Rfam: Seed sequence alignment for RF03064

URS0000D6A86C_12908/1-96 unclassified sequences 0.0 URS0000D678A5_12908/1-81 unclassified sequences 0.0 URS0000D66CF6_12908/1-64 unclassified sequences 0.0 URS0000D6939D_12908/1-64 unclassified sequences 0.0 URS0000D66902_12908/1-63 unclassified sequences 0.0 URS0000D6B576_12908/1-98 unclassified sequences 0.0 URS0000D699B2_12908/1-77 unclassified sequences 0.0 URS0000D66F3E_12908/1-77 unclassified sequences 0.0 URS0000D66F6E_12908/1-77 unclassified sequences 0.0 URS0000D69501_1262780/1-74 Clostridium sp. CAG:221 0.0 URS0000D669EF_445334/1-74 Clostridium perfringens C str. JGS1495 0.0 URS0000D669EF_195102/1-74 Clostridium perfringens str. 13 0.0 URS0000D66B0F_445334/1-74 Clostridium perfringens C str. JGS1495 0.0 URS0000D67C61_742739/1-74 Clostridium perfringens WAL-14572 0.0 URS0000D66044_195102/1-74 Clostridium perfringens str. 13 0.0 URS0000D661A1_451755/1-74 Clostridium perfringens E str. JGS1987 0.0 URS0000D6CCAC_12908/1-75 unclassified sequences 0.0 URS0000D657F0_289380/1-74 Clostridium perfringens SM101 0.0 URS0000D6C075_445334/1-74 Clostridium perfringens C str. JGS1495 0.0 URS0000D6A9A2_195102/1-74 Clostridium perfringens str. 13 0.0 URS0000D68A1F_195102/1-74 Clostridium perfringens str. 13 0.0 URS0000D68A1F_451755/1-74 Clostridium perfringens E str. JGS1987 0.0 URS0000D68A1F_289380/1-74 Clostridium perfringens SM101 0.0 URS0000D697D7_742739/1-74 Clostridium perfringens WAL-14572 0.0 URS0000D6BEE6_451757/1-74 Clostridium perfringens NCTC 8239 0.0 URS0000D6C02C_289380/1-74 Clostridium perfringens SM101 0.0 URS0000D6CBC4_445334/1-74 Clostridium perfringens C str. JGS1495 0.0 URS0000D69AE9_445334/1-73 Clostridium perfringens C str. JGS1495 0.0 URS0000D69AE9_289380/1-73 Clostridium perfringens SM101 0.0 URS0000D6818E_289380/1-73 Clostridium perfringens SM101 0.0

CCUGU.GGAUCGUU.ACAUAAA-...............................CGAAAGU.AGUU.-UUAacgaauauguuug..AGUCU........caaauaucaacguUAa...AAC.AAAAUCG.GACGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.AUACAAA-...............................CGAAAGU.AGUU.--GG.aaugaa........AAUAUa.............uucauu.UU....AAC.AAAAUCG.GACGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.AUAUAAA-...............................CGAAAGU.AGUU.U---...............UUUA-.....................--....AAC.GAAAUCG.GACGG.GAUGA.AGCAGGAA CCUGU.GGACCGUU.AUACAAA-...............................CGAAAGU.AGUU.U---...............UUUA-.....................--....AAC.GAAAUUG.GAUGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.AUACAAA-...............................CGAAAGU.AGUU.UU--...............UU---.....................--....AAC.AAAAUCG.GACGG.GAUGA.AGUAGGAA CCUGU.GGAUCGUU.ACAUAAA-...............................CGAAAGU.AGUU.UUAAaugaagauauuu...AAAUCcc.......aaauauugacauUUuu..AAC.AAAAUCG.AACGG.GAUGA.AGCAGGAA CUUGU.GGAUCGUU.AUACAAA-...............................CGAAAGU.AGUU.UGAAau..a..........GAUU-................u..auUUcu..AAC.GAAAUCG.GACGA.GAUGA.AGCAAGAA CUUGU.GGAUCGUU.AUACAAA-...............................CGAAAGU.AGUU.UGAAa..............UACAUuua.................uUUcu..GAC.GAAAUCG.GACGA.GAUGA.AGCAAGAA CUUGU.GGAUCGUU.AUACAAA-...............................CGAAAGU.AGUU.UGAAaua............AACC-..................uauUUcu..GAC.GAAAUCG.GACGG.GAUGA.AGCAAGAA CCCUU.GGAGAGUU.AUAUCAAA...............................CGAAAGU.AGAU.UGCU...............AUAUAu....................AGuu..UUC.AAAAUCG.CACUC.GUGGA.ACAGGGAA CCCUU.GGAGAGUU.GUAAGAAA...............................UGAAAGU.AGAU.UACU...............CGGUAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUU.GGAGAGUU.GUAAGAAA...............................UGAAAGU.AGAU.UACU...............CGGUAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.GGAGAGUU.AUACCAAA...............................GGAAAGU.AGAU.UACU...............AUUUAu....................AGuc..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.GGAGAGUU.AUACCAAA...............................GGAAAGU.AGAU.UACU...............AUUUAu....................AGuu..UUC.AAAAUCG.GACUC.GUAGA.ACAGGGAA CCCUC.UGAAAGUU.AUAUAAAA...............................GGAAAGU.AGAA.UCCU...............AUUUAu....................AGuu..UUC.AAGAUCU.GACUC.GUAGA.ACAGGGAA CCCUU.GGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAA.UACU...............AUUCAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUCuGGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAA.UACU...............AUUCAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.UGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAA.UACU...............AUUCAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.UGAGAGUU.AUAUAAAA...............................GGAAAGU.AGAA.UCCU...............AUUUAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.UGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAA.UCCU...............AUUUAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.UGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAA.UCCU...............AUUCAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.UGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAA.UCCU...............AUUCAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.UGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAA.UCCU...............AUUCAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.GGAGAGUU.AUAAGAAA...............................GGAAAGU.AGAU.UACU...............AUUUAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUU.GGAGAGUU.AUAUCAAA...............................UGAAAGU.AGAU.UACU...............AUUUAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.GGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAU.UACU...............AUUUAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.AAAGGGAA CCCUC.GGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAU.UACU...............AUUUAu....................AGuu..UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA CCCUC.GGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAU.UACU...............AUUAU.....................AGuu..UUC.AAAAUCG.GACUC.GUAGA.ACAGGGAA CCCUC.GGAGAGUU.AUAUCAAA...............................GGAAAGU.AGAU.UACU...............AUUAU.....................AGuu..UUC.AAAAUCG.GACUC.GUAGA.ACAGGGAA CCAUC.GAAGAGUU.GUAUCAAA...............................GGAAAUU.AGAU.UACU...............AUUAU.....................AGuu..UUC.AAAAUCG.GACUC.GUAGA.ACAGGGAA