Rfam: Seed sequence alignment for RF03064

URS0000D6C833_1053221/1-62 Bacillus cereus MSX-A12 0.0 URS0000D68AFF_545243/1-62 Clostridium sp. SL206 0.0 URS0000D68503_1262449/1-62 Clostridium pasteurianum DSM 525 = ATCC 6013 0.0 URS0000D6C359_12908/1-64 unclassified sequences 0.0 URS0000D660E7_12908/1-62 unclassified sequences 0.0 URS0000D679A6_12908/1-100 unclassified sequences 0.0 URS0000D6B769_12908/1-63 unclassified sequences 0.0 URS0000D6B73A_12908/1-63 unclassified sequences 0.0 URS0000D6A7E6_12908/1-64 unclassified sequences 0.0 URS0000D657ED_12908/1-78 unclassified sequences 0.0 URS0000D67CF1_12908/1-86 unclassified sequences 0.0 URS0000D6B19B_12908/1-81 unclassified sequences 0.0 URS0000D6AB9E_12908/1-61 unclassified sequences 0.0 URS0000D69C02_12908/1-62 unclassified sequences 0.0 URS0000D6CD1D_12908/1-62 unclassified sequences 0.0 URS0000D66EB7_12908/1-61 unclassified sequences 0.0 URS0000D6B88C_12908/1-62 unclassified sequences 0.0 URS0000D6CA61_12908/1-62 unclassified sequences 0.0 URS0000D6A676_12908/1-78 unclassified sequences 0.0 URS0000D6C8F1_12908/1-78 unclassified sequences 0.0 URS0000D675F7_12908/1-78 unclassified sequences 0.0 URS0000D6CEF3_12908/1-78 unclassified sequences 0.0 URS0000D6AC8C_12908/1-78 unclassified sequences 0.0 URS0000D65866_12908/1-78 unclassified sequences 0.0 URS0000D6622E_12908/1-78 unclassified sequences 0.0 URS0000D69A5D_12908/1-79 unclassified sequences 0.0 URS0000D6A491_12908/1-96 unclassified sequences 0.0 URS0000D6C99E_12908/1-98 unclassified sequences 0.0 URS0000D698CF_12908/1-98 unclassified sequences 0.0 URS0000D6994E_12908/1-98 unclassified sequences 0.0

CCCUC.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.UU--...............-----.....................--....GGC.CAAAUCG.GACAC.GUAGA.ACAGGGAA CCCUA.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGC-.----...............UCAU-.....................--....-GC.AAAAUCG.GACAC.GUUGA.ACAGGGAA CCCUU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.UC--...............-----.....................--....GGC.AAAAUCG.GACAC.GUUGA.AUAGGGAA CCCUA.GGAGUGUU.AUAACAAA...............................CGAAAGU.AGCU.--AU...............-----.....................AU....AGC.AAAAUCG.GACAC.GUUGA.ACAGGGAA CCUGU.GGAGCGUU.ACACCAAA...............................UGCAAGU.AGCU.-A--...............C----.....................--....GGC.AAACGCA.GACGC.UUUGA.AACAGGAA CCUUU.GGAGUGUC.AUAUCAAA...............................CGAAAGU.AGCCaUGCC...ua.gcauccuuuGAAAG......aaaggauguauaaauGGua..AAC.CAAAUCG.GACAC.GAUGA.AUAAGGAA CCCUC.AGAGUGUU.AUAAGAAA...............................CCAAAGU.AGCU.U---...............UU---.....................--....AGC.AAAAUGG.GACAC.GUUGA.ACAGGGAA CCCUC.GGACUGCU.AUAUCAAA...............................CCAAAGU.AGCU.U---...............UA---.....................--....AGC.AAAAUGG.AGUAG.GUUGA.ACAGGGAA CCCUC.GGACUAUU.AUAUCAAA...............................CCAAAGU.AGCU.UU--...............AU---.....................--....AGC.AAAAUGG.GAUAG.GUUGA.ACAGGGAA CCUGU.GGAUCGUC.AUACAAG-...............................CGAAAGU.AGUC.UAAA.........gacg..AAUG-........cguc.........UUu...GAC.AAAAUCG.GACGG.GAUGA.AGCAGGAA CCUUU.GGAGCGUU.AUACCAAA...............................CGAGAGU.AGUU.UUGUgaacgagc.......GUAA-.............gugagugaAC....AGC.AAAAUCG.GACGC.GAUGA.AUUAGGAA CCUGU.GGAUCGUU.ACAUAAA-...............................CGAAAGU.AGUU.GAAAcg..aaa........ACAU-..............uuuu..gUUuu..AAC.AAAAUCG.GACGG.GAUGA.AACAGGAA CUUGU.GGAGAGUU.GUACAAA-...............................CGAAAGU.AGUU.-A--...............A----.....................--....GAC.GAAAUCG.AACUC.GUUGA.AUCAAGAA CUUGU.GGAGAGUU.AUACAAA-...............................CGAAAGU.AGUU.-A--...............A----.....................--....GAC.GAAAUCG.AACUCgUUUGA.AACAAGAA CUUGU.GGAGAGUU.AUACAAA-...............................CGAAAGU.AGUU.-A--...............A----.....................--....GAC.GAAAUCG.AACUCgUUUGA.AGCAAGAA CUUGU.GGAGAGUU.AUACAAA-...............................CGAAAGU.AGUU.-A--...............A----.....................--....GAC.GAAAUCG.AACUC.GUUGA.AGCAAGAA CUUGU.GGAGAGUU.AUAUCAAA...............................CGAAAGU.AGUC.C---...............A----.....................--....GAC.GAAAUCG.GAUUC.GUUGA.AGCAAGAA CUUGU.GGAGAGUU.AUAUCAAA...............................CGAAAGU.AGUU.----...............CA---.....................--....GAC.GAAAUCG.GACUC.GUUGA.AACAAGAA CCUGU.GGAUCGUU.AUACAAA-...............................CGAGAGU.AGUC.UAAA...gacg........AAUA-..............uguc...UUu...AAU.AAAAUCG.GACGG.GAUGA.AAUAGGAA CCUGU.GGAUCGUC.AUACAAG-...............................CGAAAGU.AGUC.UAAA...gacg........AAUG-..............cgucuuu--....GAC.AAAAUCG.GACGG.GAUGA.AACAGGAA CCUGU.GGAUCGUU.AUACAAA-...............................CGAAAGU.AAUC.UAAA...gaug........AAUA-..............cauc...UUu...GAU.AAAAUCG.GACGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.AUACAAA-...............................CGAAAGU.AGUC.UAAA...gacg........AAUG-..............cgucuuu--....GAU.AAAAUCG.GACGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.ACACAAA-...............................CGAAAGU.AGUC.UAAA...gacg........AAUA-..............cguc...UUu...UAC.AAAAUCG.GACGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.ACACAAA-...............................CGAAAGU.AGUC.UAAA...ggcg........AAUA-..............cgucu..-Uu...GAC.AAAAUCG.GACGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.AUACAAA-...............................CGAAAGU.AGUC.UAAA...gacg........AAUA-..............cgucu..-Uu...GAU.AAAAUCG.GACGG.GAUGA.AGCAGGAA CCUGU.GGACCGUU.ACACAAA-...............................CGAAAGU.AGUC.UAAAggcg...........AAUA-.................cguuUUuu..GAC.AAAAUCG.GAUGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.ACAUAAA-...............................CGAAAGU.AGUUuUAACgaagauauuug....AGUCU..........caaauauugacGUu.uuAAC.AAAAUCG.GACGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.ACAUAAA-...............................CGAAAGU.AGUU.UUAAacguuaauauuug..AGUCU........caaauauuaacguUUuu..AAC.AAAAUUG.GACGG.GAUGA.AGCAGGAA CCUGU.GGAUCGUU.ACAUAAA-...............................CGAAAGU.AGUU.UUAAacgaagauauuug..AGUCU........caaguauuaacguUUuu..AAC.AAAAUCG.AACGG.AAUGA.AGCAGGAA CCUGU.GGAUCGUU.AUAUAAA-...............................CGAAAGU.AGUU.CUAAacgaagauauuug..AGUCU........caaauauuaacguUUuu..AAC.AAAAUCG.GACGG.GAUGA.AGCAGGAA