Rfam: Seed sequence alignment for RF03064

URS0000D6953D_265546/1-61 Anoxybacillus ayderensis 0.0 URS0000D66A3D_491915/1-62 Anoxybacillus flavithermus WK1 0.0 URS0000D684E2_491915/1-62 Anoxybacillus flavithermus WK1 0.0 URS0000D689B9_491915/1-62 Anoxybacillus flavithermus WK1 0.0 URS0000D6D055_491915/1-62 Anoxybacillus flavithermus WK1 0.0 URS0000D6CCD5_491915/1-62 Anoxybacillus flavithermus WK1 0.0 URS0000D6B960_491915/1-62 Anoxybacillus flavithermus WK1 0.0 URS0000D65B40_1315967/1-62 Anoxybacillus flavithermus NBRC 109594 0.0 URS0000D69B75_1315967/1-62 Anoxybacillus flavithermus NBRC 109594 0.0 URS0000D6CD8A_1212546/1-62 Anoxybacillus kamchatkensis G10 0.0 URS0000D6C33B_1408254/1-62 Brevibacillus panacihumi W25 0.0 URS0000D6BBB9_1128398/1-72 [Clostridium] acidurici 9a 0.0 URS0000D6572F_1128398/1-72 [Clostridium] acidurici 9a 0.0 URS0000D6B40A_1128398/1-72 [Clostridium] acidurici 9a 0.0 URS0000D66AB1_12908/1-62 unclassified sequences 0.0 URS0000D6BE4F_12908/1-62 unclassified sequences 0.0 URS0000D6CAC4_12908/1-62 unclassified sequences 0.0 URS0000D69B16_12908/1-74 unclassified sequences 0.0 URS0000D6C0EE_12908/1-65 unclassified sequences 0.0 URS0000D692EB_12908/1-62 unclassified sequences 0.0 URS0000D66DCA_12908/1-62 unclassified sequences 0.0 URS0000D67383_12908/1-62 unclassified sequences 0.0 URS0000D6C3B9_12908/1-62 unclassified sequences 0.0 URS0000D6CFC8_12908/1-62 unclassified sequences 0.0 URS0000D6B37A_12908/1-63 unclassified sequences 0.0 URS0000D6709F_12908/1-62 unclassified sequences 0.0 URS0000D67E79_12908/1-62 unclassified sequences 0.0 URS0000D66838_12908/1-63 unclassified sequences 0.0 URS0000D676CE_12908/1-62 unclassified sequences 0.0 URS0000D697CC_12908/1-63 unclassified sequences 0.0

CCUUC.GGAGCGCC.AAACAAA-...............................CGAGAGU.AGCU.UC--...............-----.....................--....GGC.AAAAUCG.GGCGC.GAUGA.ACAAGGAA CCUUC.GGAGCGUC.AAAGAAA-...............................CGAGAGU.AGC-.----...............UUUUC.....................--....-GC.GAAAUCG.GGCGC.GAUGA.AAAAGGAA CCUUC.GGAGCGUC.AAAGAAA-...............................CGAGAGU.AGC-.----...............UUUUC.....................--....-GC.GAAAUCG.GGCGC.GAUGA.ACAAGGAA CCUUC.GGAGCGCC.AAAGAAA-...............................CGAGAGU.AGC-.----...............UUUUC.....................--....-GC.GAAAUCG.GGCGC.GAUGA.ACAAGGAA CCUUC.GGAGCGCC.AAAGAAA-...............................CGAGAGU.AGCG.U---...............UU---.....................--....CGC.GAAAUCG.GGCGC.GAUGA.ACAAGGAA CCUUC.GGAGCGUC.AAGGAAA-...............................CGAGAGU.AGCG.U---...............UU---.....................--....CGC.GAAAUCG.GGCGC.GAUGA.ACAAGGAA ACUUC.GGAGCGUC.AAAGAAA-...............................CGAGAGU.AGCU.U---...............UU---.....................--....CGC.GAAAUCG.GGCGC.GAUGA.ACAAGGAA CCUUC.GGAGCGCC.AAGGAAA-...............................CGAGAGU.AGCU.UU--...............U----.....................--....CGC.GAAAUCG.GGCGC.GAUGA.ACAAGGAA ACUUC.GGAGCGCC.AAAGAAA-...............................CGAGAGU.AGCGgUU--...............-----.....................--....CGC.GAAAUCG.GGCGC.GAUGA.ACAAGGAA CCUCU.GGAGUGCU.AUACCAAA...............................CGAGAGU.AGCU.UU--...............-----.....................--....GGC.GAAAUCG.GGCAC.GAUGA.ACAAGGAA CCUGU.GGAGUGUC.AUACCAAA...............................CGCAAGU.AGCC.CA--...............-----.....................--....GGC.AAAAGCG.GGCAC.GUCGA.AGCAGGAA CCCUC.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGUA.-GGUu..............CUUA-...................gaAC....UAU.AAAAUCG.GACAU.AAUGA.ACAGGGAA CCCUU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGUA.UGUU...............CUUAG....................aAC....UAC.AAAAUCG.GACAU.AAUGA.ACAGGGAA CCCUC.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGU-.AAGUuc.............UUA--...................gaACa...-AC.AAAAUCG.GACAU.AAUGA.ACAGGGAA CCUGU.GGAGAGUU.ACAGCAAA...............................CGUGAGU.AGCG.----...............AA---.....................--....GGC.GAAAACG.GACUC.GCUGA.AGCAGGAA CCUGU.GGAGAGUU.ACAGCAAA...............................CGUGAGU.AGCG.----...............AA---.....................--....GGC.AAAAGCG.GACGC.GGCGA.AGCAGGAA CCUGU.GGAGAUUU.ACAGCAAA...............................CGUUAGU.AGCU.AA--...............-----.....................--....GGC.AAAAGCG.GAAUC.AAUGA.AGCAGGAA CCUGU.GGAGCGUU.ACAUCAAA...............................CGCGAGU.AGCC.AUCG...............AGCUUgcu..................CG....GGC.AAAAACG.GACGC.AAUGA.AGCAGGAA CCUGU.GGAGCGUC.AUAAAAAA...............................CGCAAGU.AGUG.U--C...............-----.....................GA....CAA.AAAGUCG.GACGC.GCUGAaAGCAGGAA CCUGU.GGAGCGUU.ACAUCAAA...............................CGUUAGU.AGCU.----...............CC---.....................--....GGC.AAAAGCG.GACGC.GGCGA.AGCAGGAA CCUGU.GGAGCGUC.AUAUCAAA...............................CGCGAGU.AGCU.UC--...............-----.....................--....GGC.AAAAGCG.GACGC.GACGA.AGCAGGAA CCUGU.GGAGCGUC.AUAUCAAA...............................CGCGAGU.AGCU.UC--...............-----.....................--....GGC.AAAAGCG.GACGA.GACGA.AGCAGGAA CCUGU.GGAGCGUC.AUAUCAAA...............................CGCGAGU.AGCU.UC--...............-----.....................--....GGC.AAAAGCG.GACGC.GGCGA.AGCAGGAA CCUGU.GGAGCGUC.AUAUCAAA...............................CGCGAGU.AGCU.UC--...............-----.....................--....GGC.AAAAGCG.GACGC.GCCGA.AGCAGGAA CCUGU.GGAGCGUC.AUAAAAAA..............................aCGCGAGU.AGCU.UC--...............-----.....................--....GGC.AAAAGCG.GACGC.GACGA.AGUAGGAA CCUGU.GGAGCGUC.AUACCAAA...............................CGCGAGU.AGCU.----...............CC---.....................--....GGC.AAAAGCG.GACGC.GACGA.AGCAGGAA CCUGU.GGAGCGUC.ACAGCAAA...............................CGCGAGU.AGCU.----...............CC---.....................--....GGC.AAAAGCG.GACGC.GACGA.AGCAGGAA CCUGU.GGAGCGUC.ACAGCAAA...............................CGCGAGU.AGCU.AA--...............-----.....................--....GGC.AAAAGCG.GACGCgGACGA.AGCAGGAA CCUGU.GGAGCGUC.ACAGCAAA...............................CGCGAGU.AGCU.AA--...............-----.....................--....GGC.AAAAGCG.GACGC.AGCGA.AGCAGGAA CCUGU.GGAGCGUC.ACAGCAAA...............................CGCGAGU.AGCU.AA--...............-----.....................--....GGCaAAAAGCG.GACGC.AGCGA.AGCAGGAA