Rfam: Seed sequence alignment for RF03064

URS0000D6C2E1_1033739/1-67 Kurthia sp. JC30 0.0 URS0000D6957A_1033739/1-67 Kurthia sp. JC30 0.0 URS0000D6D2FB_12908/1-79 unclassified sequences 0.0 URS0000D6BF4C_12908/1-79 unclassified sequences 0.0 URS0000D65CAA_12908/1-79 unclassified sequences 0.0 URS0000D65DB7_12908/1-79 unclassified sequences 0.0 URS0000D690EB_12908/1-79 unclassified sequences 0.0 URS0000D6BDE1_12908/1-64 unclassified sequences 0.0 URS0000D68171_12908/1-64 unclassified sequences 0.0 URS0000D68244_12908/1-64 unclassified sequences 0.0 URS0000D6CA73_12908/1-64 unclassified sequences 0.0 URS0000D6D280_12908/1-64 unclassified sequences 0.0 URS0000D666FE_12908/1-64 unclassified sequences 0.0 URS0000D6C1BE_12908/1-64 unclassified sequences 0.0 URS0000D6A00E_12908/1-64 unclassified sequences 0.0 URS0000D66340_12908/1-70 unclassified sequences 0.0 URS0000D6C7F4_500633/1-69 Clostridium hiranonis DSM 13275 0.0 URS0000D68635_12908/1-77 unclassified sequences 0.0 URS0000D68614_12908/1-76 unclassified sequences 0.0 URS0000D69C14_12908/1-78 unclassified sequences 0.0 URS0000D6BA20_12908/1-75 unclassified sequences 0.0 URS0000D69498_12908/1-75 unclassified sequences 0.0 URS0000D6C18C_12908/1-75 unclassified sequences 0.0 URS0000D6C4A2_12908/1-75 unclassified sequences 0.0 URS0000D6BAC4_12908/1-75 unclassified sequences 0.0 URS0000D658C1_12908/1-77 unclassified sequences 0.0 URS0000D65AAE_12908/1-78 unclassified sequences 0.0 URS0000D698F0_12908/1-78 unclassified sequences 0.0 URS0000D6942C_12908/1-78 unclassified sequences 0.0 URS0000D682B4_12908/1-77 unclassified sequences 0.0

CCUGU.GGAGAGUG.AUACGAAA...............................CGUUAGU.AGGG.-A--...............GCAAGu....................--....GCC.GAGGACG.CAUUC.UGAGA.AGCAGGAA CCUGU.GGAGAGUG.ACACGAAA...............................CGUUAGU.AGGG.-A--...............GCAAGu....................--....GCC.GAGGACG.CAUUC.UGAGA.AGCAGGAA CCUAU.UGAGUGUU.AUAUCAAA...............................UGAUAGU.AGAC.--ACaugag..........CAAAG................uccauGU....GUC.GAGGUCA.GACAC.GGUGA.UGUAGGAA CCUAU.UGAGUGUU.ACAUCAAA...............................UGAUAGU.AGAC.--ACaugagc.........AAA--...............gcucauGU....GUC.AAGGUCA.GACAC.GGUGA.UGUAGGAA CCUAU.UGAGUGUU.ACAUCAAA...............................UGAUAGU.AGAC.--AC..augag........CUUUG..............cucau..GU....GUC.AAGGUCA.GACAC.GGUGA.UGUAGGAA CCUAU.UGAGUGUU.AUACCAAA...............................UGAUAGU.AGAC.--AC..augag........CUUUG..............cucau..GU....GUC.GAGGUCA.GACAC.GAUGA.UGUAGGAA CCUAU.UGAGUGUU.AUAUCAAA...............................UGAUAGU.AGAC.--AC..augag........CUUUG..............cucau..GU....GUC.GAGGUCA.GACAC.GAUGA.UGUAGGAA UCUGU.GGAGAGUC.GUAACAAA...............................CUAGAGU.AGUA.GA--...............AA---.....................--....UAC.AAAAUAG.GACUU.AUUGA.AGCAGAAA UCUGU.GGAGAGUU.AUACCAAA...............................CUAGAGU.AAAC.-A--...............UUA--.....................--....GUU.GAAAUAG.GACUU.GAUGA.AACAGAAA UCUGU.GGAGAAUU.AUAUAAAA...............................CUAAAGU.AAUA.G---...............AAA--.....................--....UAU.GAAAUAG.GAUUC.UUUGA.AACAGAAA UCUGU.GAAGAGUU.AUACCAAA...............................CUAAAGU.AAUA.G---...............AAA--.....................--....UAU.GAAAUAG.GACUC.GUUGA.AACAGAAA UCUGU.GGAGAGUU.AUACCAAA...............................CUAGAGU.AGUA.G---...............AAA--.....................--....UAU.GAAAUAG.GACUU.GAUGA.AACAGAAA UCUGU.GGAGAGUU.AUACCAAA...............................CUAGAGU.AGUA.G---...............AAA--.....................--....UAU.GAAAUAG.GACUC.AGUGA.AACAGAAA UCUGU.GGAGAGUU.AUGCCAAA...............................CUAGAGU.AGUA.G---...............AAA--.....................--....UAC.GAAAUAG.AACUC.ACUGA.AACAGAAA CCUUU.GGAGUGCU.AUAUCAAA...............................CAAUAUU.AGGU.U---...............UAU--.....................--....ACC.GAGGUUG.GGCAC.GAAGA.AUAAGGAA CCUUU.GGAGAAGU.AUACAAA-...............................CUAUAGU.AGCU.-AUU...............CUUUG.....................AAu...GGU.GAAAUAG.GCUUU.GGUGA.AUUAGGAA CCUUU.GGAGAAGU.AUACAAA-...............................CUAAAGU.AGCU.-AUA...............UUUGUa....................-U....AGU.AAAAUAG.GCUUC.GUUGA.AUUGGGAA CCUAU.UGAGUGUU.AUAUCAAA...............................UGGUAGU.AGGA.--GUg...gag........UGAAU..............cucc...AC....UCC.GAGGGCA.GACAC.GAUGA.UGUAGGAA CCUAU.UGAGUGUU.AUAUCAAA...............................UGAUAGU.AGAAgUAAG...............GCUUG.....................CUucgcUUU.GAGGUCA.GACAC.AGUGA.UGUAGGAA CCUAU.UGAGUGUU.CUAUCAAA...............................UGAUAGU.AGAU.--GU..aaagc........CUUU-..............gcuuu..AC....UUC.GAGGUCA.GACAC.GUUGA.UGUAGGAA CCUAU.UGAGUGUC.AUAUCAAA...............................UGAUAGU.AGAU.--GUgag............AAAC-...................ucUCau..AUU.GAGGUCA.GACAC.GAUGA.UGUAGGAA CCUAU.UGAGUGUC.AUAUCAAA...............................UGAUAGU.AGAU.GUGAg..............AUUAU....................cUCau..AUU.GAGGUCA.GACAC.GAUGA.UGUAGGAA CCUAU.UGAGUGUC.AUAUCAAA...............................UGAUAGU.AGAU.GUGAg..............AUUAU....................cUCau..AUU.AAGGUCA.GACAC.GAUGA.UGUAGGAA CCUAU.UGAGUGUC.AUAUCAAA...............................UGAUAGU.AGAU.GUGA............g..AAAC-.....................UCucauGUU.GAGGUCA.GACAC.GAUGA.UGUAGGAA CCUAU.UGAGUGUC.AUAUCAAA...............................UGAUAGU.AGAU.GUGA............g..AAAC-.....................UCucauAUU.GAGGUCA.GAUAC.GAUGA.UGUAGGAA CCUAU.UGAGUGUU.GCAUCAAA...............................UGAUAGU.AGAA.--GUaaag...........UCUUA.................cuuuAC....UUU.GAAGUCA.GACAC.GUUGA.UGUAGGAA CCUAU.UGAGUGUU.CUACCAAA...............................UGAUAGU.AGAA.--GUaaagu..........UUUU-................accuuAC....UUU.GAGGUCA.GACAC.GUUGA.UGUAGGAA CCUAU.UGAGUGUU.ACACAAAA...............................UGAUAGU.AGAU.--GUaaag...........UCUUUg................cuuuAC....UUU.GAGGUCA.GACAC.GUUGA.UGUAGGAA CCUAU.UGAGUGUC.AUACAAAA...............................UGAUAGU.AGAU.--GUaaag...........UCUUUg................cuuuAC....UUU.GAGGUCA.GACAC.GUUGA.UGUAGGAA CCUAU.UGAGUGUU.CUAUCAAA...............................UGAUAGU.AGAG.--GUaaag...........UUUUA.................cuuuAC....UUU.GAGGUCA.GACAC.GUUGA.UGUAGGAA