Rfam: Seed sequence alignment for RF03064

URS0000D6AA8D_12908/1-73 unclassified sequences 0.0 URS0000D68F35_12908/1-73 unclassified sequences 0.0 URS0000D65F71_12908/1-73 unclassified sequences 0.0 URS0000D6B0B8_1128398/1-65 [Clostridium] acidurici 9a 0.0 URS0000D66FB5_212717/1-62 Clostridium tetani E88 0.0 URS0000D685D0_941968/1-62 Clostridium botulinum H04402 065 0.0 URS0000D685D0_498213/1-62 Clostridium botulinum B1 str. Okra 0.0 URS0000D668DA_545243/1-62 Clostridium sp. SL206 0.0 URS0000D693E4_545243/1-61 Clostridium sp. SL206 0.0 URS0000D690EE_12908/1-62 unclassified sequences 0.0 URS0000D672FE_1053229/1-62 Bacillus cereus VD107 0.0 URS0000D6AD5E_12908/1-63 unclassified sequences 0.0 URS0000D6C8B9_12908/1-62 unclassified sequences 0.0 URS0000D694E7_12908/1-86 unclassified sequences 0.0 URS0000D6AA98_12908/1-86 unclassified sequences 0.0 URS0000D68F1A_12908/1-73 unclassified sequences 0.0 URS0000D6C1F8_12908/1-73 unclassified sequences 0.0 URS0000D67126_12908/1-74 unclassified sequences 0.0 URS0000D6CA08_12908/1-58 unclassified sequences 0.0 URS0000D67342_12908/1-63 unclassified sequences 0.0 URS0000D6A7D1_12908/1-67 unclassified sequences 0.0 URS0000D6C893_927704/1-73 Selenomonas ruminantium subsp. lactilytica TAM6421 0.0 URS0000D69161_927704/1-73 Selenomonas ruminantium subsp. lactilytica TAM6421 0.0 URS0000D6C2A3_12908/1-73 unclassified sequences 0.0 URS0000D6B7E6_927704/1-73 Selenomonas ruminantium subsp. lactilytica TAM6421 0.0 URS0000D6D29E_927704/1-73 Selenomonas ruminantium subsp. lactilytica TAM6421 0.0 URS0000D6A255_12908/1-62 unclassified sequences 0.0 URS0000D6CA46_12908/1-74 unclassified sequences 0.0 URS0000D68A37_12908/1-74 unclassified sequences 0.0 URS0000D67815_12908/1-73 unclassified sequences 0.0

CCUCC.GGAGCAUU.AUAUCAAA...............................CGCAAGU.AGCU.UGUC...............CUUCUg....................GAu...AGC.AAAAACG.GAUGU.GAUGA.ACGAGGAA CCUCC.GGAGCAUU.AUAUCAAA...............................CGCAAGU.AGCU.UGUC...............CUUCUg....................GAu...GGC.AAAAACG.GAUGU.GAUGA.ACGAGGAA CCUCC.GGAGCAUU.CUAUCAAA...............................CGUGAGU.AGCU.UGUC...............CUUCGa....................GAu...GGC.AAAAACG.AAUGC.GAUGA.ACGAGGAA CCCUU.GGAGUGUU.AUAUCAUC......aa......................aCGAGAGU.AGUU.UA--...............-----.....................--....GAC.AAAAUCG.GACAC.GAUGA.ACAGGGAA CCUAU.GGAGUGUU.AUAGCAAA...............................CGAAAGU.AGCU.UA--...............-----.....................--....GGC.AAAAUCG.GAUAU.UAUGA.AGUAGGAA CCUAU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.UA--...............-----.....................--....GGC.AAAAUCG.AACAU.UAUGA.AGUAGGAA CCUAU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCU.UA--...............-----.....................--....GGC.AAAAUCG.AACAU.UAUGA.AGUAGGAA CCUAU.GGAGUGUU.AUAACAAA...............................CCAAAGU.AGCU.UU--...............-----.....................--....GGC.AAAAUGG.AACAC.UAUGA.AUUAGGAA CUUAU.GGAGUGUU.AUACAAA-...............................CCAAAGU.AGCU.U---...............G----.....................--....GGC.AAAAUGG.AACAC.UAUGA.AGUAGGAA CCUAU.GGAGUGUC.ACAUCAAA...............................CGAAAGU.AGCC.UC--...............-----.....................--....GGC.AAAAUCG.GACAC.AACGA.AGUAGGAA CCCUC.GGAGAGUU.ACAGCAAA...............................CAAAAGU.AGCU.UC--...............-----.....................--....GGC.AAAAUUG.GACUC.GUAGA.ACAGGGAA CCCUC.GGAGAGUU.AUAUCAAA...............................CAAAAGU.AGCUuUU--...............-----.....................--....AGC.AAAAUUG.GACUC.AUUGA.ACAGGGAA CCUUU.GGAGUGUU.ACAACAAA...............................CGAAAGU.AGC-.----...............UAAU-.....................--....-GC.GAAAUCG.GACAC.UGAGA.AGAAGGAA CCUUU.GGAGCGUU.AAGCCAAA...............................CGAAAGU.AGCC.AAGCaaacaagc.......GUAA-.............gcgaguaaGC....GGC.AAAAUCG.GACGC.AAUGA.AGAAGGAA CCUUU.GGAGCGUU.AAGCCAAA...............................CGAAAGU.AGCC.GGGCgaauaagc.......GCAA-.............gcgagcgaGC....GGC.AAAAUCG.GACGC.GAUGA.AUUAGGAA CCUUU.GGAGUGUU.ACAGCAAA...............................CGAAAGU.AGUA.UAUC...............CUUUGg....................GAu...UAC.AAAAUCG.GACAC.AUUGA.AAAAGGAA CCUGU.GGAGCGUU.ACAGCAAA...............................CGUUAGU.AGUC.-AGUc..............AGUGAu...................gGC....GAC.AAAAGCG.GACGC.GUUGA.AGCAGGAA CCCUC.GGAGUGUU.AAAGCAAA...............................CGAAAGU.AGUU.UAUUc..............CUUGU....................gAAg...AAC.GAAAUCG.GACAC.GUUGA.ACAGGGAA -CCCA.---GUGUU.AUAUCAAA...............................CGAAAGU.AGUC.UG--...............-----.....................--....GAC.GAAAUCG.GACAC.GUUGA.AUAGGGAA CCUGU.GGAGUGUUuACAUCAAA...............................CCAAAGU.AGCU.----...............CC---.....................--....GGC.AAAAUGG.GACAC.UGUGA.AGCAGGAA CCUCU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGUC.GC--...............AGUUU.....................--....GGC.AAAAUCG.GACAC.GUUGA.ACGAGGAA CCUCU.GGAGCGUU.AUAUCAAA...............................CGUGAGU.AGUC.UGUU.c.............UUCG-...................ggAC....GGC.AAAAGCG.GACGC.AGUGA.AUGAGGAA CCUUU.GGAGCGUU.AUAUCAAA...............................CGUGAGU.AGUC.UGUU.c.............UUCG-...................ggAC....GGC.AAAAGCG.GACGC.AGUGA.AUGAGGAA CCUCU.GGAGCGUU.AUAUCAAA...............................CGUGAGU.AGUC.UGUU.c.............UUCG-...................ggAC....GGC.AAAAGCG.GACGC.GGUGA.AUGAGGAA CCUGU.GGAGCGUU.AUAUCAAA...............................CGAGAGU.AGCU.UGUU...............CUUCG.....................GAgu..GGC.AAAAUCG.GACGC.AAUGA.AUCAGGAA CCUGU.GGAGCGUU.AUAUUAAA...............................CGAGAGU.AGCU.UGUU...............CUUCG.....................GAgu..GGC.AAAAUCG.GACGC.AAUGA.AUCAGGAA CCUCU.GGAGCGUU.AUAUCAAA...............................CGAAAGU.AGCU.UC--...............-----.....................--....GGC.AAAAUCG.GACGC.GGUGA.AUGAGGAA CCUGU.GGAGCGUU.AUAUCAAA...............................CGAAAGU.AGCU.--GCc..............UGCUUc...................gGCag..GGC.AAAAUCG.GACGC.AAUGA.AACAGGAA CCUGU.GGAGCGUU.AUAUCAAA...............................CGAAAGU.AGCU.--GCc..............UGCUUc...................gGCag..GGC.AAAAUCG.AACGC.AAUGA.AACAGGAA CCUCU.GGAGCAUU.ACAUCAAA...............................CGCAAGU.AGCU.U-CG...............UGCUUg....................CGcg..GGC.AAAAGCG.GAUGC.GAUGA.AUGAGGAA