Rfam: Seed sequence alignment for RF03069

URS0000D67316_12908/1-196 unclassified sequences 0.0 URS0000D6AA79_12908/1-165 unclassified sequences 0.0 URS0000D65771_693746/1-179 Oscillibacter valericigenes Sjm18-20 0.0 URS0000D68BBB_12908/1-178 unclassified sequences 0.0 URS0000D6B51B_12908/1-181 unclassified sequences 0.0 URS0000D68FA3_699246/1-165 Clostridiales genomosp. BVAB3 str. UPII9-5 0.0 URS0000D670D2_12908/1-196 unclassified sequences 0.0 URS0000D6D1DA_12908/1-171 unclassified sequences 0.0 URS0000D6D120_12908/1-247 unclassified sequences 0.0 URS0000D6655B_12908/1-177 unclassified sequences 0.0 URS0000D6A2FA_12908/1-178 unclassified sequences 0.0 URS0000D6AB70_12908/1-178 unclassified sequences 0.0 URS0000D6A6CF_12908/1-172 unclassified sequences 0.0 URS0000D679D9_12908/1-173 unclassified sequences 0.0 URS0000D67D20_12908/1-174 unclassified sequences 0.0 URS0000D6B396_12908/1-182 unclassified sequences 0.0 URS0000D6C85A_12908/1-187 unclassified sequences 0.0 URS0000D688A8_12908/1-184 unclassified sequences 0.0 URS0000D6A260_12908/1-180 unclassified sequences 0.0 URS0000D671A2_12908/1-180 unclassified sequences 0.0 URS0000D6CB80_12908/1-180 unclassified sequences 0.0 URS0000D6A043_12908/1-184 unclassified sequences 0.0 URS0000D691A4_12908/1-181 unclassified sequences 0.0 URS0000D6B584_12908/1-176 unclassified sequences 0.0 URS0000D6A7A1_12908/1-187 unclassified sequences 0.0 URS0000D6BA67_12908/1-188 unclassified sequences 0.0 URS0000D6CBCB_12908/1-188 unclassified sequences 0.0 URS0000D660B3_12908/1-188 unclassified sequences 0.0 URS0000D67949_12908/1-185 unclassified sequences 0.0 URS0000D69041_12908/1-185 unclassified sequences 0.0

AAUCCCCGCCCU.G.U...UUCACUUUACCAAAUgcuggguucuauggggcccgguggagagacugaucguaaugcccuUGGAGCAG.G..GAAGaaaauaAUUUAGAAAGGAGAUU------...................CCGCcCCAGCUU.GCGGUGCGGCC----.GAAA............---GGCUGUA.AGGCAUCCC---.............GGAGAG.......................................................---GGGAGGCAAGGC-------.---GAAA........---...-----G.CCAAAGCUGUA....GAGUAUGGCA ACAGUAACUAAU.A.C...UGCGCUCCAC-----.............................................CGU---AU.U..GGCG......GUAAAAAAAGGAGGAA------...................CCGU.--AGCUC.GCGGGUCAGCAUUGU.GGAG............ACGUGCUGAGaAUGCCUCAUAUC.............CUUUGUguc....................................................GGUAUGAGGUGAGGCAGGAA--.UCCGGAG........GGA...GAACUG.UCAGAGCAAG-....-UCAAUGUCG AAAUAUCCGUGC.G.C...AUAACUCCACAGUA-.............................................UUAUGCGC.A..CAGA......UUCAGAAAUGGAGGAUGGAAUU...................CCGC.UCAACUU.GUGGUGCGGUAGUGU.GGAG............AUCUACCGUA.AAGUACGCGGCUu............UCAA--......................................................aAGCUGGGUGCGAGGGGAGUCCU.--CGAAAaa......-G-..gGACUUG.CCAAAGUAAUG....AUCGAUGGCU UCUGAUCAUUCC.G.U...GUCAAUCCACUAUUA.............................................UGGCACGG.C..G---......UGUUAAAAGGGAGGAAGGGUCAga.................CCGC.AGGACUU.GCGGUGCGGUAUUGU.GGAG............ACAUACCGCA.AGGUUUCCAUCA.............AGCC--.......................................................UGAUGGUUACAAGGCGGCU---.UCUUGCAa.......AGAu.uCAGCCG.UCAUAGUCGAA....UGUUAUGGCA UUCCAAUGGACA.G.C...GUGACUCCACAGAAAa............................................CCACGCCG.U..U---......CCAUGACAAGAAGGAGGAAAACa..................CCGU.-CAGCUC.ACGGUGCGGCAGCGU.GGAG............ACCUGCCGUA.AUGCGAUCACAU.............ACACAGcg.....................................................AUGUG--CGCGAGAACAGUUCA.GGCAUUGg.......ACC...GAUUGU.UCAGAGCAAAA...aUAACAUGGCA AGAACAACAACC.G.C...CCCUCUCCAUAAUCC.............................................-GGGGCA-.-..----......ACUCAAACAGGAGGUU------...................CCGC.-ACAUCG.GCGGUGCGACAAUGU.GGAG............ACGUGUCGUA.AAGUCUGAGGG-.............UUCGACcc.....................................................-CCUCAAGGCAAGGUAAAUGA-.-GCAGAG........GC-..gAAUUUA.UCACGAUGGGU....AGAUAUGGCA AAACACGCACAG.C.G...GAUACUUCAUCAGGCggaguauacuucguca.............................UAUCCGUU.G..UAGC......GAACAAAAAGGAGGAAUAAACGaa.................CCGU.CCGGCUU.GCGGUGCGGCAGUGU.GAAG............ACCUGUCGUA.AGGUCCGGCUCC.............CCGGC-.......................................................GGAGCAGGGCGAGGUGUGUAC-.AGAGGAG........UCU...GCCACA.CUUAAGCUGC-....UAAUAUGGCA UCGAAAGGACGG.G.A...UCUACUCCACGCAACca...........................................UAGAUGCC.G..UC--......UGACAAAAAGGAGGAUAAGCUU...................CCGU.-CGGCUC.ACGGUGCGGCAGUGU.GGAG............AUCUGCCGCA.AGGCAGAAACC-.............AGAU--.......................................................-GGAUUCCGCGAGGAUCCUUC-.---CAGCc.......---..gGAGGAU.CCGGAGCUUCA....AAAAAUGGCA AUACAAUGGCGG.C.G...CGCACUCCAUUUCU-.............................................UGGGCGUC.G..UAC-......AUCAAAAAAGGAGGAAAUGCAUaa.................CCGC.-AGACUC.GCGGUGCAGCAGUGU.GGAG............ACCUGUUGUA.AUGCAGCGGGCUuggcgagaaggucCAGAGGaucccgaagagcgauuccgugcgcacagcgggaugucagcagacgcuucgcgccgUGGCCACUGCGAGUGUAUAUUCaGC-GGAU........-GC..cGUAUAC.ACAGAGUCG--...uUUCAAUGGCU UACAGCGCUGCC.G.U...AUUACUCCACACAU-.............................................UAAUGCGG.C..GGCG......UUAAAUAAAGGAGGAUAUAGAU...................CCGU.AUGGCUU.GCGGUGUAGCAGUGU.GGAG............ACCUGCUAUA.AUGCGUACGG--.............UGGAGUau.....................................................--CUGUACGCGAGGCGUGUUUU.-GCGGAG........GCU...GAUGCG.CCAGAGCCAAA....GAAUAUGGCA AUAUCCGUUUCG.G.C...ACUACUCCACUCAUAa............................................UAG-GCCG.C..GGCG......GGGAACGAAGGAGGAUGCGU--...................CCGCuGUUGCUG.GCGGUGCGGCAGCGU.GGAG............ACCUGCCGUA.AGGCCGCGCGG-.............GUAAUG.......................................................-CCG-GCGGCGAGCUUCUUUUU.GCCGGAG........GGC...GAAGGA.GCGCAGCAAAA...aACAUAUGGCA AUAUCCGUUUCG.G.C...ACUACUCCACUCAUCa............................................UAG-GCCG.C..GGCG......GGGAACGAAGGAGGAUGCGU--...................CCGCuGUGGCUG.GCGGUGGGCCAGCGU.GGAG............ACCUGCCGUA.AGGCCGCGCGG-.............GUAAUG.......................................................-CCG-GCGGCGAGCUUCUUUUU.GCCGGAG........GGC...GAAGGA.GCGCAGCAAAA...aACAUAUGGCA UAUACGGCUUCG.C.C...AGCUCUCCAUGAUAUc............................................AGCU-UCG.G..AGCCa.....GAUCAAAAAGGAGGAAUA----...................CCAC.-AGGCCU.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AGCCGUGUUGU-.............UUUG--.......................................................-ACAAC-CGGGAGAAAGCGUA-.UGCGGAG........GCA...GCGCUU.UCAGGGUCUUA...uUGCCAUGGCA CUAUACGGCUUC.G.C..cAGCUCUCCAUGAUAUc............................................AGCUUCGG.A..GCCA......GAUCAAAAAGGAGGAAUA----...................CCGC.-AGGCCU.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AGCCGUGUUGU-.............UUUG--.......................................................-ACAA-CCGGGAGAAAGCGUA-.UGCGGAG........GCA...GCGCUU.UCAGGGUCUUA...uUGCCAUGGCA AUUUGGCUUACG.G.C...AGCUCUCCAUGUUUUc............................................AGC-GCCG.G..AGCCg.....GAUCAAAAAGGAGGAAGUG---...................CCGC.-AGGCCU.GCGGUGCGGCAGUGU.GGAG............AUCUGCCGUAaAGCCGUGCUGU-.............UUUA--.......................................................-ACAGC-CGGGAGGGAGCGUA-.UGCGGGG........GCA...GCGCUU.CCAGGGCCCCG...uUGCCAUGGCA AUAUUGCGGCUG.A.C...CUUACUCCACAAAAA.............................................UAAGUUCA.G..GC--......GCAAAAAAGAAAGGAGUAUUA-...................CCGC.AUGGCUC.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGUA.AUGCGAAUAUA-.............GCAACAcaacucua...............................................-UAUG-UCGCGAGGCAUUCAG-.AGCGGAG........GCU...UGAUUG.CCAGAGCCAGU....CAAGAUGGCA AGGAGCAGCCCG.U.U...GCCACUCCACUUUUC.............................................UGGCG-CG.G..GGG-......CAAAAAAAAGGAGGUUUAAUUUaaac...............CCGUuGCGGUUU.ACGGUGCGGCAUUGU.GGAG............ACAUGCCGUA.AGGCGGCCAUG-.............AAGUAAucg....................................................-CGUGGCGGCGAGGGAAGCGGCa-GGCGAG........CCCug.CGUUUU.UCAAAACCGGU....CAAAAUGGCA UCCGGUGGAACG.U.G...CCUACUCCACUUUA-.............................................UAGUCCCG.U..UCCGc.....UGCAAUAAAGGAGAAUACGC--...................CCGC.GUGACUC.GCGGUGCGGCAGUGU.GGAG............ACCUGCCGCA.AUGGGCACGGGA.............UACCGCu......................................................UCCCGCGUCCGAGCCGGCCGGUuGGAGGAU........UCCg..CGGCCG.GCAGAGUCGGA..acAAGCAUGGCA GAAAAGCCUGCA.U.A...UGCUCUCCAUCUCUC.............................................AGC-UGUG.C..GGG-......UGCCAAAAAGGAGGAAAUACAUa..................CCGGuACGGCUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUUGUA.AAGCGCGGCGCC.............CAUCGC.......................................................GGUACCGCGUGAGAACGCAUC-.CGCGGAG........GCG...GAGCGG.UCAGAGCCGGG....AAAGAUGGCA GAAAAGCCUGCA.U.A...UGCUCUCCAUCUCUC.............................................AGC-UGUG.C..GGG-......UGCCAAAAAGGAGGAAAUACAUa..................CCGGuACGGCUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUUGUA.AAGCGCGGCGCC.............CAUUGC.......................................................GGUACCGCGUGAGAACGCAUC-.CGCGGAG........GCG...GAGCGG.UCAGAGCCGGG....AAAGAUGGCA GAAAAGCCUGCA.U.A...UGCUCUCCAUCUCUC.............................................AGC-UGUG.C..GGG-......UGCCAAAAAGGAGGAAAUACAUac.................CGGU.ACGGCUC.ACGGUGCGGCAGUGU.GGAG............ACCUGUUGUA.AAGCGCGGCGCC.............CAUUGC.......................................................GGUACCGCGUGAGAACGUAUC-.CGCGGAG........GCG...GAGCGG.UCAGAGCCGGG....AAAGAUGGCA GAUCAGGCCGGC.A.G...CCUACUCCAUUCUUA.............................................UAGUCUGU.C..AGGCua....AUAAAGUAAGGAGGACCAAAUAu..................CCGC.GCGGCUU.GCGGUACAGCAGUGU.GGAG............ACCUGCUGCA.ACGUCCGCGGAG.............UUCCGCu......................................................CUCCGCGGGCAAGGGGUCACA-.GGCAGAG........GCC...GUGACA.CCAAAGCCGAU....CACUAUGGCG UAAUAUGCACAG.G.A...AUUACUCCACUUCC-.............................................UAAUUCCU.G..CGACag....AAAAGAAAAGGAGGAUCAU---...................CCGC.-UAACUA.GCGGUGCAGCAUUGU.GGAG............ACAUGCUGUA.AUGCGUCGGACA.............UUUUACc......................................................UGUCCCUCGCGAGGCGGGCAGUuGAAGAAU........UUCg..UGCCCG.UCAUAGUUCAG....AAGAAUGGCA UACAUAGCGUGU.G.C...GGUUCUCCUGACUGAuc...........................................UGCCGUAC.A..CAGC......UUAAAAGAAGGAGGUUCAGUCUuu.................CCCC.--UGCUU.GGGGUGCAGCAUUGU.GGAG............ACGUGCUGUA.AUGCGGCGAUC-.............CCAG--.......................................................-GAUC-CCGCGAGAGUCCCGAU.UGCGGAG........GCA...CGGGGC.CCGAAGCAAGU....--AUAUGGCA CAAUACGAGGCC.G.U...GCGACUCCACGAUAU.............................................UCGCAGGG.C..AAGCg.....UAAAAUAAAGGAGGCAUACGCAggac...............CCGC.CGGGCUU.GCGGUGCGGCAGCGU.GGAG............ACCUGUCGCA.AAGCCAUCGCC-.............GCCAAGcg.....................................................-GGCGCUGGCGAGCUGUGCAGCgAGCGAAG........GCU..gUGCAUG.GCAGAGCCGAA....-CAUAUGGCA AAAAACGGUCCC.G.G...ACGACUCUACAUUUU.............................................UCGUUCGG.C..AUCCg.....UAAUGGAAAGGAGAGUAAUCAUcac................CCGUaUCGGCUC.GCGGUGCAGCAGCGU.GGAG............ACCUGUUGUA.AAACCUUCGCUC.............CCAGGGc......................................................GGGCGUUGGUGAGUCGCGCUGUuAGCAAAA........GCAg..GGCGUG.GCAGAGCCGG-....CGAUAUGGCG AAAUACGGCCCC.G.G...ACGACUCUACAUUAU.............................................UCGUUCGG.U..AUCCg.....UAAUGGAAAGGAGAGUAAUCAUcac................CCGUaUCGGCUC.GCGGUGCAGCAGUGU.GGAG............ACCUGUUGUA.AUACUUUCUGCCu............UCAAUGc.....................................................aGGC-GUAAGUGAGCCGCGCCAUuAGCAAA-........GCUg..GGCGCA.GCAGAGCCGG-....GGAUAUGGCA AACUGCGAUACC.G.G...ACGACUCCACUUUUC.............................................UCGUCCGG.C..AGCGc.....UAAUAAAAAGGAGGCGUGUUUUuu.................CCGUaUCGGCUU.GCGGUACAGCAGUGU.GGAG............ACCUGCUGUA.AUGCCACGGCC-.............ACAUAAgcg....................................................-GGCGGUGGCGAGCUGCGCAGUuAGCAGAU........GCUg..UGCGCG.GUAAAGCCGUG....GUAUAUGGCA -AAUACGGUGCC.A.G...ACGACUCUACAUUAU.............................................UCGUUUGG.C..AGA-......CGUAAAAAAGGAGGCAACAAUUaac................CCGUaUCGGCUC.GCGGUGCAGCAGUGU.GGAG............ACCUGUUGUA.AUACCUUCGUC-.............ACAUAUgcg....................................................-GGCGUCGGUGAGCUGCGCAGUuAGCGGAU........GCUg..UGCGCG.GCAGAGUCGGA....-GAUAUGGCA -AAUACGGUGCC.A.G...ACGACUCUACAUUAU.............................................UCGUUUGG.C..AGA-......CGUAAAAAAGGAGGCAACAAUUaac................CCGUaUCGGCUC.GCGGUGCAGCAGUGU.GGAG............ACCUGUUGUA.AUGCCUUCGUC-.............ACAUAUgcg....................................................-GGCGUCGGUGAGCUGCGCAGUuAGCGGAU........GCUg..UGCGCG.GCAGAGUCGGA....-GAUAUGGCA