Rfam: Seed sequence alignment for RF03064

URS0000D6717E_12908/1-66 unclassified sequences 0.0 URS0000D663A8_12908/1-74 unclassified sequences 0.0 URS0000D672D0_12908/1-76 unclassified sequences 0.0 URS0000D6863A_12908/1-65 unclassified sequences 0.0 URS0000D6B45B_12908/1-64 unclassified sequences 0.0 URS0000D673AC_12908/1-65 unclassified sequences 0.0 URS0000D68DA5_12908/1-65 unclassified sequences 0.0 URS0000D6609F_12908/1-65 unclassified sequences 0.0 URS0000D68558_12908/1-73 unclassified sequences 0.0 URS0000D6CF6B_12908/1-74 unclassified sequences 0.0 URS0000D678A0_12908/1-74 unclassified sequences 0.0 URS0000D6B8B2_12908/1-72 unclassified sequences 0.0 URS0000D67B47_12908/1-64 unclassified sequences 0.0 URS0000D66CFC_12908/1-76 unclassified sequences 0.0 URS0000D67BAF_12908/1-67 unclassified sequences 0.0 URS0000D697A3_12908/1-67 unclassified sequences 0.0 URS0000D696E9_12908/1-67 unclassified sequences 0.0 URS0000D65A70_12908/1-67 unclassified sequences 0.0 URS0000D67C9B_12908/1-66 unclassified sequences 0.0 URS0000D6D29F_12908/1-62 unclassified sequences 0.0 URS0000D65D1A_12908/1-62 unclassified sequences 0.0 URS0000D65D1A_1263021/1-62 Firmicutes bacterium CAG:41 0.0 URS0000D6B07B_12908/1-62 unclassified sequences 0.0 URS0000D6C130_583346/1-62 Clostridium kluyveri NBRC 12016 0.0 URS0000D6BDE5_86416/1-62 Clostridium pasteurianum BC1 0.0 URS0000D6641F_12908/1-78 unclassified sequences 0.0 URS0000D65709_12908/1-70 unclassified sequences 0.0 URS0000D678AD_12908/1-85 unclassified sequences 0.0 URS0000D6C7AB_12908/1-63 unclassified sequences 0.0 URS0000D6AF06_12908/1-62 unclassified sequences 0.0

CCUGU.GGAGUGUC.ACAUCCA-...............................CCGUAGU.AGCG.----...............AGCUUgg...................--....GGC.GAGGCGG.GACAC.GUUGA.AGCAGGAA CCCUU.GGAGAGUU.AUAUCAAA...............................CGAAAGU.AGGU.U-GU...............UAUUUaua..................AUu...UCC.AAAAUCG.AAUUC.GUAGA.ACAGGGAA CCUAU.GGAGUGUC.AUAUCAAA...............................CGAAAGU.AGUU.-AAUaag............AUUUU..................cuuAU....AAC.CAAAUCG.GACAC.GAUGA.AGUAGGAA NNUUC.GGAGUGUC.AUAUCAAA...............................CAUGAGU.AGAUuUA--...............UU---.....................--....AUC.AAAAGUG.GACAC.GGUGA.ACAAGGAA CCUUU.GGAGUGUC.CUAUCAAA...............................CAUAAGU.AGAU.UU--...............AU---.....................--....AUC.GAAAAUG.GACAC.GGUGA.ACAAGGAA CUUUU.GAAGUGUC.AUAUCAAA...............................CAUGAGU.AGAU.U---...............UAUU-.....................--....AUC.GAAAAUG.GACAC.GGUGA.ACAAGGAA CCUUU.GGAGUGUC.AUAUCAAA...............................CAUGAGU.AGAU.U---...............UAUU-.....................--....AUC.GAAAAUG.GACAC.GGUGA.ACAAGGAA CCUUU.GGAGUGUC.AUAUCAAA...............................CAUUAGU.AGAU.U---...............UAUU-.....................--....AUC.GAAAAUG.GACAC.AAUGA.ACAAGGAA CCUGU.GGAGCGUU.ACAGCAAA...............................CGCUAGU.AGCC.UGUC...............AGUAAu....................GAc...GAC.CAACGCG.GACGC.UUUGA.AGCAGGAA CCCUC.GGAGCGUU.AUAUCAAA...............................CGAAAGU.AGUU.UUAG...............UGAGAa....................CUaa..UAC.AAAAUCG.GGCGC.GAUGA.AUUGGGAA CCUUU.GGAGCGUU.AUAUCAAA...............................CGAAAGU.AGUC.UUAG...............UAAAAa....................CUaa..UAC.AAAAUCG.GACGU.GUUGA.AUUAGGAA CCUUU.GGAGAGUU.AGAUCAAA...............................UCAAAGU.AGUC.-ACUc..............CUUG-.....................UGau..GAC.AAAAUGA.GACUC.GUUGA.AUAAGGAA CCCUU.GGAGUGUU.ACACCAAA...............................UGAAAGU.AGUC.----...............CUUG-.....................--....GAC.AAAAUCA.GACAC.GAUGA.AUAGGGAA CCCUU.GGAGCGUU.ACAUCAAA...............................CGAAAGU.AGUC.AAGCu..............AUUUAauu.................gGC....GAC.AAAAUCG.GACGC.AAUGA.GUAGGGAA CCCUU.GGAGCGUU.ACAUCAAA...............................CGAAAGU.AGUCgCA--...............-GUAU.....................--....GGC.AAAAUCG.GAUGC.UAUGA.ACAGGGAA CCCUC.GGAGCGUU.ACAUCAAA...............................CGAAAGU.AGUC.GA--...............GGUUU.....................--....GAC.AAAAUCG.GACGC.GUUGA.ACAGGGAA CCCUC.GGAGCGUU.GCAUCAAA...............................CGAAAGU.AGUC.GA--...............GGUUU.....................--....GAC.AAAAUCG.GACGC.GUUGA.ACAGGGAA CCCUC.UGAGCGUC.ACAUCAAA...............................CGAAAGU.AGUCgCA--...............-GUAU.....................--....GAC.AAAAUCG.GACGC.GUUGA.ACAGGGAA CCUUC.GGAGCGUC.AAAGCAA-...............................CGAAAGU.AGCA.UU--...............AGUUU.....................--....UGC.CAAAUCG.GACGC.GUUGA.ACGAGGAA UCUAC.AGAGUGUU.AUAACAAA...............................UGAGAGU.AGCU.UA--...............-----.....................--....GGC.AAAAUCA.GACAC.GAUGA.AGUAGAAA UCUAU.GGAGUGUC.AUAACAAA...............................UGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCA.GAUAC.GUUGA.AGUAGAAA UCUAU.GGAGUGUC.AUAACAAA...............................UGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCA.GAUAC.GUUGA.AGUAGAAA UCUAU.GGAGUGUC.AUAACAAA...............................UGAAAGU.AGCU.----...............AC---.....................--....GGC.AAAAUCA.GACAC.GUUGA.AGUAGAAA CCUUU.GGAGCAUC.AUAUCAAA...............................CCAAAGU.AGCU.UA--...............-----.....................--....GGC.AAAAUGG.GGUGU.AUUGA.AAAAGGAA CCCUU.GGAGUGCU.UAUACAAA...............................CCAAAGU.AGCU.UC--...............-----.....................--....GGC.AAAAUGG.AGUAC.GUUGA.ACAGGGAA CCUGU.GGACCGUU.AUACAAA-...............................CGAAAGU.AGUC.UAAAgac............CGAUAc.................gucUUu...GAU.AAAAUCG.GACGG.UAUGA.AGCAGGAA CCCUU.GGAGUGUU.ACAGCAAA...............................CGAAAGU.AGUA.UA--...............UGAAAa....................UA....UAC.CAAAUCG.GACAC.GAUGA.ACAGGGAA CUUUG.GGAGCGUU.AUAUCAAA...............................CGAAAGU.AGU-.UAGCaaacgagc.......GUAA-.............gcgaguaaGCg...-AC.AAAAUCG.GACGC.GAUGA.ACAAGGAA CCUUG.GAAGAGUU.AUAUCAAA...............................CUAGAGU.AGAU.U---...............UU---.....................--....AUC.GAAAUAG.GACUU.UAUGA.AUAAGGAA CCUUG.GGAGAGUU.AUAAAAA-...............................CUGAAGU.AGC-.----...............CUUUA.....................--....-GC.AAAACAG.GACUC.GAUGA.AUAAGGAA