Rfam: Seed sequence alignment for RF03064

URS0000D6C8DF_12908/1-66 unclassified sequences 0.0 URS0000D6B11D_12908/1-66 unclassified sequences 0.0 URS0000D6C7B7_797516/1-66 Lactobacillus kisonensis F0435 0.0 URS0000D6CE03_12908/1-67 unclassified sequences 0.0 URS0000D6BFAF_12908/1-67 unclassified sequences 0.0 URS0000D6815E_12908/1-67 unclassified sequences 0.0 URS0000D6986A_12908/1-69 unclassified sequences 0.0 URS0000D68116_12908/1-64 unclassified sequences 0.0 URS0000D68C08_12908/1-75 unclassified sequences 0.0 URS0000D69444_12908/1-74 unclassified sequences 0.0 URS0000D6AB4D_12908/1-66 unclassified sequences 0.0 URS0000D65AD4_12908/1-75 unclassified sequences 0.0 URS0000D688A2_12908/1-62 unclassified sequences 0.0 URS0000D6B27E_12908/1-70 unclassified sequences 0.0 URS0000D695E4_1150157/1-67 Bacillus bingmayongensis 0.0 URS0000D68B79_12908/1-65 unclassified sequences 0.0 URS0000D6B63D_12908/1-73 unclassified sequences 0.0 URS0000D6A16E_12908/1-65 unclassified sequences 0.0 URS0000D6BCF8_12908/1-63 unclassified sequences 0.0 URS0000D6B728_12908/1-63 unclassified sequences 0.0 URS0000D6CF23_12908/1-63 unclassified sequences 0.0 URS0000D666AA_12908/1-75 unclassified sequences 0.0 URS0000D68AC5_12908/1-75 unclassified sequences 0.0 URS0000D6671E_12908/1-75 unclassified sequences 0.0 URS0000D66AFE_1033739/1-67 Kurthia sp. JC30 0.0 URS0000D6A62B_1033739/1-67 Kurthia sp. JC30 0.0 URS0000D672A9_1033739/1-67 Kurthia sp. JC30 0.0 URS0000D6B1A5_1033739/1-67 Kurthia sp. JC30 0.0 URS0000D68D88_1033740/1-67 Kurthia sp. JC8E 0.0 URS0000D67791_1033739/1-64 Kurthia sp. JC30 0.0

CUUGU.GGACUGUU.ACAUCAA-...............................CUGUAGU.AGCG.--AG...............-CUUUu....................--....GGC.GAGGCAG.GACAG.GAUAA.AGCAAGAA CUUGU.GGACUAUC.AUAUCAA-...............................CCAUAGU.AGAG.UA--...............CUUGU.....................--....GUC.GAGGUGG.GAUAG.GAUGA.AGCAAGAA CUUGU.GGACUAUC.AUAUCAA-...............................CCAUAGU.AGAG.UGC-...............-U---.....................UGu...GUC.GAGGUGG.GAUAG.GAUGA.AGCAAGAA CCUUC.GGAGUGCC.AAACAAG-...............................UCGGAGU.AGGU.-A--...............-GCAAuaa..................--....GCC.CAAACGA.GGCAC.GUUGA.ACAAGGAA CCUAC.GGACUGUC.ACACAAA-...............................UGAUAGU.AACU.CGAA...............UU---.....................U-.u..AGU.GAACUCA.GACAG.GUUGA.ACUAGGAA CCUAC.GGACUGUC.GUACUAA-...............................CGAAAGU.AGCU.CGA-...............AU-UU.....................--u...AGU.GAACUCA.GGCAG.GUUGA.ACUAGGAA CCUUU.GGAGCGAU.AUAGAAAAa..............................CUAGAUU.AGCU.UAG-...............UUUUU.....................--....AGU.GAAAUAG.GUCGC.CAUGA.AUUAGGAA CCUUU.GGAGUGUA.AAU---A-..............................gCUUUAGU.AGUCuUA--...............GG---.....................UA....GGC.GAGGAAG.UACAC.GUUGA.AUAAGGAA UCUAC.GGAGUGCG.AUACCAAA...............................CGUUAGU.AGCGaGACG...............GGAAUc....................CGuu..AGC.GAGAACG.CGCAC.AUUGA.ACUAGAAA CCUUU.GGAGUGCG.AUAUCAAA...............................CAUUAGU.AGCUcGAA-...............CGAAA.....................-GuaagGGC.GAGGACG.CGCAC.GUUGA.AAAAGGAA CCUUU.GGAGUGCG.AUAUCAAA...............................CGUUAGU.AGUU.--C-...............GU---.....................-Gag..GGC.GAGAACG.CGCAC.GUUGA.AAAAGGAA UCUAC.GGAGUGCG.AUACCAAA...............................CGUUAGU.AGC-.GAGAcgg............GAAU-..................ccgUCa...-GC.GAGAACG.CGCAC.GUUGA.AAUAGAAA CCUUU.AGACUACU.AAGAAAA-...............................CUCAAGU.AGCUuUU--...............-----.....................--....AGC.AAAAGAG.AGUAG.GUUGA.UGAAGGAA CCUCU.GGAGUAUC.ACACCAA-...............................CGAAAGU.AGUU.UCUU...............G-AAAa....................AG....UAC.AAAAUCG.GAUAC.UGAGA.AAGAGGAA CUUGU.GGAGUGCU.AUAUCAAA...............................UUGUGGU.AGCG.-A--...............AUAAGu....................--....GGC.GAAGCGA.GGCAC.AUAGA.AGCAAGAA ACUGU.GGAGAGUU.AUAUACAAa..............................CGAUAGU.AGCA.----...............GGAA-.....................--....UGC.AAGGUCG.GACUC.GUUGA.AACAGUAA ACUGU.GGAGUGUA.CUUUGGAUc..............................UGCCGGU.AGCA.GAUG...............GAAA-.....................CAuc..UGC.GAAAGCA.UACAC.GUUGA.AGCAGUAA CCCUU.GGAGUAUC.ACACCAA-...............................CUCAAGU.ACUU.UG--...............--UA-.....................--aa..AAG.GAAAGAG.GAUAC.GUUGA.AUGGGGAA CCCUG.GGAGUAUC.AUACCAA-...............................CUUGAGU.AACCaU---...............UA---.....................--....GGU.GAAAGAG.GAUAC.GUUGA.AUAGGAAA CCCUG.GGAGUAUC.ACACAAA-...............................CUCAAGU.AGCCaU---...............UA---.....................--....GGU.GAAAGAG.GAUAU.GUUGA.AUAGGGAA CCUAU.GGAGUAUU.AUACCAAA...............................CUUGAGU.AG--.----...............GUUUUua...................--....--C.GAAAAAG.GAUAC.AGUGA.AGUAGGAA UCUUU.GAAGUGUA.CUUGAACA...............................UGUGAGU.AGUU.GUUG...............GAUUUauc..................CAa...AAC.CAAAGCA.UACAC.GAUGA.AGAAUAAA UCUUU.GAAGUGUA.CUAGAACA...............................UAUGAGU.AGUU.GUUG...............GAUUUauc..................CAa...AAC.CAAAGCA.UACAC.GAUGA.AGAAUAAA UCUUU.GAAGUGUA.CUAGAACA...............................UGUGAGU.AGUU.GUUG...............GAUUUauc..................CAa...AAC.CAAAGCA.UACAC.GAUGA.AGAAUAAA CCUGU.GGAGAGUG.AUACGAAA...............................CGUUAGU.AGGG.-AGU...............-----.....................ACgu..GCC.GAGGACG.CAUUC.UAAGA.AGCAGGAA CCUGU.GGAGAGUG.AUACGAAA...............................CGUUAGU.AGGG.-AGU...............-----.....................ACgu..GCC.GAGGACG.CAUUC.UGAGA.GGCAGGAA CCUGU.GGAGAAUG.ACACCAAA...............................CGUUAGU.AGGG.-AGU...............-----.....................ACgu..GCC.GAGAACG.CAUUC.UAAGA.AGCAGGAA CCUGU.GGAGAAUG.ACACGAAA...............................CGUUAGU.AGGG.-AGU...............-----.....................ACgu..GCC.GAGGACG.CAUUC.UGAGA.AGCAGGAA CCUGU.GGAGAAUG.AUACAAAA...............................CGUUGGU.AGGG.-AGU...............-----.....................ACgu..GCU.GAAGACG.CAUUC.UAAGA.AGCAGGAA CCUGU.GGAGAGUG.AUACGAAA...............................CGUUAGU.AGGU.--AC...............-----.....................GU....GCC.GGGGACG.CAUUC.UGAGA.AGCAGGAA