Rfam: Seed sequence alignment for RF03064

URS0000D67513_12908/1-61 unclassified sequences 0.0 URS0000D6AF4A_12908/1-61 unclassified sequences 0.0 URS0000D658E9_12908/1-61 unclassified sequences 0.0 URS0000D65E28_12908/1-61 unclassified sequences 0.0 URS0000D66AA8_12908/1-62 unclassified sequences 0.0 URS0000D697FB_12908/1-61 unclassified sequences 0.0 URS0000D6ACE4_12908/1-61 unclassified sequences 0.0 URS0000D66706_12908/1-62 unclassified sequences 0.0 URS0000D6952F_12908/1-60 unclassified sequences 0.0 URS0000D66FB7_12908/1-61 unclassified sequences 0.0 URS0000D6B3ED_12908/1-61 unclassified sequences 0.0 URS0000D68CC3_12908/1-61 unclassified sequences 0.0 URS0000D6A92D_12908/1-61 unclassified sequences 0.0 URS0000D687A4_12908/1-61 unclassified sequences 0.0 URS0000D6C357_12908/1-61 unclassified sequences 0.0 URS0000D67ED8_12908/1-61 unclassified sequences 0.0 URS0000D6B0B9_12908/1-61 unclassified sequences 0.0 URS0000D6606F_12908/1-61 unclassified sequences 0.0 URS0000D65B8B_12908/1-61 unclassified sequences 0.0 URS0000D6730F_12908/1-61 unclassified sequences 0.0 URS0000D6B856_12908/1-61 unclassified sequences 0.0 URS0000D69649_12908/1-61 unclassified sequences 0.0 URS0000D68C7C_12908/1-61 unclassified sequences 0.0 URS0000D6A5EF_12908/1-61 unclassified sequences 0.0 URS0000D682C7_212717/1-61 Clostridium tetani E88 0.0 URS0000D66D02_1231072/1-61 Clostridium tetani 12124569 0.0 URS0000D69445_12908/1-61 unclassified sequences 0.0 URS0000D65CC6_12908/1-78 unclassified sequences 0.0 URS0000D674FC_12908/1-79 unclassified sequences 0.0 URS0000D67959_12908/1-88 unclassified sequences 0.0

CCUUA.GGAGUGUU.AUAUAAA-...............................CCAGAGU.AGCU.U---...............A----.....................--....UGC.AAAAUGG.GACAC.GAUGA.AUGAGGAA CCUUA.GGAGUGUU.AUAUAAA-...............................CCAGAGU.AGCU.U---...............A----.....................--....UGC.AAAAUGG.GACAC.GAUGA.AUAAGGAA CCUUU.GGAGUGUU.AUACAAA-...............................CCAGAGU.AGCG.UA--...............-----.....................--....UGC.AAAAUGG.GACAC.UAUGA.AUAAGGAA CCUUU.GGAGUGUU.AUAUAAA-...............................CCAGAGU.AGCG.UA--...............-----.....................--....UGC.AAAAUGG.GACAC.UAUGA.AUAAGGAA GCUGU.GGAGUGUC.AAACAAAA....................gua........CG---GU.AGCU.UC--...............-----.....................--....GGC.AAAGACG.GACAC.GUUGA.AGCAGUAA ACUGU.GGAGUGUC.AAACAAA-...............................CGUCGGU.AGCU.UU--...............-----.....................--....GGC.GAAGACG.GACAC.GUUGA.AGCAGUAA GCUGU.GGAGUGUC.AAACAAA-...............................AGUCGGU.AGCU.UC--...............-----.....................--....GGC.AAAGACG.GACAC.GUUGA.AGCAGUAA ACUGU.GGAGUGUC.AAACAAAA...............................AGUCGGU.AGCU.-A--...............C----.....................--....GGC.AAAGACG.GACAC.GCAGA.AGCAGUAA ACUGU.GGAGUAUC.AAA--AAA...............................UGUCGGU.AGCU.AA--...............-----.....................--....GGC.AAAGACA.GAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUGUU.GUAUAAA-...............................CGUUGGU.AGCU.-A--...............C----.....................--....GGC.AAAGACG.GACAC.GACGA.AGCAGUAA CCUGU.GGAGUGUC.AUACAAA-...............................CGAUGGU.AGCU.----...............UU---.....................--....GGC.AAAAUCG.GAUAC.GAUGA.AACAGGAA CCUGU.GGAGUGUC.AUACAAA-...............................CGAUGGU.AGCU.UU--...............-----.....................--....GGC.GAAGUCG.GAUAC.GAUGA.AACAGGAA GCUAU.GGAGUGUC.AUAUAAA-...............................CUGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCAG.GACAC.UGCGA.AGUAGUGA GCUGU.GGAGCGUC.AAACAAA-...............................CCCAAGU.AGUC.----...............AC---.....................--....GAC.GAACGGG.GACGC.UGUGA.AGCAGUAA ACUGU.GGAGCGUC.AAACAAA-...............................CCCAAGU.AGUU.----...............AC---.....................--....GAC.GAACGGG.GACGC.UGUGA.AGCAGUAA ACUGU.GGAGCGUC.ANACAAU-...............................CCCAAGU.AGUU.----...............AC---.....................--....GAC.GAACGGG.GACGC.UGUGA.AGCAGUAA GCUGU.GGAGCGUC.AAACAAA-...............................CCCAAGU.AGUC.-A--...............C----.....................--....GAC.GAACGGA.GAUGC.UGUGA.AGCAGUAA ACUGU.GGAGCGUC.AUACAAA-...............................CCAAAGU.AGCC.AA--...............-----.....................--....GGC.AAAAUGG.GACGC.UACGA.AGCAGUAA GCUGU.GGAGCGUC.AUACAAA-...............................CCAAAGU.AGUU.----...............CC---.....................--....GAC.GAAAUGG.GACGC.UACGA.AGCAGUAA GCUGU.GGAGAGUU.AUACAAA-...............................CGAAAGU.AGCU.A---...............A----.....................--....GGC.AAAAUCG.GACUU.UAUGA.AGCAGCGA ACUGU.GGAGAGUU.AUACAAA-...............................CGAAAGU.AGCU.A---...............A----.....................--....GGC.AAAAUCG.GACUC.UAUGA.AGCAGUGA CCUUU.GGAGAGCU.AAAAUCA-...............................CUAAAGU.AGCU.UA--...............-----.....................--....AGC.GAAAUAG.AGUUC.AAUGA.AGAAGGAA CCUUU.GGAGAAUU.ACACCAA-...............................CCCAAGU.AGCU.----...............AC---.....................--....GGC.AAAAGGG.AAUUC.GUUGA.AGAAGGAA CUCUU.GGAGAAUU.ACACCAA-...............................CCCGAGU.AGCU.UA--...............-----.....................--....GGC.AAAAGGG.AAUUC.GUUGA.AGAGAGAA CCUAU.GGAGUGUU.ACACAAA-...............................UGAAAGU.AGAC.UU--...............-----.....................--....GGU.AAAAUCG.GAUAC.UAUGA.AGUAGGAA CCUAU.AGAGUGUU.ACACAAA-...............................CGAAAGU.AGCC.UU--...............-----.....................--....GGU.AAAAUCG.GAUAC.UAUGA.GGUAGGAA CCCUC.GGAGUACC.AUACCAA-...............................CGAAAGU.AGCU.----...............GC---.....................--....GGC.AAAAUCG.GGUAC.GUUGA.AAAGGGAA CUUGU.GGACUGUU.CUACCAAA...............................UGGGAGU.AGUC.--UU.uau...........AUCUCg................auacAAa...AAC.AAAACCA.GACAG.GAUGA.AGCAAGAA CUUGU.GGACUGUU.AUAUCAAA...............................UGGGAGU.AGAU.--UUaua............UUUGAgga...............uauAAa...AAC.AAAACCA.GACAG.GAAGA.AGCAAGAA CUUGU.GGACUGUU.AUAACAAA...............................UGGAAGU.AGAU.-UUUauauuau........UUUGAgau...........augauauAAa...AAC.AAAACCA.GACAG.GGUGA.AGCAAGAA