Rfam: Seed sequence alignment for RF03064

URS0000D6849A_12908/1-69 unclassified sequences 0.0 URS0000D69F8B_12908/1-66 unclassified sequences 0.0 URS0000D6B6A1_12908/1-66 unclassified sequences 0.0 URS0000D676A0_12908/1-75 unclassified sequences 0.0 URS0000D6BB62_12908/1-71 unclassified sequences 0.0 URS0000D6CD8C_12908/1-71 unclassified sequences 0.0 URS0000D657D3_12908/1-71 unclassified sequences 0.0 URS0000D65BC2_12908/1-73 unclassified sequences 0.0 URS0000D6AECA_12908/1-86 unclassified sequences 0.0 URS0000D6AE94_12908/1-67 unclassified sequences 0.0 URS0000D69C98_12908/1-69 unclassified sequences 0.0 URS0000D6AB07_12908/1-67 unclassified sequences 0.0 URS0000D6A167_12908/1-69 unclassified sequences 0.0 URS0000D6BA27_12908/1-69 unclassified sequences 0.0 URS0000D65DED_1316587/1-67 Fusobacterium nucleatum CTI-6 0.0 URS0000D65DED_393480/1-67 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 0.0 URS0000D6A015_1216362/1-67 Fusobacterium hwasookii ChDC F128 0.0 URS0000D67875_12908/1-67 unclassified sequences 0.0 URS0000D6BC8D_12908/1-67 unclassified sequences 0.0 URS0000D6BC8D_469599/1-67 Fusobacterium sp. 2_1_31 0.0 URS0000D6BC8D_861452/1-67 Fusobacterium sp. oral taxon 370 str. F0437 0.0 URS0000D6618A_12908/1-67 unclassified sequences 0.0 URS0000D67B3E_12908/1-67 unclassified sequences 0.0 URS0000D69426_12908/1-67 unclassified sequences 0.0 URS0000D65FCE_620833/1-67 Fusobacterium periodonticum D10 0.0 URS0000D66727_12908/1-75 unclassified sequences 0.0 URS0000D67250_12908/1-67 unclassified sequences 0.0 URS0000D67250_546275/1-67 Fusobacterium periodonticum ATCC 33693 0.0 URS0000D67250_469621/1-67 Fusobacterium sp. 1_1_41FAA 0.0 URS0000D6AEF2_12908/1-67 unclassified sequences 0.0

ACUGU.GGAGAGCA.AAAAGAA-...............................UACGAGU.AGAU.--AA...............UUUUUu....................UU....AUC.AAAAGUA.UGUUC.GAUGA.AGCAGUAA GCUGU.GGAGAGCA.AAACAAA-...............................UGCGAGU.AGAC.-A--...............UUUCAu....................--....GUC.AAAAGCA.UGUUC.GUUGA.AGCAGCAA GCUGU.GGAGAGCA.AAACAAA-...............................UAUGAGU.AGAU.-A-U...............UU-U-.....................AU....AUC.AAAAAUA.UGUUC.GUUGA.AACAGCAA CCUAC.GGAGAGUA.UAUAACAA...............................UGCAAGU.ACUG.UUUG...............GAGGUauc..................CAu...CAG.GAAAACA.UACUC.GAUGA.AGUAGGAA GCUGU.GGACUGUA.CAAGGACC...............................UGCAAGU.AGCG.-AUC...............CGAAA.....................GGa...UGC.AAAAGCA.UACAG.GAUGA.AGCAGCAA GCUGU.GGACUGUA.CAAGGACC...............................UGCGAGU.AGCA.-AUC...............CGAAA.....................GGa...UGC.AAAAGCA.UACAG.GAUGA.AGCAGCAA GCUGU.GGACUGUA.CAAGGACC...............................UGCGAGU.AGCA.-AUC...............CGAAA.....................GGa...UGC.GAAAGCA.UACAG.GAUGA.AGCAGCAA CCUUU.GGCGUGCA.CUAGAACU...............................UGUGAGU.AGCU.-GCU...............GAACUuuc..................AG....AGC.AAAAACA.UGCAC.GAUGA.AUAAGGAA CCUUU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.--AA.cuuaguu.......GUUAU.............aacuuag.UUguu.AUU.GAAAAUA.UACUC.AUUGA.AUAAGGAA ACUAU.GGAGAGUA.UAAGAAUU...............................UAUGAGU.AAAU.ACAA...............-----.....................UUu...AUU.GAAAGUA.UGCUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAUAACU...............................UAUGAGU.AAAU.--AC...............AUUUU.....................GU....AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGAACC...............................UAUGAGU.AGAUaCAAU...............-----.....................AU....AUU.GAAAAUA.UACUC.GUUGA.AAUAGUAA ACUAU.GGAGAGUA.CAAGGACC...............................UAUGAGU.AAAU.-AAC...............UUU--.....................GUu...AUU.GAAAAUA.UACUC.GUUGA.AAUAGUAA ACUAU.GGAGAGUA.CAAGGACC...............................UAUGAGU.AGAU.-AAC...............UUC--.....................GUu...AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-A-C...............UAU--.....................GU....AUU.GAAAGUA.UGCUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-A-C...............UAU--.....................GU....AUU.GAAAGUA.UGCUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-A-C...............UAU--.....................GU....AUU.GAAAGUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.--AC...............AAA--.....................GU....AUU.GAAAAUA.UACUC.GAUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.--AC...............AAA--.....................GU....AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.--AC...............AAA--.....................GU....AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.--AC...............AAA--.....................GU....AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.--AC...............AAA--.....................GU....AUU.GAAAGUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.--AC...............AAA--.....................GU....AUU.GAAAAUA.UACUC.GUUGA.AAUAGUAA ACUAU.GGAGAGUA.UAAGGAAC...............................UAUGAGU.AGAU.-ACU...............A----.....................AGu...AUU.GAAAAUA.UACUC.GUUGA.AAUAGUAA ACUAU.GGAGAGUA.CAAGAAAC...............................UAUGAGU.AGAU.-ACU...............A----.....................AGu...AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACUaag............AUA--..................cauAGu...AUC.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACU...............A----.....................AGu...AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACU...............A----.....................AGu...AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACU...............A----.....................AGu...AUU.GAAAAUA.UACUC.GUUGA.AGUAGUAA ACUAU.GGAGAGUA.CAAGGAAC...............................UAUGAGU.AGAU.-ACU...............A----.....................AGu...AUU.GAAAAUA.UACUC.GUUGA.AAUAGUAA