Rfam: Seed sequence alignment for RF03064

URS0000D6BF8F_12908/1-79 unclassified sequences 0.0 URS0000D6CACC_12908/1-70 unclassified sequences 0.0 URS0000D69CBB_12908/1-62 unclassified sequences 0.0 URS0000D68617_12908/1-62 unclassified sequences 0.0 URS0000D65FDA_12908/1-65 unclassified sequences 0.0 URS0000D689FE_1144308/1-62 Brevibacillus sp. BC25 0.0 URS0000D69B8B_1230477/1-62 Bacillus subtilis S1-4 0.0 URS0000D6B103_12908/1-65 unclassified sequences 0.0 URS0000D6A265_12908/1-62 unclassified sequences 0.0 URS0000D6861B_12908/1-62 unclassified sequences 0.0 URS0000D661D0_12908/1-64 unclassified sequences 0.0 URS0000D691C5_1289590/1-73 Clostridium botulinum CB11/1-1 0.0 URS0000D690DE_12908/1-66 unclassified sequences 0.0 URS0000D6C127_12908/1-66 unclassified sequences 0.0 URS0000D68CA1_12908/1-73 unclassified sequences 0.0 URS0000D6C598_583346/1-61 Clostridium kluyveri NBRC 12016 0.0 URS0000D6C193_536227/1-61 Clostridium carboxidivorans P7 0.0 URS0000D66EAF_658056/1-61 Clostridium phage D-1873 0.0 URS0000D6B139_929505/1-61 Clostridium botulinum C str. Stockholm 0.0 URS0000D6A33F_86416/1-61 Clostridium pasteurianum BC1 0.0 URS0000D69214_12908/1-62 unclassified sequences 0.0 URS0000D65C0A_1262449/1-72 Clostridium pasteurianum DSM 525 = ATCC 6013 0.0 URS0000D69C71_1262449/1-61 Clostridium pasteurianum DSM 525 = ATCC 6013 0.0 URS0000D67FB4_1345695/1-63 Clostridium saccharobutylicum DSM 13864 0.0 URS0000D6AB43_12908/1-73 unclassified sequences 0.0 URS0000D663BA_12908/1-62 unclassified sequences 0.0 URS0000D6C4AB_12908/1-76 unclassified sequences 0.0 URS0000D67A25_12908/1-62 unclassified sequences 0.0 URS0000D6D3B3_12908/1-62 unclassified sequences 0.0 URS0000D68B6D_12908/1-62 unclassified sequences 0.0

CCUUU.GGAGCGUU.ACAUCAAA...............................CGAGAGU.AGCAcUACUgga............CUUGG..................uucAGga..-GC.GAAAUUG.GACGC.GAUGA.AUGAGGAA CCUCC.GGAGCGUU.AUACCAAA...............................CGUGAGU.AGCC.-AG-...............CAACA.....................-Ca...GGCaAAAAACG.GACGC.GAAGA.ACGAGGAA CCUCU.GGAGCGUC.AUACCAAA...............................CGUGAUU.AGCU.UA--...............-----.....................--....GGC.GAAAGCG.GACGC.GAAGA.AUGAGGAA CCUCU.GGAGCGUC.AUACCAAA...............................CGUGAUU.AGCU.AA--...............-----.....................--....GGC.GAAAGCG.GACGC.UAUGA.AUGAGGAA ACUGU.GGAGUAUU.AUACCAAA...............................UGUAAGU.AGCU.U---...............UUAU-.....................--....AGC.AAAAGCA.GAUAC.GUUGA.GACGGUUG CCUGU.GGAGUGUC.AUAUCCAA...............................UGUAAGU.AGCU.----...............UC---.....................--....GGC.AAAAGCA.GGCAC.GAAGA.AGCAGGAA CCUGU.GGAGUAUC.AUAUCAAA...............................UGUGAGU.AGCU.UC--...............-----.....................--....GGC.AAAAGCA.GAUAC.AAAGA.AGCAGGAA ACUGU.GGAGUAUC.AUAUCAAA...............................UGCGAGU.AGCU.U---...............UUAU-.....................--....GGC.AAAAGCA.GAUAC.GUUGA.AACAGUAA CCUUU.GGAGCGUC.ACACCAAA...............................CGCAAGU.AGAU.UC--...............-----.....................--....GUC.AAAAGCG.GACGC.GUUGA.AUUAGGAA CCUUC.GGACUGUU.GUAUCAAA...............................CGAAAGU.AGCU.----...............UC---.....................--....GGU.GAAAUCG.GACAG.GAUGA.ACAAGGAA CCUUG.GGAGAGUU.AUACAAA-...............................CUGAAGU.AGC-.-AUU...............-----.....................AAaa..-GC.AAAACAG.AGCUC.AAUGA.AUAAGGAA CCUGU.GAAGAAUU.AUACAAAA...............................UGAAAGU.AGUA.UGUG...............AUUUAu....................CAc...UAC.AAAAUCA.GAUUC.GUUGA.AACAGGAA CCUGU.GGAGAAUU.AUAUCAAA...............................CGAAAGU.AGUA.U---...............UCAUA.....................--....UAC.AAAAUCG.GAUUC.GAUGA.AACAGGAA CCUGU.GGAGAAUU.AUAUCAAA...............................CGAAAGU.AGUA.----...............UUUAUu....................--....UAC.AAAAUCG.GAUUC.GAUGA.AACAGGAA ACUGU.GAAGUGCU.AUACAAA-...............................CUGUAGU.AGAU.UGAU...............ACUUGgu...................AUc...AUC.AAGGCAG.AGCAC.GUUGA.AGCAGUAA ACUGU.GGAGUGCU.GUGCAAA-...............................CUGGAGU.AGCU.UA--...............-----.....................--....GGC.AAAACAG.AGUAC.GUUGA.AGCAGUAA ACUGU.GGAGUGCU.AAGCAAA-...............................CUGUAGU.AGCU.U---...............C----.....................--....GGC.AAGGCAG.AGUAC.GUUGA.AACAGUAA ACUGU.GGAGUGCU.AUAUAAA-...............................CUGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGACAG.GGUAC.GUUGA.AACAGUAA ACUGU.GGAGUGCU.AUACAAA-...............................CUGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGACAG.GGUAC.GUUGA.AACAGUAA ACUGU.GGAGUGCU.AUACAAA-...............................CUGUAGU.AGCU.UA--...............-----.....................--....GGC.AAAGCAG.AGUAC.GUUGA.AACAGUAA ACUGU.GGAGUGCU.AUACAAA-...............................CUGUAGU.AGCUaUA--...............-----.....................--....GGC.AAGGCGG.AGCAC.GUUGA.AACAGUAA ACUGU.GGAGUGCU.AUACAAA-...............................CUGUAGU.AGCU.--UC...............GGCAAggca.................GA....GGC.AAGGCAG.AGUAC.AUUGA.AGCAGUAA ACUGU.GGAGUGCU.AUACAAA-...............................CUGUAGU.AGCC.UC--...............-----.....................--....GGC.AAGGCAG.AGUAC.AUCGA.AGCAGUAA ACUAU.GGAGUGUU.AUAUAAAG...............................CUGUAGU.AGCUaUA--...............-----.....................--....GGC.AAGACAG.AACAC.GUUGA.AAUAGUAA ACUGU.GGAUUGCU.AUACAAA-...............................CUGUAGU.AGGU.-AGAu..............AUUUUgu..................aUC....AUC.AAGGCAG.AGUAC.GGUGA.AACAGUAA CCUUU.GGAGUGUC.AUACCAAA...............................CUGUAGU.AGCC.CA--...............-----.....................--....GGC.AAGGCAG.GACAC.GUUGA.AUAAGGAA CCUGU.GGAGUGUU.AUAUCAAA...............................CUGUAGU.AGUC.UGUU...............GCUAA.....................AGuaacGAC.AAGGCAG.GACACgAUUGA.AGCAGGAA CCUGU.GGAGUGUU.AUAUCAAA...............................CUGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCAG.GACAC.GCUGA.AACAGGAA CCUGU.GGAGUGUU.AUAUCAAA...............................CUGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCAG.GACAC.GAUUA.AAGAGAAA CCUGU.GGAGUGUU.AUAUCAAA...............................CCGUAGU.AGCU.UC--...............-----.....................--....GGC.AAGGCGG.GACAC.UUUGA.AGCAGGAA