Rfam: Seed sequence alignment for RF03064

URS0000D6597E_12908/1-61 unclassified sequences 0.0 URS0000D6AEBF_12908/1-62 unclassified sequences 0.0 URS0000D6885B_12908/1-62 unclassified sequences 0.0 URS0000D6941D_699184/1-62 Bacillus cereus SJ1 0.0 URS0000D67CB6_1053184/1-62 Bacillus cereus BAG3X2-2 0.0 URS0000D67CB6_1053238/1-62 Bacillus cereus VD154 0.0 URS0000D67CB6_1053243/1-62 Bacillus cereus VD196 0.0 URS0000D67CB6_526977/1-62 Bacillus cereus ATCC 4342 0.0 URS0000D67CB6_526989/1-62 Bacillus cereus F65185 0.0 URS0000D67CB6_1053191/1-62 Bacillus cereus BAG5X2-1 0.0 URS0000D67CB6_1053178/1-62 Bacillus cereus BAG2O-3 0.0 URS0000D67CB6_526974/1-62 Bacillus cereus BDRD-ST24 0.0 URS0000D65C27_12908/1-70 unclassified sequences 0.0 URS0000D67EBC_86416/1-62 Clostridium pasteurianum BC1 0.0 URS0000D6AA52_12908/1-62 unclassified sequences 0.0 URS0000D6B5E6_444177/1-62 Lysinibacillus sphaericus C3-41 0.0 URS0000D68ACE_526981/1-62 Bacillus cereus Rock1-3 0.0 URS0000D68ACE_526974/1-62 Bacillus cereus BDRD-ST24 0.0 URS0000D66725_1053244/1-62 Bacillus cereus VD200 0.0 URS0000D65DC0_12908/1-64 unclassified sequences 0.0 URS0000D6B2EC_345219/1-62 Bacillus coagulans 36D1 0.0 URS0000D6C0D8_12908/1-62 unclassified sequences 0.0 URS0000D66F10_1053243/1-62 Bacillus cereus VD196 0.0 URS0000D66F10_1053244/1-62 Bacillus cereus VD200 0.0 URS0000D660F2_1053244/1-62 Bacillus cereus VD200 0.0 URS0000D6B01A_1053243/1-63 Bacillus cereus VD196 0.0 URS0000D6CFD1_1053244/1-63 Bacillus cereus VD200 0.0 URS0000D68758_1053233/1-62 Bacillus cereus VD133 0.0 URS0000D6B6F5_1053196/1-62 Bacillus cereus BMG1.7 0.0 URS0000D6AD56_526975/1-62 Bacillus cereus BDRD-ST26 0.0

CCUGU.GGAGUGUU.ACACCAAA...............................CGCAAGU.AGCU.----...............C----.....................--....GGC.AAAAGCG.GACAC.GUUGA.AGCAGGAA CCUGU.GGAGUGUU.ACACCAAA...............................CGCAAGU.AGCU.----...............CA---.....................--....GGC.AAAAGCG.GACAC.GUUGA.AGCAGGAA CCUGU.GGAGUGUC.ACAGCAAA...............................CGCAAGU.AGCU.----...............UC---.....................--....GGC.AAAAGCG.GACAC.GAUGA.AGCAGAAA CCCUC.GGAGUGUU.AGAUCAAA...............................CGAAAGU.AGC-.----...............UUCU-.....................--....-GC.GAAAUCG.GACAC.UUAGA.ACAGGGAA CCCUC.GGAGUGUU.ACAUCAAA...............................CGAAAGU.AGC-.----...............UUCU-.....................--....-GU.GAAAUCG.GACAC.GUAGA.ACAGGGAA CCCUC.GGAGUGUU.ACAUCAAA...............................CGAAAGU.AGC-.----...............UUCU-.....................--....-GU.GAAAUCG.GACAC.GUAGA.ACAGGGAA CCCUC.GGAGUGUU.ACAUCAAA...............................CGAAAGU.AGC-.----...............UUCU-.....................--....-GU.GAAAUCG.GACAC.GUAGA.ACAGGGAA CCCUC.GGAGUGUU.ACAUCAAA...............................CGAAAGU.AGC-.----...............UUCU-.....................--....-GU.GAAAUCG.GACAC.GUAGA.ACAGGGAA CCCUC.GGAGUGUU.ACAUCAAA...............................CGAAAGU.AGC-.----...............UUCU-.....................--....-GU.GAAAUCG.GACAC.GUAGA.ACAGGGAA CCCUC.GGAGUGUU.ACAUCAAA...............................CGAAAGU.AGC-.----...............UUCU-.....................--....-GU.GAAAUCG.GACAC.GUAGA.ACAGGGAA CCCUC.GGAGUGUU.ACAUCAAA...............................CGAAAGU.AGC-.----...............UUCU-.....................--....-GU.GAAAUCG.GACAC.GUAGA.ACAGGGAA CCCUC.GGAGUGUU.ACAUCAAA...............................CGAAAGU.AGC-.----...............UUCU-.....................--....-GU.GAAAUCG.GACAC.GUAGA.ACAGGGAA CCUUU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.--GU...............GUUAU.....................AUu...UGC.UAAAUCG.GACAC.GUCGA.AAAAGGAA CCUUU.AGAGUGUC.AUAUCAAA...............................CGAAAGU.AGCU.UA--...............-----.....................--....UGC.AAAAUCG.GACAC.GUUGA.AAAAGGAA CCUUC.GGAGUGUC.AUACCAAA...............................CGAAAGU.AGCU.UA--...............-----.....................--....UGC.AAAAUCG.GACAC.GUUGA.ACAAGGAA CCCUC.GGAGAGUU.AUAUCAAA...............................CCGUAGU.AGCU.----...............UU---.....................--....GGC.AAGGCGG.GACUC.GUUGA.ACAGGGAA CCCUC.GGAGAGUU.AUAUCAAA...............................CGGUAGU.AGCU.----...............UU---.....................--....GGC.AAAACCG.GACUC.GUAGA.ACAGGGAA CCCUC.GGAGAGUU.AUAUCAAA...............................CGGUAGU.AGCU.----...............UU---.....................--....GGC.AAAACCG.GACUC.GUAGA.ACAGGGAA CCCUU.GGAGAGUU.AUAUCAAA...............................CGGUAGU.AGCU.UU--...............-----.....................--....GGC.AAAACCG.GACUC.GUAGA.ACAGGGAA CCUUU.GGAGUGUU.AUAACAAA...............................CGAAAGU.AGCU.U---...............UAU--.....................--....AGC.AAAAUCG.GACAC.GUUGA.AUAAGGAA CCUUU.GGAGUGUU.AUGACAAA...............................CGAAAGU.AGCU.----...............UC---.....................--....GGC.AAAAUCG.GACAC.GAUGA.AGAAGGAA CCCCU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCC.UA--...............-----.....................--....GGC.AAAAUCG.GACAC.GAUGA.AUGGGGAA CCCUC.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.UC--...............-----.....................--....GGU.AAAAUCG.AACAC.GUAGA.ACAGGGAA CCCUC.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.UC--...............-----.....................--....GGU.AAAAUCG.AACAC.GUAGA.ACAGGGAA CCCUC.GGAGGGUU.AUAUCAAA...............................CGAAAGU.AGCU.UC--...............-----.....................--....GGU.AAAAUCG.AACAC.GUAGA.ACAGGGAA UCCUC.GGAGUGUUaUAAUCAAA...............................CGAAAGU.AGCU.UC--...............-----.....................--....GGU.AAAAUCG.AACAC.GUAGA.ACAGGGAA UCCUC.GGAGUAUUaUAAUCAAA...............................CGAAAGU.AGCU.UC--...............-----.....................--....GGU.AAAAUCG.AACAC.GUAGA.ACAGGGAA CCCUC.GGAGUGUU.ACAUCAAA...............................CGAAAAU.AGCU.UU--...............-----.....................--....GGU.AAAAUCG.GACAC.GUAGA.ACAGGGAA CCCUU.GGAGUGUU.AUGUCAAA...............................CGAAAGU.AGCU.----...............UC---.....................--....GGC.AAAAUCG.GACAC.GUAGA.GUAGGGAA CCCUC.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.----...............UC---.....................--....GGC.AAAAUCG.GACAC.GUAGA.ACAGGGAA