAAUGGCU UUCCGAUCCCUC.C.G...GUCACUCCACUUGA-.............................................UGACCGAC.G..GGGA......CGAACCAAAGGAGGAUCAACCAc..................CCGA.GCGC-UC.UCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AGGCA-CGGGGAa............UAUCGCu.....................................................uUCCCCGCUGCGAGACCGGCGA-.UGCAGAG........GCA...GACCGG.UCAGAAGCGAU....AGUAAUGGCU UUCCGAUCCCUC.C.G...ACCACUCCACUUGA-.............................................UGGUCGAC.G..GGGA......CGAACCAAAGGAGGAUCACCCAc..................CCGA.GCGC-UC.UCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AGGCA-CGGGGAa............UAUCACu.....................................................uUCCCCGCUGCGAGACCGGCGA-.UGCAGAG........GCA...GACCGG.UCAGAAGCGAU....AGUAAUGGCU UUCAAUGACGGG.A.C...GCCACUCCACGCAA-.............................................UGGUUUUC.C..GUAC......AUUCAAGAAGGAGGAAGAAGUU...................CCGC.-AGGCUC.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCGGUUCGCAu............CAGCGU......................................................aUGCGA--CGCGAGACAGCCCG-.----GAUa.......GCUuccCGGCUG.UCAGAGCAGGA....GUUUAUGUCU UCCAAUGGGGCG.G.C...GCCACUCCACAUAA-.............................................UGGCCCCG.U..UCAC......AUUCAAGAAGGAGGAAGUCAUC...................CCGC.-AGGCCC.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCGGUUCGCUu............UCAGG-......................................................aAGCGA--CGCGAGAUCGCCCA-.UGCGGAG........GCA...GGGCGA.UCAGGGCAUAC....-GCUAUGUCU -AUAUUUGGCGC.A.G..aUUCACUCCACUCUA-.............................................UGGACUGC.G..CA--......CAAUAAAAAGGAGGUAUGUCCCug.................CCGC.GUGGCUC.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCGUCACGUCc............CUUGC-......................................................gGGCG-GACGCGAGGCGGAUGCG.GGU-GG-........GCC...GCUCUG.CCAGAGCUGA-....GAGCAUGUCC ACAUCUGGCGCA.G.A...AUCACUCCACCAACA.............................................UGAU-CUG.C..GUAC......AAUGAAAAAGGAGGUAUGUCCCuug................CCGC.GUGGCUC.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCGUCACGUCc............CUCCGC......................................................gGACG-GACGCGAGGCGGAUACG.GGUGG--........GCC...GUUCCG.CCAGAGCUGAG....-AGUAUGUCC UCUAUUGGCGGU.C.A...GUCACUCCACAACAA.............................................UGGCUGUC.C..GUAC......AUAAGAAAAGGAGGAAAAA---...................CCGU.-UUGCUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCGGCGCACUc............CAUCGC......................................................gGGUG-GUCGCGAGACGGUAUU-.GGAGGAG........UCC...UUACCG.CCAGAGCAAGG....-CAUAUGUCC UCCAAUGGCGAA.C.G...GUCACUCCACACUA-.............................................UGAGCGUU.C..GUA-......CAUAAAAAAGGAGGAUUAUUA-...................CCGU.-UAGCUU.GCGGUGCGGCAGCGU.GGAG............ACCUGUCGUA.AUGCGGUGCAUCu............UAAGCGcuuuugcaaa............................................gGAUG--CCGCGAGGCGGUUC--.GGAGGAG........UCC...UUUCCG.UCAGAGCAUA-...uGUAAAUGGCA UUUAAUGGCGCU.U.U...CCCACUCCACACCAA.............................................UGGGGCGG.C..GUA-......CAUCAAAAAGGAGGUCAAAAAU...................CCGU.CCGGCUC.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUAaAAGGAACACGUUc............UAUAAAaauc..................................................gAACG-GUUUUGAGAUGAUUUU-.UGCGGAG........GCU...GGAUCA.UCAGAGCUGA-....GAACAUGAGU UUUAAUGGCGCU.U.U...CCCACUCCACACCAA.............................................UGGGGCGG.C..GUA-......CAUCAAAAAGGAGGUCAAAAAU...................CCGU.CCUGCUC.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUAaAAGGAACACGUUc............UAUAAAaauc..................................................gAACG-GUUUUGAGAUGAUUUU-.UGCGGAG........GCU...GGAUCA.UCAGAGCUGA-....GAACAUGAGU UUUAAUGGCGCU.U.U...CCCACUCCACACCAA.............................................UGGGGCGG.C..GUA-......CAUCAAAAAGGAGGUCAAAAAAu..................CCGU.CCGGCUC.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUAaAAGGAACACGUUc............UAAUAAaaauc.................................................gAACG-GUUUUGAGAUGAUUUU-.UGCGGAG........GCU...GGAUCA.UCAGAGCUGA-....GAACAUGAGU UCUCAUGGCGCU.U.U...UCCACUCCACAUCUA.............................................UGGAGGGG.C..GUA-......CAUCCAAAAGGAGGUAAAACAUaa.................CCGU.UUGGCUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGUCGGACGCUc............UGAGAUac....................................................gGGCG-GCGGCGAGGCGGUGA--.UGCGGAG........GCU...GAUCCG.UCAGAGUCGGA....-AGCAUGAGC UCCAAUGGUGCC.A.U...ACCACUCCACCUUA-.............................................UGGUUUGG.C..AUAC......AUUCAAAAAGGAGGAACCAAA-...................CCGG.-AGACUC.CCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGGAACGCACUc............CCUGC-......................................................gGGUG-GUUCCGAGGUAGGUGC-.AGCGGAG........GCU...CAUCUA.UCAGAGUCG-A....AGUUAUGUCC UAGGAGCCGUGC.C.G...GACACUCCACAAAC-.............................................UAUCCGGC.A..CUAGgu....GGAAAAGAAGGAGGAUACAGGU...................CCGU.-AGGCCC.ACGGUGCAGCAGUGU.GGAG............ACCUGCUGUA.AAGCG-GCGGUG.............GAGC--.......................................................CACCGCAUGCGGAGCCGUCCG-.CGCGGAG........GCG...GGGCGG.UCAGGGCUGUA...aCGAUAUGGCA UAGGAGCCGUGC.C.G...GACACUCCACAAAC-.............................................UAUCCGGC.A..CUAGgu....GGAAAAGAAGGAGGAUACAGGU...................CCGU.-AGGCCC.ACGGUGCAGCAGUGU.GGAG............ACCUGCUGUA.AAGCG-GCGGUG.............-GAGC-.......................................................CACCGCAUGCGAGGCCGUCCG-.CGCGGAG........GCG...GGGCGG.UCAGGGCUGUA...aCGAUAUGGCA