Rfam: Seed sequence alignment for RF03069

URS0000D694AF_12908/1-187 unclassified sequences 0.0 URS0000D662B6_12908/1-179 unclassified sequences 0.0 URS0000D69549_12908/1-177 unclassified sequences 0.0 URS0000D6887D_1378168/1-183 Firmicutes bacterium ASF500 0.0 URS0000D6AB54_1235797/1-178 Oscillibacter sp. 1-3 0.0 URS0000D6A9D4_12908/1-175 unclassified sequences 0.0 URS0000D69DEF_12908/1-176 unclassified sequences 0.0 URS0000D6832F_12908/1-176 unclassified sequences 0.0 URS0000D664E1_12908/1-176 unclassified sequences 0.0 URS0000D65B34_12908/1-179 unclassified sequences 0.0 URS0000D684F8_12908/1-184 unclassified sequences 0.0 URS0000D68B89_12908/1-185 unclassified sequences 0.0 URS0000D6C010_12908/1-182 unclassified sequences 0.0 URS0000D6AD52_12908/1-182 unclassified sequences 0.0 URS0000D67880_12908/1-183 unclassified sequences 0.0 URS0000D66ED8_12908/1-206 unclassified sequences 0.0 URS0000D6A918_12908/1-186 unclassified sequences 0.0 URS0000D69FBA_12908/1-186 unclassified sequences 0.0 URS0000D69FAD_12908/1-184 unclassified sequences 0.0 URS0000D66AC0_12908/1-184 unclassified sequences 0.0 URS0000D657DE_12908/1-185 unclassified sequences 0.0 URS0000D6AF28_12908/1-187 unclassified sequences 0.0 URS0000D687B8_1263004/1-188 Firmicutes bacterium CAG:137 0.0 URS0000D66064_12908/1-187 unclassified sequences 0.0 URS0000D68F54_12908/1-187 unclassified sequences 0.0 URS0000D6CDEC_1235835/1-182 Anaerotruncus sp. G3(2012) 0.0 URS0000D66C3F_12908/1-179 unclassified sequences 0.0 URS0000D6BD84_12908/1-182 unclassified sequences 0.0 URS0000D6BA4B_552398/1-181 Ruminococcaceae bacterium D16 0.0 URS0000D6A58F_12908/1-181 unclassified sequences 0.0

AAAUACGGUGCC.G.G...ACGACUCUACAUUCU.............................................UCGUUCGG.C..AAUC......GUAAAAAAAGGAGGCAAUAAUUaac................CCGUaUCGGUUC.GCGGUGCAGCAGUGU.GGAG............ACCUGUUGUA.AUACCUUCGCC-.............ACAUAUgcg....................................................-GGCGCGGGUGAGCUGCGCAGUuAGCGGAU........GCUg..UGCGCG.GCAGAGCCGGA....-GAUAUGGCA -UCCAUUGGCGCgC.G...UCCACUCCACUUCA-.............................................UGGGCGGC.G..UAC-......AUUUCAAAAGGAGGAUCAGCCA..................cCUGU.UGGACUC.ACGGUGCGGCAGCGU.GGAG............ACCUGCCGUA.AUGCGGAGCGUUc............CUUUGC......................................................gGACGC-CUGCGAGGCGAUCG--.UGCGUGG........GCAg..GGGUCG.UCAGAGUCAA-....GCUUAUGUCU UUCGCUGGCGUG.C.G...UUCACUCCACAACA-.............................................UGAACGGC.G..ACC-......AUCAAAAAAGGAGGGUCUAAUCu..................CCGC.GUUACUC.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AUGCGUGUCAUCc............UGCGC-......................................................gGAU-GCGCGCGAGGUGUUCC--.GGCGUGG........GCC...GGAGCA.UCAGAGUAGAG....-CACAUGUCU UUCAAGGGCCGG.G.A..gGCUACUCCAUCACUA.............................................UAGUCCCC.G..GUAC......CAAACAAAAGGAGGAAAAAAA-...................CCGCuGCGGCUU.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AAGCUCCCGGGG.............ACUUCGcug....................................................CUCC-GGGACGAGAUGGAGAA-.GGCGGUG........GCC...GCUCCA.UCAAAGCCGAA....UGCUAUGGCA AACCAGGGCCGC.G.G...GCUGCUCCACUUCCA.............................................CAGCCCCC.G..GUAC......CAAACAAAAGGAGGAAAAC---...................CCGCaGCGGCUU.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AAGUCCUCGGGGc............CGUGC-......................................................gCCCCG-GGACGAGGUGGAGAG-.GGCGGAG........GCC...GCUCCA.UCAAAGCCGAA....GUGUAUGGCA UUUUACCCCUGC.G.G...GUUACUCCACUUAAA.............................................UAAUACGU.G..AAGG......GCUAAAAAAGGAGAGGAUCCG-...................CCGC.--GGCUG.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGGGAUAA---.............UUGCCU.......................................................---UUAUCCCGAGGCCGUUCCU.UGCGGAG........GCA...GAACGG.UCGCAGCCGAA.aaaGAAUAUGGCA UUUAACCCCCGC.G.U...GUUACUCCACUUAAA.............................................UAAUACGU.G..AGGG......GCUAAAAAAGGAGAGGAU----...................CCGCcGCGGCUG.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGGGAUAA---.............UUGCCU.......................................................---UUAUCCCGAGGCCGUUCCU.UGCGGAG........GCA...GAACGG.UCGCAGCCGAAaaaaGAAUAUGGCA UUUAACCCCCGC.G.U...GUUACUCCACUUAAA.............................................UAAUACGU.G..AAGG......GCUAAAAAAGGAGAGGAU----...................CCGCcGCGGCUG.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGGGAUAA---.............UUGCCU.......................................................---UUAUCCCGAGGCCGUUCCU.UGCGGAG........GCA...GAACGG.UCGCAGCCGAAaaaaGAAUAUGGCA UUUUACCCCUGC.G.G...GUUACUCCACUUAAA.............................................UAAUCCGU.G..AAGG......GCUAAAAAAGGAGAGGAU----...................CCGCcGCGGCUG.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGGGAUAA---.............UUGCCU.......................................................---UUAUCCCGAGGCCGUUCCU.UGCGGAG........GCA...GAACGG.UCGCAGCCGAAaaaaGAAUAUGGCA UACCAUGGCGUC.G.U...AUCACUCCACUUAA-.............................................UGG-GCGG.C..GUACau....GUAAAAAAAGGAGGAUUAA---...................CCGU.UCGGCUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCAUUUACUC.............UUUUACc......................................................GGGUACUUGUGAGGCAUUCGU-uAGCGGAG........GCU...GGGAUG.CUAGGGUCGGG....AAAUAUGUCA UCCUGCGCACGG.G.G...CAUACUCCACUUCU-.............................................UAUUUCCC.G..UGAC......GC-UUAAAAGGAGGGAUACCCAu..................CCGC.AAGGCUU.GCGGUGCAGCAGUGU.GGAG............ACCUGCUGUA.AUGCGACCGUUC.............UUCAUUc......................................................GGACGGUUGUGAAUCGGGCGAUgAGCGAAC........GCU..gCGCCUG.AUGAAGCCAAA...aCACUAUGGCA UCCUGCGCACGG.G.G...CAUACUCCACUUCU-.............................................UAUUUCCC.G..UGAC......GCUAAUAAAGGAGGGAUACCCAu..................CCGC.AAGGCUU.GCGGUGCGGCAGUGU.GGAG............ACCUGCUGUA.AUGCGACCGUC-.............ACAUCAucg....................................................-GGCGGUUGCGAGUUGGGCGAUgAGCGAAC........GCU..gCGCCUG.AUGAAGCCAAA...aCACUAUGGCA AUCAUCGCGCGA.G.U...GCCACUCCACUACA-.............................................UGG-ACUC.G..UGACg.....UCUAAAAAAGGAGGCAGUUCUA...................CCGC.-GGACUU.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCGGCUGCCAug...........CAUA--.....................................................cg-GGGAGCCGCGAGUCGGGCAGU.UGAUGAAgu......UCG...UGCCCG.UCAAAGUCAAA....UGGUAUGGCA AUCAUCGCACGA.G.U...ACCACUCCACUACA-.............................................UGG-ACUC.G..UGACg.....UCUAAAAAAGGAGGCAGUUCUA...................CCGC.-GGACUU.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGUA.AUGCGGCUGCC-.............AUGCAUacg....................................................-GGGAGCCGCGAGUCGGGCAGUuGAUGAAG........UUCg..UGCCCG.UCAAAGUCAAA....UGGUAUGGCA CGGCAGGGCA-C.C.G...CUCACUCCACAACA-.............................................UGAACGGC.A..GCCGgcu...GCAGAAAAAGGAGGAACUCAUG...................CCCC.-CAGCCA.GGGGUGCGGCAGUGU.GGAG............ACCUGCCGCA.AAGCGCGGCCGAcg...........UAUG--.....................................................cg-CGG-CGCGUGAGGCGGCUCGUuGAAGGAG........UUCg..GGGCCG.CUAUGGCAAAA....CACUAUGGCA UCGGUCUUUUCC.G.C...UUCACUCCACUUUU-.............................................UGAGGCGG.C..AAGGgcu...GCAUAAAAAGGAGGAAACCCGCcccgccucgaauuggggcgCCCC.UCGGCUU.GGGGUGCGGCACUGU.GGAG............ACGUGCCGCA.AUGCGUGUCCG-.............ACAUAA......................................gcg..............-CGGA-ACGCGAGACGGUUCGUuGGAGAAG........UCCg..GGAUCG.UUAAAGUCAAA..cgCAGUAUGGCA UCGGUCGGACCC.C.G...AGCACUCCACUGUA-.............................................UGUGCGGG.G..AACGgcu...GAAAAUAAAGGAGGAAACCAU-...................CCCC.UCGGCUU.GGGGUGCGGCAGCGU.GGAG............ACCUGUCGCA.AUGCGCGGCCG-.............ACGUAUgcg....................................................-CGG-CGUGCGAGGCGGUUCGUuGAUGAAG........AUCg..GGACCG.UUAAAGUCAAA..cgCAGUAUGGCA UCGGUCGGACCC.C.G...CGCACUCCACUGUA-.............................................UGCACGGG.G..AACGgcu...GAAGAUAAAGGAGGAAAAUGU-...................CCCC.UCGGCUU.GGGGUGCGGCAGUGU.GGAG............ACCUGUCGCA.AAGCGCGGCCG-.............ACGUAUgcg....................................................-CGG-CGCGCGAGACGGUUCGUuGAUGAAG........AUCg..GGGCCG.UUGAAGUCAAA..ugCAGUAUGGCA UCGGCCGGAGCC.C.G...CUCACUCCACUUUU-.............................................UGAACGGG.G..GACGacu...GACAAUAAAGGAGGAAAGAU--...................CCCC.-UGACUU.GGGGUGCGGCAGUGU.GGAG............ACCUGUCGCA.AUGCGCGACCG-.............ACAUAUgcg....................................................-CGG-CGCGCGAGGCGGUUCGUuGAAGGAG........UUCg..GGACCG.UCGAAGUCAAA..ugCAGUAUGGCA UCGGUCGGAACC.G.G...CGCACUCCACUUCA-.............................................UGCGCCGG.C..AACGgcu...GAAAAUAAAGGAGGCAAUCAU-...................CCCU.-CGGCUU.GGGGUGCGGCAGUGU.GGAG............ACCUGUCGCA.AUGCGUGUCCG-.............GCAUUGca.....................................................-CGGA-ACGCGAGACGGUUCGUuGGAGAAG........UCCg..GGGCCG.UUAAAGCCAGA..cgCAGUAUGGCA UCGGCGGGAACC.C.G...UUCACUCCACUUUCU.............................................UGAGCGGG.G..AAACgcu...GCAAAUAAAGGAGGAACUGU--...................CCCC.GCGGCUC.GGGGUACGGCAGUGU.GGAG............ACCUGUCGUA.AAGCGCGGCCG-.............AUGCAAacg....................................................-CGG-CGCGCGAGACGGUCCGUuGAAGAAG........UUCg..GGACCG.UUAGGGCCAGG...aAAACAUGGCA UAGGCGCGAACA.C.A...GUCACUCCACUUAU-.............................................UGAUUGUG.C..GGACgcu...GAAUAAAAAGGAGGAAACUCAU...................CCCC.UCGGCUUgGGGGUGCGGCAGUGU.GGAG............ACCUGUCGCA.ACGCACGAUCG-.............ACGAAUgcg....................................................-CGA-CGUGUGAGGCAGUUCGGuGGAGAAU........UCCg..GGACUG.UUAAAGUCAAA...gCAGUAUGGCA ACAGGGGAGGUA.U.G...UCUACUCCACGCGCAagcga........................................UAGGCCAG.U..CUC-......CCUAAAAAAGGAGGAAUACCAAaac................CCGC.CGGACUC.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGCA.AUGUGGUGUCGCc............AUCCAUg.....................................................gGCG--ACCACGAGAUGCAUGG-.CGCGGAU........GCC...CCUGCA.UCGGAGUCAGA....AUGUAUGGCA ACAGGGGAGGUA.U.G...UCUACUCCACGCGCAagcga........................................UAGGCCAG.U..CUCC......--CUAAAAAGGAGGAAUACAAAaau................CCGC.CGGACUC.GCGGUGCGGCAGUGU.GGAG............ACCUGUCGCA.AUGUGGUGUCGCc............AUCCAUg.....................................................gGCG--ACCACGAGAUGCAUGG-.CGCGGAU........GCC...CCUGCA.UCGGAGUCAGA....AUGUAUGGCA CAGCAGGAGGUC.U.C...UCUACUCCACGCGCAa........................................gccaUAGAGAGG.C..CUC-......UGAAAAAAAGGAGGAAUACCAAaau................CCGC.CGGACUC.GCGGUACGGCAGUGU.GGAG............ACCUGUCGUA.AUGUGGUGUCGCc............AGCAUG......................................................gGCG--ACCACGAGAUGCAUGG-.CGCGGAU........GCC...CCUGCA.UCGGAGUCAGA....ACGUAUGGCA UCAGGCCCCGGC.C.G...GCUACUCCAUUUCCA.............................................UAGGCGGG.A..UGGGc.....CGUAAAAAAGGAGGAAUAUUU-...................CCGU.UUGGCCG.ACGGUGCGGCAGUGU.GGAG............ACCUGUCGCA.AGGUGUGUGGUG.............UUUUGCu......................................................CUCCAUGCAUGAAAGGAUGUU-.CGCGGGG........GCG...GUAUCC.UUACGGCUUGU...gCUCAAUGGCA UUGCAGGCCGGA.G.C...GCUACUCCAUUUCAA.............................................UAGCCAUC.C..GGA-......CCAGAAAAAGGAGGAAAUAUUUg..................CCGC.-CGGCCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AUCCUGUCAGGG.............UUUCGCu......................................................CUCUGGCAGGGAGGUACGUG--.AGCAGAG........GCG...AGCGUA.CUACGGCCUGA....GCCCAUGUCU UUGCAGGCCGGA.G.C...GCUACUCCAUUUCAA.............................................UAGCCAUC.C..GGACc.....AGARAAAAAGGAGGAAAAUAUUug.................CCGC.-CGGCCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AUCCUGUCAGGG.............UUUCGCu......................................................CUCUGGCAGGGAGGUACGUG--.AGCAGAG........GCG...AGCGUA.CUACGGCCUGA....GCCCAUGUCU UUGCAGGCCGGA.G.C...GCUACUCCAUUUCAA.............................................UAGCCAUC.C..GGAC......CAGAAAAAAGGAGGAAAAUAAUug.................CCGC.-CGGCCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AUCCUGUCAGGG.............UUUCGCu......................................................CUCUGGCAGGGAGGUACGCG--.AGCAGAG........GCG...AGCGUA.CUACGGCCUGA....GCCCAUGUCU UUGCAGGCCGGA.G.C...GCUACUCCAUUUCAA.............................................UAGCCAUC.C..GGAC......CAGAAAAAAGGAGGAAAAUAUUug.................CCGC.-CGGCCG.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AUCCUGUCAGGG.............UUUCGCu......................................................CUCUGGCAGGGAGGUACGUG--.AGCAGAG........GCG...AGCGUA.CUACGGCCUGA....GCCCAUGUCU