Rfam: Seed sequence alignment for RF03064

URS0000D68E59_12908/1-72 unclassified sequences 0.0 URS0000D6967E_1262780/1-72 Clostridium sp. CAG:221 0.0 URS0000D6967E_1262787/1-72 Clostridium sp. CAG:265 0.0 URS0000D6784B_12908/1-72 unclassified sequences 0.0 URS0000D6A9CF_12908/1-71 unclassified sequences 0.0 URS0000D667C3_12908/1-61 unclassified sequences 0.0 URS0000D67737_12908/1-61 unclassified sequences 0.0 URS0000D6B5E8_12908/1-61 unclassified sequences 0.0 URS0000D6D2C0_12908/1-61 unclassified sequences 0.0 URS0000D65FBE_12908/1-62 unclassified sequences 0.0 URS0000D6B3FB_12908/1-62 unclassified sequences 0.0 URS0000D683C2_12908/1-62 unclassified sequences 0.0 URS0000D6D16A_12908/1-62 unclassified sequences 0.0 URS0000D6642A_12908/1-62 unclassified sequences 0.0 URS0000D66C74_12908/1-62 unclassified sequences 0.0 URS0000D682D9_12908/1-62 unclassified sequences 0.0 URS0000D69BDE_12908/1-62 unclassified sequences 0.0 URS0000D65861_12908/1-62 unclassified sequences 0.0 URS0000D691E0_12908/1-61 unclassified sequences 0.0 URS0000D6AEBD_12908/1-62 unclassified sequences 0.0 URS0000D6ACAA_12908/1-62 unclassified sequences 0.0 URS0000D68DC9_12908/1-62 unclassified sequences 0.0 URS0000D6C9CD_12908/1-62 unclassified sequences 0.0 URS0000D6CEC2_12908/1-85 unclassified sequences 0.0 URS0000D67007_12908/1-85 unclassified sequences 0.0 URS0000D679CA_12908/1-85 unclassified sequences 0.0 URS0000D665F8_12908/1-85 unclassified sequences 0.0 URS0000D6C1B4_12908/1-85 unclassified sequences 0.0 URS0000D67BEA_12908/1-81 unclassified sequences 0.0 URS0000D6A9E9_12908/1-85 unclassified sequences 0.0

CCUAU.GGAGUGAU.ACAUCAAA...............................CUAAAGU.AGCU.UAUG...............UUUAU.....................CAu...AGC.AAAAUAG.GUCAC.GUUGA.AAUAGGAA CCUUU.GGAGUGUC.AUAUCAAA...............................CUAAAGU.AGUC.UAUG...............UUUAU.....................CAa...GAC.AAAAUAG.GACAC.GUUGA.AUAAGGAA CCUUU.GGAGUGUC.AUAUCAAA...............................CUAAAGU.AGUC.UAUG...............UUUAU.....................CAa...GAC.AAAAUAG.GACAC.GUUGA.AUAAGGAA CCUUU.GGAGUGAU.AUAUCAAA...............................CUAAAGU.AGUC.UAUG...............UUUAU.....................CAa...GAC.AAAAUAG.GUCAC.GUUGA.AAAAGGAA CCUUU.GGAGUGUU.AUACAAA-...............................CUAAAGU.AGUC.UAUG...............UUUAU.....................CAa...GAC.AAAAUAG.GACAC.AUUGA.AUAAGGAA CUUGC.GGAGAGUU.AUAUAAA-...............................CGAAAGU.AGCU.----...............AA---.....................--....GGC.GAAAUCG.GACUC.AAAGA.AACAAGAA CUUGC.GGAGAGUU.AUAUAAA-...............................CGAAAAU.AGCU.U---...............AU---.....................--....-GU.GAAAUCG.GACUC.GAAGA.AACAAGAA CUUGC.GGAGAGUU.AUAUAAA-...............................CGAAAGU.AGCU.U---...............A----.....................--....UGC.AAAAUCG.GACUC.GAAGA.AACAAGAA GCUGU.GGAGCGUU.ACACAAA-...............................CCGGAGU.AGCU.U---...............C----.....................--....GGC.AAAACGG.GACGC.UGUGA.AGCAGUAA UCUGU.GGAGUGCC.ACAUCAAA...............................CUGGAGU.AGCU.----...............AC---.....................--....GGC.UAAACAG.GGUAC.GAUGA.AGCAGAAA UCUGU.GGAGUGUC.ACAUCAAA...............................CUGCGGU.AGUU.----...............UC---.....................--....GAC.GAAACAG.GACAC.GAAGA.AGCAGAAA UCUGU.GGAGUGUC.GUAUCAAA...............................CUGCGGU.AGUU.----...............UC---.....................--....GAC.GAAACAG.GACAC.GAUGA.AGCAGAAA UCUGU.GGAGUGCC.ACAUCAAA...............................CUGCGGU.AGUU.U---...............C----.....................--....GAC.GAAACAG.GGCAC.GAUGA.AGCAGAAA UCUGU.GGAGUGUC.ACAUCAAA...............................CUGUGGU.AGUU.U---...............C----.....................--....GAC.GAAACAG.GGCAC.GAAGA.AGCAGAAA UCUGU.GGAGUGUC.ACAUCAAA...............................CUGCGGU.AGUU.U---...............C----.....................--....GAC.GAAACAG.GGCAC.GAAGA.AGCAGAAA UCUGU.GGAGUGCU.ACAUCAAA...............................CUGCGGU.AGUU.U---...............C----.....................--....GAC.AAAACAG.GGCAC.GAAGA.AGCAGAAA UCUGU.GGAGUGUU.ACAUCAAA...............................CUGCGGU.AGUU.U---...............C----.....................--....GAC.AAAACAG.GGCAC.GAAGA.AGCAGAAA UCUGU.GGAGUGUC.ACAUCAAA...............................CUGAAGU.AGUU.U---...............C----.....................--....GAC.GAAACAG.GACAC.GAUGA.AACAGAAA UCUGU.GGAGCGUU.ACAUCAAA...............................CCGAAGU.AGCU.----...............C----.....................--....GGC.AAAACGG.GACGC.GAUGA.AGCAGAAA UCUGU.GGAGCGUU.ACAUCAAA...............................CCGAAGU.AGCU.----...............UC---.....................--....GGC.GAAACGG.GACGC.GAUGA.AGCAGAAA UCUGU.GGAGCGUU.ACAUCAAA...............................CCGAAGU.AGCU.----...............UC---.....................--....GGC.AAAACGG.GACGC.GAUGA.AGCAGAAA UCUGU.GGAGUGUU.ACAUCAAA...............................CUGAAGU.AGCU.----...............UC---.....................--....GGC.AAAACAG.GGCAC.GAAGA.AGCAGAAA UCUGU.GGAGUGUU.AUAUCAAA...............................CUGAAGU.AGCC.U---...............U----.....................--....GGC.AAAACAG.GACAC.GAUGA.AGCAGAAA UCUGU.GGAUCGUU.ACAGCAAA...............................UGAGAGU.AGCU.-AGUgauauug........GGUAUu.............uggugucAU....GGU.AAAAUCA.GACGG.GAGGA.AGCAGAAA UCUGU.GGAUCGUU.AUAUCAAA...............................UGAGAGU.AGCU.AGUGauauuga........GUAU-..............uugguauUAg...GGC.AAAAUCA.GACGG.AAGGA.AGCAGAAA UCUGU.GGAUCGUU.AUAUUAAA...............................UGAAAGU.AGUU.--AGuaacaau........GAGUA..............auuguugUUag..AAC.GAAAUCA.GACGG.GGUGA.AGCAGAAA UCUGU.GGAUCGUU.AUAUCAAA...............................UGAAAGU.AGUU.--AGuaacaau........GAGUG..............auuguugUUag..AAC.GAAAUCA.GACGG.AAUGA.AGCAGAAA UCUGU.GGAUCGUU.AUAGCAAA...............................UGAGAGU.AGUU.AGUG.auauu.........CAGUAuuu............ggugu.CAu...GAC.AAAAUCA.GACGG.GAUGA.AGCAGAAA UCUGU.GAAUCGUU.ACAUCAAA...............................UGAAAGU.AGUU.-UGUaaua...........CAAAGuga...........ua...uuAC....GAC.AAAAUCA.GACGG.GAUGA.AACAGAAA UCUGU.GAAUCGUU.ACAUCAAA...............................UGAAAGU.AGUU.-CGUaauaauga.......GAAA-.............ucuaaguuAC....AAC.AAAAUCA.GACGG.GAUGA.AGCAGAAA