Rfam: Seed sequence alignment for RF03064

URS0000D6BF36_12908/1-63 unclassified sequences 0.0 URS0000D6AC64_12908/1-62 unclassified sequences 0.0 URS0000D6C295_12908/1-63 unclassified sequences 0.0 URS0000D67324_12908/1-62 unclassified sequences 0.0 URS0000D6C3B5_12908/1-61 unclassified sequences 0.0 URS0000D678FE_12908/1-61 unclassified sequences 0.0 URS0000D67BAC_12908/1-62 unclassified sequences 0.0 URS0000D674A4_12908/1-61 unclassified sequences 0.0 URS0000D67226_12908/1-62 unclassified sequences 0.0 URS0000D68D26_12908/1-62 unclassified sequences 0.0 URS0000D6C50C_12908/1-64 unclassified sequences 0.0 URS0000D6A38C_12908/1-60 unclassified sequences 0.0 URS0000D6AAF1_12908/1-63 unclassified sequences 0.0 URS0000D6C617_12908/1-62 unclassified sequences 0.0 URS0000D682B1_12908/1-62 unclassified sequences 0.0 URS0000D69189_12908/1-61 unclassified sequences 0.0 URS0000D6ABC1_12908/1-62 unclassified sequences 0.0 URS0000D6AB53_1354301/1-73 Clostridium sp. BL8 0.0 URS0000D69040_1262449/1-74 Clostridium pasteurianum DSM 525 = ATCC 6013 0.0 URS0000D6BADF_1345695/1-72 Clostridium saccharobutylicum DSM 13864 0.0 URS0000D66F7E_536227/1-74 Clostridium carboxidivorans P7 0.0 URS0000D65EBD_12908/1-62 unclassified sequences 0.0 URS0000D6A578_12908/1-62 unclassified sequences 0.0 URS0000D6CCC6_12908/1-62 unclassified sequences 0.0 URS0000D686E2_12908/1-62 unclassified sequences 0.0 URS0000D6B323_12908/1-64 unclassified sequences 0.0 URS0000D69745_1236905/1-62 Bacillus coagulans H-1 0.0 URS0000D6BBD9_526999/1-63 Bacillus mycoides Rock3-17 0.0 URS0000D667B1_1053181/1-62 Bacillus cereus BAG2X1-3 0.0 URS0000D6A408_1053212/1-62 Bacillus cereus HuB5-5 0.0

CCUGU.GGAGCGUC.ACAGCAAA...............................CGCGAGU.AGCU.AA--...............-----.....................--....GGCaAAAAGCG.GACGC.GGCGA.AGCAGGAA CCUGU.GGAGCGUC.ACAGCAAA...............................CGCGAGU.AGCU.AA--...............-----.....................--....GGC.AAAAGCG.GACGC.GGCGA.AGCAGGAA CCUGU.GGAGCGUC.ACAGCAAA...............................CGCGAGU.AGCU.AA--...............-----.....................--....GGCaAAAGGCG.GACGC.GGCGA.AGCAGGAA CCUGU.GGAGCGUC.ACAGCAAA...............................CGCGAGU.AGCU.AA--...............-----.....................--....GGC.AAAAGCG.GAAUC.GAUGA.AGCAGGAA CCUGU.GGAGCGUC.GAAAAAA-...............................CGCAAGU.AGCU.UC--...............-----.....................--....GGC.AAAAGCG.GACGC.GACGA.AGCAGGAA CCUGU.GGAGCGUC.AAAAAAA-...............................CGUGAGU.AGCC.UU--...............-----.....................--....GGC.AAAAGCG.GACGU.GUUGA.AGCAGGAA CCUGU.GGAGCGUC.GAAAAAAA...............................CGCGAGU.AGCC.UU--...............-----.....................--....GGC.AAAAGCG.GACGC.GUUGA.AGCAGGAA CCUGU.GGAGCGUC.GAAAAAA-...............................CGCAAGU.AGCC.UC--...............-----.....................--....GGC.AAAAGCG.GACGC.GUUGA.AGCAGGAA CCUGU.GGAGCGUC.ACAGCAAA...............................CGCGAGU.AGCC.UU--...............-----.....................--....AGC.AAAAGCG.GACGC.GCUGA.AGCAGGAA CCUGU.GGAGCGUC.AUAUCAAA...............................CGCGAGU.AGCC.UU--...............-----.....................--....GGC.AAAAGCG.GACGC.GUUGA.AGCAGGAA CCUGU.GGAGCGUCaUACUCAAA..............................cCGCGAGU.AGCC.UU--...............-----.....................--....GGC.AAAAGCG.GACGC.GUUGA.AGCAGGAA CCUGU.GGAGCGUC.AUAAAAA-...............................CGCAAGU.AGAU.----...............C----.....................--....GAC.AAAAGCG.GACGC.GCUGA.AGCAGGAA CCUGU.GGAGCGUC.AUAAAAAA...............................CGCAAGU.AGUG.U---...............C----.....................--....GACaAAAAGCG.GACGC.GCUGA.AGCAGGAA CCUGU.GGAGCGUC.AUAAAAAA...............................CGCAAGU.AGUA.UU--...............-----.....................--....GAC.AAAAGCG.GACGC.GCUGA.AGCAGGAA CCUGU.GGAGCGUC.AUAAAAAA...............................CGCAAGU.AGUA.U---...............C----.....................--....GAC.AAAAGCG.GACGC.GCUGA.AGCAGGAA CCUGU.GGAG-GUC.AUAAAAAA...............................CGCAAGU.AGUA.U---...............C----.....................--....GAC.AAAAGCG.GACGC.GCUGA.AGCAGGAA CCUGU.GGAGCGUC.AUAAAAAA...............................CGCAAGU.AGUU.UC--...............-----.....................--....GAC.AAAAGCG.GACGC.GGCGA.AGCAGGAA CUCUC.GGAGUGUU.AUAUCAAA...............................CGAAAUU.AGUA.UAUU...............CUUUUg....................AAu...UAC.AAAAUCG.GACAC.GUUGA.ACAGGGAA CCCUU.GGAGUGUC.AUAUCAAA...............................CGAAAGU.AGUG.UAUU...............CUUUUag...................AAu...UAC.AAAAUCG.GACAC.AUUGA.ACGGGGAA CCCUU.GGAGUGUU.AUAUAAAA...............................CGAAAGU.AGUA.UGUU...............UUUAG.....................AAu...UAC.AAAAUCG.GACAC.AUUGA.ACGGGGAA CCCUU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGUA.UAUUc..............UUUUA....................gAAu...UAC.AAAAUCG.GACAC.AUUGA.ACAGGGAA CCUGU.GGAGUGUU.AUAGCAAA...............................CGAAAGU.AGCC.----...............GC---.....................--....GGC.GAAAUCG.GACAC.GCUGA.AGCAGGAA CCUGU.GGAGUGUC.AUAACAAA...............................CGCAAGU.AGCU.----...............UC---.....................--....GGC.CAAAGCG.GACAC.AAUGA.AUCAGGAA CCUUU.GGAGAGUU.AUAUCAAA...............................CGAAAGU.AGCU.UA--...............-----.....................--....GGC.AAAAUCG.GACUU.GUAGA.AGAAGGAA CCUUU.GGAGAGUU.AUAUCAAA...............................CGAAAGU.AGCC.----...............AU---.....................--....GGC.AAAAUCG.GACUU.GUAGA.AGAAGGAA CCUGU.GGAGCGUU.ACACCAAA...............................CGUGAGUuAGCUuUA--...............-----.....................--....GGC.AAAAGCG.GACGC.GUUGA.AGCAGGAA CCUGU.GGAGUGUU.ACACCAAA...............................CGAAAGU.AGCU.UC--...............-----.....................--....GGC.AAAAUCG.GACAC.GAUGA.AUCAGGAA CCUGU.GGAGUGUU.AUAUCAAA...............................CGAAAAU.AGCC.U---...............UA---.....................--....GGC.GAAAUCG.GACAC.GAAGA.AGCAGGAA CCUGU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.UU--...............-----.....................--....GGC.AAAAUCG.GACAC.GUAGA.AGCAGGAA CCUGU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.UC--...............-----.....................--....GGC.AAAAUCG.GACAC.GUAGA.AGCAGGAA