Rfam: Seed sequence alignment for RF03064

URS0000D6A0FC_12908/1-83 unclassified sequences 0.0 URS0000D6C849_1316587/1-67 Fusobacterium nucleatum CTI-6 0.0 URS0000D6A723_12908/1-67 unclassified sequences 0.0 URS0000D664B7_1216362/1-67 Fusobacterium hwasookii ChDC F128 0.0 URS0000D65B1F_12908/1-67 unclassified sequences 0.0 URS0000D65EC1_12908/1-67 unclassified sequences 0.0 URS0000D69E09_12908/1-67 unclassified sequences 0.0 URS0000D69E09_1316587/1-67 Fusobacterium nucleatum CTI-6 0.0 URS0000D69E09_393480/1-67 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 0.0 URS0000D669FF_12908/1-67 unclassified sequences 0.0 URS0000D686B5_12908/1-68 unclassified sequences 0.0 URS0000D69DF2_12908/1-67 unclassified sequences 0.0 URS0000D68ED8_12908/1-67 unclassified sequences 0.0 URS0000D6B1DE_12908/1-67 unclassified sequences 0.0 URS0000D6D001_12908/1-67 unclassified sequences 0.0 URS0000D6607F_12908/1-73 unclassified sequences 0.0 URS0000D69861_1262888/1-74 Eubacterium sp. CAG:274 0.0 URS0000D672A8_12908/1-74 unclassified sequences 0.0 URS0000D6B963_12908/1-74 unclassified sequences 0.0 URS0000D66569_1263010/1-76 Firmicutes bacterium CAG:227 0.0 URS0000D6CF3E_12908/1-72 unclassified sequences 0.0 URS0000D68A42_12908/1-72 unclassified sequences 0.0 URS0000D686D7_12908/1-74 unclassified sequences 0.0 URS0000D6C457_12908/1-73 unclassified sequences 0.0 URS0000D665A8_12908/1-74 unclassified sequences 0.0 URS0000D6B560_12908/1-79 unclassified sequences 0.0 URS0000D69EFF_12908/1-74 unclassified sequences 0.0 URS0000D6C26E_12908/1-75 unclassified sequences 0.0 URS0000D6868A_12908/1-74 unclassified sequences 0.0 URS0000D6868A_1262951/1-74 Ruminococcus sp. CAG:17 0.0

ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACUaag...a........UACAUaga...........u..acaaAGu...AUU.GAAAAUA.UACUC.AAUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACA...............-U---.....................UGu...AUU.GAAAGUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACA...............-U---.....................UGu...AUU.GAAAGUA.UACUC.GCUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAU...............................UAUGAGU.AGAU.-ACA...............-U---.....................UGu...AUU.GAAAAUA.UACUC.AUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACA...............U----.....................UGu...AUU.GAAAGUA.UAUUC.AUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACA...............U----.....................UGu...AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACA...............U----.....................UGu...AUU.GAAAAUA.UACUC.AUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACA...............U----.....................UGu...AUU.GAAAAUA.UACUC.AUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACA...............U----.....................UGu...AUU.GAAAAUA.UACUC.AUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACA...............U----.....................UGu...AUU.GAAAAUA.UACUC.AUUGA.AAUAGUAA ACUAU.GGAGAGUA.CAAGGAAU...............................UAUGAGU.AGAU.-ACA...............-U---.....................UGu...AUUgAAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACA...............-U---.....................UGu...AUU.GAAAGUA.UGUUA.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-A--...............CCAAGu....................--....AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGAAAC...............................UAUGAGU.AGAU.-A--...............CGAAGu....................--....AUU.GAAAGUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-A--...............CAAG-.....................--gu..AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUGU.GGACUAUA.CUAGAACU...............................UGUUAGU.AGCG.-AAU...............UACUUgua..................AU....CGC.CAAAGCA.UAUAG.AAUGA.AACAGUAA CCUAU.GGAGAGUA.UACAAAAU...............................UGUGAGU.AGAA.--AU...............GUUUCaau..................AUu...UUC.AAAAACA.UACUCuAAUGA.AGUAGGAA CCUAU.GGAGAGUA.UACAAAAU...............................UGUGAGU.AGAA.-AUG...............UUUCAa....................UGuu..UUC.AAAAACA.UACUCuAAUGA.AGUAGGAA ACUGU.GGAGUGUA.CAUGAAUC...............................UGCGAGU.AGUA.AAUC...............ACUUAgu...................GAu...UAC.CAAAGCA.UACAC.AUUGA.AGCAGUAA ACUGU.GGAGUGUA.CAAGAAUU...............................UACGAGU.AGAUaGAUA...............UUUUU.u...................-AuaucAUC.AAAAGUA.UACAC.GAUGA.AGCAGUAA ACUGU.GGAGUGUA.GAUGAACU...............................UGUAAGU.AGUA.UUGU...............-UUAU.....................ACag..UAC.CAAAGCA.UACAC.GAUGA.AGCAGUAA ACUGU.GGAGUGUA.GAAGACC-...............................UGUGAGU.AGAG.-AUAac.............CUUG-...................guUA....CUC.AAAAACA.UACAC.GUUGA.AACAGUAA UCUGU.GGAGAGUA.CAAAAAA-...............................UGUGAGU.AGUA.UCUA...............GAUUUauu..................UAg...UAC.GAAAGCA.UACUC.GAUGA.AANAAAUA UCUGU.GGAGAGUA.CAAAAA--...............................UGUGAGU.AGUA.UCUA...............GAUUCauu..................UAg...UAC.GAAAGCA.UACUC.UGUGA.AACAGAAA UCUGU.GGAGAGUA.CAAAAAA-...............................UGUGAGU.AGUA.UCUA...............GAUUUauu..................UAg...UAC.GAAAGCA.UACUC.UGUGA.AACAGAAA CCUAU.GGAGAGUA.UAAAAAAA..............................aUGUGAGU.AGUA.UUUAga.............UUUAUuau..................--ucaaUAC.AAAAACA.UACUC.GGCGA.AAUAGGAA ACUGU.GGAGUGUA.UAAAAAU-...............................UGUUAGU.AGUA.UCUG...............GCUUUauu..................CAg...UAC.AAACGCA.UACAC.AAUGA.AGCAGUAA CCUAU.GGAGUGUA.CAAGAACC...............................UGUAAGU.AGAU.-AUUgua............GAAA-..................uacAA....AUU.GAAAGCA.UACAC.AAUGA.AGUAGGAA ACUGU.GGAGUGUAcUUAGGAUC...............................UGUGAGU.AGAGaUAAC...............GCAA-.....................GUua..CUC.AAAAGCA.UACAC.GAAGA.AACAGUAA ACUGU.GGAGUGUAcUUAGGAUC...............................UGUGAGU.AGAGaUAAC...............GCAA-.....................GUua..CUC.AAAAGCA.UACAC.GAAGA.AACAGUAA