Rfam: Seed sequence alignment for RF03064

URS0000D6A37D_12908/1-63 unclassified sequences 0.0 URS0000D66F15_657316/1-62 Megamonas hypermegale ART12/1 0.0 URS0000D6B22C_12908/1-64 unclassified sequences 0.0 URS0000D6A344_12908/1-61 unclassified sequences 0.0 URS0000D6B3DB_12908/1-65 unclassified sequences 0.0 URS0000D6D141_12908/1-63 unclassified sequences 0.0 URS0000D6582B_12908/1-63 unclassified sequences 0.0 URS0000D68FC0_12908/1-64 unclassified sequences 0.0 URS0000D68590_12908/1-62 unclassified sequences 0.0 URS0000D6C2BF_12908/1-63 unclassified sequences 0.0 URS0000D68A04_12908/1-63 unclassified sequences 0.0 URS0000D6B262_12908/1-63 unclassified sequences 0.0 URS0000D6917B_1134784/1-67 Enterococcus faecalis 599 0.0 URS0000D6917B_1169289/1-67 Enterococcus faecalis EnGen0363 0.0 URS0000D69632_888064/1-67 Enterococcus italicus DSM 15952 0.0 URS0000D659B2_12908/1-67 unclassified sequences 0.0 URS0000D6B543_1121865/1-67 Enterococcus columbae DSM 7374 = ATCC 51263 0.0 URS0000D6A46F_749518/1-67 Enterococcus faecalis TX2134 0.0 URS0000D6972D_1072576/1-67 Enterococcus mundtii crl1656 0.0 URS0000D6B200_1072576/1-67 Enterococcus mundtii crl1656 0.0 URS0000D6AB30_1157417/1-67 Enterococcus hirae EnGen0127 0.0 URS0000D69D68_12908/1-68 unclassified sequences 0.0 URS0000D6A4B4_1297581/1-62 Anoxybacillus flavithermus AK1 0.0 URS0000D680A5_265546/1-61 Anoxybacillus ayderensis 0.0 URS0000D67670_1921421/1-61 Geobacillus genomosp. 3 0.0 URS0000D66F7F_1921421/1-61 Geobacillus genomosp. 3 0.0 URS0000D66A01_1337888/1-61 Geobacillus kaustophilus GBlys 0.0 URS0000D67B8F_1315967/1-61 Anoxybacillus flavithermus NBRC 109594 0.0 URS0000D67B8F_491915/1-61 Anoxybacillus flavithermus WK1 0.0 URS0000D69C7B_1315967/1-61 Anoxybacillus flavithermus NBRC 109594 0.0

CCUUUuGGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AU---.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AU---.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.CUAUCAAA...............................CGAAAGU.AGCU.-A--...............AC---.....................--....GGC.AAAAUCG.GAUUC.AAUGAaGUAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGC-.----...............UACG-.....................--....-GC.-AAAUCG.GAUUC.AAUGA.AGAAGGGA CCUUUuGGAGAAUC.AUAUCAAAa..............................CGAAAGU.AGC-.----...............UACG-.....................--....-GCaAAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGC-.----...............UACG-.....................--....-GCaAAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGC-.----...............UAUG-.....................--....-GCaAAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUUuGGAGAAUC.AUAUCAAA...............................CGAAAGU.AGC-.----...............UAUG-.....................--....-GCaAAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUAG.GGAGAGUU.AUAGCAAA...............................CGAAAGU.AGCC.----...............AC---.....................--....GGC.GAAAUCG.GACUC.GCUGA.ACUAGGAA CCUGU.GGAGAGUU.ACAGCAAA...............................CGUGGGU.AGCUuUA--...............-----.....................--....AGC.AAAAACG.GAUUC.GAUGA.AACAGGAC CCUGU.GGAGAAUC.ACAGCAAA...............................CGUUAGU.AGCUuUA--...............-----.....................--....AGC.AAAAACG.GAUUC.GAUGA.AGCAGGAA CCUGU.GGAGAAUC.ACAGCAAA...............................CGUUAGU.AGCUuUA--...............-----.....................--....UGC.AAAAACG.GAUUC.GAUGA.AGCAGGAA CCUGC.GGAGUGUU.AUAGCAAA...............................CGAGAGU.AGCG.-AGC...............AA---.....................GU....AGC.AAAAUCG.GGCAC.GUAGA.AACAGGAA CCUGC.GGAGUGUU.AUAGCAAA...............................CGAGAGU.AGCG.-AGC...............AA---.....................GU....AGC.AAAAUCG.GGCAC.GUAGA.AACAGGAA CCUGU.GGAAUGUU.AUAGCAAA...............................CGAGAGU.AGCG.-AGC...............AA---.....................GU....GGC.AAAAUCG.GACAC.GUAGA.AACAGGAA CCUGC.GGAGUGUU.AUAGCAAA...............................CGAGAGU.AGCG.-AAC...............AA---.....................GU....UGC.AAAAUCG.GACAC.GUAGA.AACAGGAA CCUGC.GGAGUGUU.AAAGCAAA...............................CGAGAGU.AGCG.-AGC...............AA---.....................GU....GGC.AAAAUCG.GACAC.GUAGA.AACAGGAA CCUGC.GGAGUGUU.AAAACAAA...............................CGAGAGU.AGCG.-AGC...............AA---.....................GU....GGC.AAAAUCG.GACAC.GUAGA.AACAGAAA CCUGU.GGAGUGUU.AGAACAAA...............................CGAGAGU.AGCG.-A--...............GCAAUg....................--....GGC.AAAAUCG.GGCAC.GUAGA.AACAGGAA CCUGU.GGAGUGUU.AGAACAAA...............................CGAGAGU.AGCG.-A--...............GGAAGu....................--....GGC.AAAAUCG.GACAC.GUAGA.AACAGGAA CCUGC.GGAGUGUU.AGAGCAAA...............................CGAGAGU.AGCG.-A--...............GGAAGu....................--....GGC.AAAAUCG.GACAC.GUAGA.AACAGGAA CCUGU.GGAAUGUU.AUAGCAAA...............................CGAGAGU.AGCG.-A--...............GCAAGu....................--....GGC.AAAAUCGgAACAC.GUAGA.AACAGGAA CCUUC.GGAGCGCC.AUAUCAAA...............................CGAGAGU.AGCU.UU--...............-----.....................--....GGC.GAAAUCG.GGCGC.GAUGA.ACAAGGAA CCUUC.GGAGUGUC.AAACAAA-...............................CGAGAGU.AGCU.UC--...............-----.....................--....GGC.AAAAUCG.GACAC.GAUGA.ACAAGGAA UCUUC.GGAGCGUC.AACGAAA-...............................CGAGAGU.AGCU.UC--...............-----.....................--....GGC.GAAAUCG.GACGC.GAUGA.GCAAGGAA CCUUC.GGAGCGUC.AAUCAAA-...............................CGAGAGU.AGCU.UC--...............-----.....................--....GGC.GAAAUCG.GACGC.GAUGA.ACAAGGAA CCUUC.GGAGCGUC.AACCAAA-...............................CGAGAGU.AGCU.UC--...............-----.....................--....GGC.GAAAUCG.GACGC.GAUGA.ACAAGGAA CCUUC.GGAGCGCC.AAGGAAA-...............................CGAGAGU.AGCU.----...............UC---.....................--....GGC.AAAAUCG.GGCGC.GAUGA.ACAAGGAA CCUUC.GGAGCGCC.AAGGAAA-...............................CGAGAGU.AGCU.----...............UC---.....................--....GGC.AAAAUCG.GGCGC.GAUGA.ACAAGGAA CCUUC.GGAGCGCC.AAAGAAA-...............................CGAGAGU.AGCU.UC--...............-----.....................--....GGC.AAAAUCG.GGCGC.GAUGA.ACAAGGAA