Rfam: Seed sequence alignment for RF03064

URS0000D6C4B6_1212764/1-62 Paenibacillus popilliae ATCC 14706 0.0 URS0000D65D5A_12908/1-67 unclassified sequences 0.0 URS0000D662A6_1354301/1-63 Clostridium sp. BL8 0.0 URS0000D67AF6_12908/1-62 unclassified sequences 0.0 URS0000D6AAF9_12908/1-62 unclassified sequences 0.0 URS0000D68C32_12908/1-63 unclassified sequences 0.0 URS0000D69ED3_12908/1-62 unclassified sequences 0.0 URS0000D69ED3_742816/1-62 Megamonas funiformis YIT 11815 0.0 URS0000D6B337_12908/1-62 unclassified sequences 0.0 URS0000D66F09_12908/1-63 unclassified sequences 0.0 URS0000D6A6FF_12908/1-62 unclassified sequences 0.0 URS0000D6980A_12908/1-62 unclassified sequences 0.0 URS0000D6C38F_12908/1-62 unclassified sequences 0.0 URS0000D6939B_12908/1-62 unclassified sequences 0.0 URS0000D67348_12908/1-62 unclassified sequences 0.0 URS0000D6980B_12908/1-62 unclassified sequences 0.0 URS0000D657D9_12908/1-62 unclassified sequences 0.0 URS0000D659FA_12908/1-64 unclassified sequences 0.0 URS0000D6B7BA_12908/1-62 unclassified sequences 0.0 URS0000D6B7BA_742816/1-62 Megamonas funiformis YIT 11815 0.0 URS0000D6A4AB_12908/1-62 unclassified sequences 0.0 URS0000D68059_12908/1-62 unclassified sequences 0.0 URS0000D6BF2D_12908/1-62 unclassified sequences 0.0 URS0000D6B365_12908/1-62 unclassified sequences 0.0 URS0000D67D1E_12908/1-63 unclassified sequences 0.0 URS0000D6CEFA_12908/1-63 unclassified sequences 0.0 URS0000D6B48D_12908/1-61 unclassified sequences 0.0 URS0000D6B697_12908/1-63 unclassified sequences 0.0 URS0000D68AD1_12908/1-63 unclassified sequences 0.0 URS0000D66F15_12908/1-62 unclassified sequences 0.0

CCUGU.GGAGUGUC.AUGCCAAA...............................UGCGAGU.AGCU.CA--...............-----.....................--....GGC.AAAAGCA.GACAC.GUAGA.AGCAGGAA CCUGU.GGAGUGUU.AUAGCAAA...............................CGAAAGU.AGUC.--GC...............A----.....................GUuu..GAC.GAAAUCG.GACAC.AAGGA.AGCAGGAA CCCUC.GGAGUGUU.AUAUCAAA...............................CGAAAUU.AGCC.UU--...............U----.....................--....AGU.GAAAUCG.GAUAC.GUUGA.ACAGGGAA CCUUU.GGAGAGUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGU.AAAAUCG.GAUUC.UGCGA.AGAAGGAA CCUUU.GGAGAGUC.GCAUCAAA...............................CGAAAGU.AGCU.----...............AU---.....................--....GGC.AAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGCaAAAUACG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.-A--...............C----.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.-A--...............C----.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GGUUC.UAUGA.AGAAGGAA CCUUUuGGAGAGUC.AUAUCAAA...............................UGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCA.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGUC.AUAUCAAA...............................UGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCA.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGUC.AUAUCAAA...............................UGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGUU.AUAUCAAA...............................GGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGUU.AUAUCAAA...............................GGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.UGUGA.AGAAGGAA CCUUU.GGAGAGUU.AUAUCAAA...............................UGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.UGUGA.AGAAGGAA CCUUU.GGAGAGUU.AUAUCAAA...............................UGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGUU.AUAUCAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGUU.AUAUCAAA..............................aCGAAAGU.AGCU.----...............AC---.....................--....GGCaAAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGUU.AUAUUAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGUU.AUAUUAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAAUU.AUAUCAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAARGGA CCUUU.GGAGAAUC.CUAUCAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AU---.....................--....GGC.AAAAUCG.GAUUC.UAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGUuAGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCGgGAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAA-...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAAa..............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUUuGGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUC.AUAUCAAA...............................CGAAAGU.AGCU.----...............AU---.....................--....GGC.AAAAUCG.GAUUC.AAUGA.AGAAGGAA